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Aliases for TNK2-AS1 Gene

Subcategory (RNA class) for TNK2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TNK2-AS1 Gene

  • TNK2 Antisense RNA 1 2 3 5

External Ids for TNK2-AS1 Gene

Previous GeneCards Identifiers for TNK2-AS1 Gene

  • GC03P195636

Summaries for TNK2-AS1 Gene

GeneCards Summary for TNK2-AS1 Gene

TNK2-AS1 (TNK2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TNK2-AS1 Gene

Genomics for TNK2-AS1 Gene

Regulatory Elements for TNK2-AS1 Gene

Enhancers for TNK2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G195905 1.7 FANTOM5 ENCODE dbSUPER 6.5 +0.8 833 7.0 HDGF PKNOX1 FOXA2 ZFP64 WRNIP1 ARID4B SIN3A YBX1 FEZF1 ZNF2 ENSG00000271662 SDHAP2 LINC00969 MUC20 TNK2-AS1 ENSG00000231443 PPP1R2 TNK2 ACAP2 PCYT1A
GH03G195899 1.4 FANTOM5 ENCODE dbSUPER 6.2 -7.0 -7021 3.5 HDGF CTCF ZSCAN4 MAX CEBPG ZFHX2 EGR1 POLR2A EED CREM ENSG00000271662 LINC00969 ACAP2 LOC100131360 MUC20 TNK2-AS1 SDHAP2 PPP1R2 TNK2 PCYT1A
GH03G195891 1.3 ENCODE dbSUPER 6.2 -12.9 -12928 7.4 PKNOX1 FOXA2 ARNT AGO1 ZFP64 ARID4B SIN3A ZNF2 ZBTB7B ZNF207 ENSG00000271662 LINC00969 TNK2-AS1 MUC20 SDHAP2 MUC4 MIR6829
GH03G195903 1 ENCODE dbSUPER 5.2 -3.8 -3822 2.1 HDGF ZFP64 WRNIP1 CEBPG ZBTB40 TEAD3 GATA3 SCRT2 IKZF2 RFX1 ENSG00000271662 MUC20 SDHAP2 TNK2-AS1 MUC4 MIR6829
GH03G195889 1.1 Ensembl ENCODE dbSUPER 0.4 -18.0 -17958 1.2 CTCF NR2F1 PPARG ZIC2 ZBTB7A NR2C1 NR2F6 KDM1A HNF4A SDHAP2 MIR6829 TNK2-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TNK2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TNK2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000164329 1124 1601 HDGF ARID4B ZNF2 ZNF48 GLIS2 GATA2 ZNF207 ZNF263 SP3 SP5

Genomic Location for TNK2-AS1 Gene

Chromosome:
3
Start:
195,908,076 bp from pter
End:
195,911,257 bp from pter
Size:
3,182 bases
Orientation:
Plus strand

Genomic View for TNK2-AS1 Gene

Genes around TNK2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TNK2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TNK2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TNK2-AS1 Gene

Proteins for TNK2-AS1 Gene

Post-translational modifications for TNK2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TNK2-AS1 Gene

Domains & Families for TNK2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TNK2-AS1 Gene

Function for TNK2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TNK2-AS1 Gene

Localization for TNK2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TNK2-AS1 Gene

Pathways & Interactions for TNK2-AS1 Gene

SuperPathways for TNK2-AS1 Gene

No Data Available

Interacting Proteins for TNK2-AS1 Gene

Gene Ontology (GO) - Biological Process for TNK2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TNK2-AS1 Gene

Drugs & Compounds for TNK2-AS1 Gene

No Compound Related Data Available

Transcripts for TNK2-AS1 Gene

mRNA/cDNA for TNK2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TNK2-AS1 Gene

No ASD Table

Relevant External Links for TNK2-AS1 Gene

GeneLoc Exon Structure for
TNK2-AS1
ECgene alternative splicing isoforms for
TNK2-AS1

Expression for TNK2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TNK2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TNK2-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x6.6).
genes like me logo Genes that share expression patterns with TNK2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TNK2-AS1 Gene

Orthologs for TNK2-AS1 Gene

Evolution for TNK2-AS1 Gene

ENSEMBL:
Gene Tree for TNK2-AS1 (if available)
TreeFam:
Gene Tree for TNK2-AS1 (if available)

No data available for Orthologs for TNK2-AS1 Gene

Paralogs for TNK2-AS1 Gene

No data available for Paralogs for TNK2-AS1 Gene

Variants for TNK2-AS1 Gene

Sequence variations from dbSNP and Humsavar for TNK2-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs180993748 -- 195,913,199(+) CCCCA(A/G/T)AACCC nc-transcript-variant
rs182598393 -- 195,907,039(+) AGCGA(A/C/T)ATAAC intron-variant, upstream-variant-2KB
rs536314164 -- 195,910,501(+) ACTGT(A/C/T)CCTCA nc-transcript-variant, upstream-variant-2KB
rs543895592 -- 195,907,938(+) CTCAG(A/C/G)GTAAA intron-variant, upstream-variant-2KB
rs559364826 -- 195,909,748(+) CCGAG(A/C/T)GCCCC upstream-variant-2KB

Relevant External Links for TNK2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TNK2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TNK2-AS1 Gene

Disorders for TNK2-AS1 Gene

Relevant External Links for TNK2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TNK2-AS1

No disorders were found for TNK2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TNK2-AS1 Gene

Publications for TNK2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for TNK2-AS1 Gene

Sources for TNK2-AS1 Gene

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