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Aliases & Descriptions for TNKS
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 2.4.2.30 3 | | OTTHUMP00000115550 2 | | PARP-5a 1, 2 | | PARP5A 1, 2, 3 | | PARPL 2, 3 | | TANK1 3 | | TIN1 1, 2, 3 | | TINF1 1, 2, 3 | | TNKS-1 3 | | TNKS1 1, 2, 3 |
| | | Descriptions |
|---|
| TRF1-interacting ankyrin-related ADP-ribose polymerase 3 | | Tankyrase I 3 | tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 |
|
| | Search outside databases for aliases for TNKS genePrevious GC identifer: GC08P009330 |
Summaries for TNKS(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: TNKS1_HUMAN, O95271Function: May regulate vesicle trafficking and modulate the subcellular distribution of SLC2A4/GLUT4-vesicles. Has PARP activity and can modify TERF1, and thereby contribute to the regulation of telomere lengthGene Wiki entry for TNKS |
Genomic Location for TNKS
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the TNKS gene 
Entrez Gene cytogenetic band: 8p23.1 Ensembl cytogenetic band: 8p23.1 HGNC cytogenetic band: 8p23.1TNKS Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 8 GeneLoc Exon Structure GeneLoc location for GC08P009450:
(about GC identifiers)
Start:
|
9,450,855 bp from pter |
End:
|
9,677,266 bp from pter |
Size:
|
226,412 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000008.9 NT_077531.3
| Proteins for TNKS
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: TNKS1_HUMAN, O95271 (See
protein sequence)Recommended Name: Tankyrase-1 Size: 1327 amino acids; 142039 Da
Subunit: Oligomerizes and associates with TNKS2. Interacts with the cytoplasmic domain of LNPEP/Otase in SLC2A4/GLUT4-vesicles. Binds to the N-terminus of telomeric TERF1 via the ANK repeats. Found in a complex with POT1; TERF1 and TINF2
Subcellular location: Cytoplasm. Golgi apparatus membrane; Peripheral membrane protein. Nucleus, nuclear pore complex. Telomere (Potential). Note=Associated with the Golgi and with juxtanuclear SLC2A4/GLUT4-vesicles. A minor proportion is also found at nuclear pore complexes and around the pericentriolar matrix of mitotic centromeres. During interphase, a small fraction of TNKS is found in the nucleus, associated with TERF1
PDB structures from and Proteopedia :2RF5 (3D)
 
Secondary accessions: O95272Alternative splicing: 2 isoforms: O95271-1 O95271-2 Post-translational modifications:
Phosphorylated on serine residues by MAPK kinases upon insulin stimulation1
ADP-ribosylated (-auto)1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_003738.2
ENSEMBL proteins: ENSP00000311579
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5/11 Gene Ontology (GO) cellular component terms (links to tree view) (see all 11
): About this table
Antibodies for TNKS: Assays for TNKS: | Protein
Domains/ Families for TNKS(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry O95271
ProtoNet protein and cluster: O95271 3 Blocks protein families: IPB001660 Sterile alpha motif SAM IPB002110 Ankyrin repeat signature IPB011510 Sterile alpha motif homology 2
UniProtKB/Swiss-Prot: TNKS1_HUMAN, O95271Similarity: Contains 15 ANK repeatsSimilarity: Contains 1 PARP catalytic domainSimilarity: Contains 1 SAM (sterile alpha motif) domain | Gene Function for TNKS
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003747
Applied Biosystems Silencer® siRNAs for TNKS
Sigma-Aldrich siRNA and siRNA Panels for TNKS  Sigma-Aldrich shRNA for TNKS  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003747                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003747                                  untagged cDNA clones in CMV expression vector (see all 2): NM_003747 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003747
UniProtKB/Swiss-Prot: TNKS1_HUMAN, O95271Function: May regulate vesicle trafficking and modulate the subcellular distribution of SLC2A4/GLUT4-vesicles. Has PARP activity and can modify TERF1, and thereby contribute to the regulation of telomere lengthCatalytic activity: NAD(+) + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptorEnzyme Number (IUBMB): EC 2.4.2.30 Genatlas biochemistry entry for TNKS:tankyrase,a poly (ADP ribose) polymerase located at telomeres,centromeres and nuclear pore complexes,binding the telomere-specific DNA binding protein TERF1 potential modulator of telomere length6 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Tnks):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for TNKS
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for TNKS 
5/19 Interacting proteins for TNKS (O952711 ENSP000003115793) via UniProtKB, MINT, and/or STRING (see all 19
)About this table
5/12 Gene Ontology (GO) biological process terms (links to tree view) (see all 12
): About this table
|
Drugs & Compounds for TNKS(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for TNKS 2 Novoseek chemical compound relationships for TNKS gene
About this table
|
Transcripts for TNKS(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003747
Sigma-Aldrich siRNA and siRNA Panels for TNKS  Sigma-Aldrich shRNA for TNKS  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_003747 REFSEQ mRNAs for TNKS gene: NM_003747.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003747               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003747                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003747                                  untagged cDNA clones in CMV expression vector (see all 2): NM_003747  Additional cDNA sequence: AB209339.1 AF070613.1 AF082556.1 AF082557.1 AF082558.1 AF082559.1 AK301798.1 AK302031.1 AK302534.1 BC098394.1 CR590086.1 13 DOTS entries: DT.216619 DT.65288499 DT.97802352 DT.101965487 DT.306099 DT.91768757 DT.101501 DT.91768752 DT.91768766 DT.121494201 DT.95127756 DT.40122815 DT.91768751 24/239 AceView cDNA sequences (see all 239
):BF725059 AI424165 Z43947 AA765825 AI362226 F04348 BX955476 CA443089 Z40890 AI040551 CD108652 AI424440 AF082556 AW665966 BF477720 BG655725 AW631332 BM698336 AW068931 Z45482 AA749311 BG287954 F08801 T32850
highest scoring ESTs for TNKS:AF082557 AA205162 AA205204 AA206870 AA206871 AA243359 AA249768 AA252630 AA293113 AA348605 Unigene Cluster for TNKS: Tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase Hs.370267 [show with all ESTs]Unigene Representative Sequence: NM_003747
GeneLoc Exon Structure
2 Alternative Splicing Database (ASD) splice patterns (SP) for TNKS
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | ^ | 15 | ^ | 16 | ^ | 17 | ^ | 18 | ^ | 19 | ^ | 20 | ^ | 21 | ^ | 22 | ^ | 23 | ^ | 24 | ^ | 25a | · | 25b | ^ | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 26 | ^ | 27a | · | 27b | |
| SP1: | - |   | |   | |   | |
| SP2: | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for TNKS
1 Ensembl transcript including schematic representation: ENST00000310430
|
Expression for TNKS
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| TNKS expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for TNKS
1 / 2 / 3 11 probe-sets matching TNKS gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TTAAAGTCCT
SOURCE GeneReport for Unigene cluster: Hs.370267
Expression variation in blood from EXPOLDB for TNKS UniProtKB/Swiss-Prot: TNKS1_HUMAN, O95271Tissue specificity: Ubiquitous; highest levels in testis |
Orthologs for TNKS
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for TNKS gene from 5/10 species (see all 10
)
About this table Species with no ortholog for TNKS
ENSEMBL Gene Tree for TNKS | Paralogs for TNKS(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for TNKS gene
- TNKS22 ANKRD292
|
SNPs/Variants for TNKS(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for TNKS (up to first 250kb)
|
Disorders & Mutations for TNKS
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 603303
3 Novoseek disease relationships for TNKS gene
About this table
Human Genome Epidemiology Navigator: TNKS (1 document)
|
Medical News for TNKS(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for TNKS (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 12/63 PubMed articles for TNKS gene (see all 63
):- Tankyrase, a poly(ADP-ribose) polymerase at human telomeres. (PubMed id 9822378)2, 3, 4 Smith S.... de Lange T. (1998)
- Role for the related poly(ADP-Ribose) polymerases tankyrase 1 and 2 at human telomeres. (PubMed id 11739745)1, 3, 4 Cook B.D.... Smith S. (2002)
- POT1 as a terminal transducer of TRF1 telomere length control. (PubMed id 12768206)3, 4 Loayza D. and De Lange T. (2003)
- Tankyrase is a Golgi-associated mitogen-activated protein kinase substrate that interacts with IRAP in GLUT4 vesicles. (PubMed id 10988299)3, 4 Chi N.-W. and Lodish H.F. (2000)
- Cell cycle dependent localization of the telomeric PARP, tankyrase, to nuclear pore complexes and centrosomes. (PubMed id 10523501)3, 4 Smith S. and de Lange T. (1999)
- Chromosomal mapping of the tankyrase gene in human and mouse. (PubMed id 10198177)2, 3 Zhu L....Seldin M.F. (1999)
- NuMA is a major acceptor of poly(ADP-ribosyl)ation by tankyrase 1 in mitosis. (PubMed id 16076287)1, 3 Chang W....Smith S. (2005)
- Tankyrase-2 oligomerizes with tankyrase-1 and binds to both TRF1 (telomere-repeat-binding factor 1) and IRAP (insulin-responsive aminopeptidase). (PubMed id 11802774)1, 3 Sbodio J.I.... Chi N.-W. (2002)
- The telomeric poly(ADP-ribose) polymerase, tankyrase 1, contains multiple binding sites for telomeric repeat binding factor 1 (TRF1) and a novel acceptor, 182-kDa tankyrase-binding protein (TAB182). (PubMed id 11854288)1, 3 Seimiya H. and Smith S. (2002)
- Functional subdomain in the ankyrin domain of tankyrase 1 required for poly(ADP-ribosyl)ation of TRF1 and telomere elongation. (PubMed id 14966275)1, 3 Seimiya H....Tsuruo T. (2004)
- The formin-binding protein 17, FBP17, binds via a TNKS binding motif to tankyrase, a protein involved in telomere maintenance. (PubMed id 14596906)1, 3 Fuchs U.... Borkhardt A. (2003)
- Upregulation of telomerase activity by X-irradiation in mouse leukaemia cells is independent of Tert, Terc, Tnks and Myc transcription. (PubMed id 10753188)1 Finnon P....Bouffler S.D. (2000)
|
Search for TNKS
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing TNKS
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing TNKS
(According to HUGE)
About This Section
| -- |
Specialized Databases showing TNKS(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for TNKS(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for TNKS:

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Incremental update: 13 Oct 2009
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