TNK2 Gene
protein-coding GIFtS: 61
GCID: GC03M195590
|
|
tyrosine kinase, non-receptor, 2
| |
Aliases
for TNK2 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Tyrosine Kinase, Non-Receptor, 21 2 | | EC 2.7.10.23 8 | | ACK11 2 3 5 | | Activated CDC42 Kinase 12 | | ACK1 2 5 | | Activated Cdc42-Associated Kinase 12 | | P21cdc42Hs1 | | Activated P21cdc42Hs Kinase2 | | Tyrosine Kinase Non-Receptor Protein 22 3 | | EC 2.7.11.13 | | ACK-12 3 | | EC 2.7.108 |
Export aliases for TNK2 gene to outside databasesPrevious GC identifers: GC03M197080 GC03M192870 |
Summaries
for TNK2 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for TNK2:
This gene encodes a tyrosine kinase that binds Cdc42Hs in its GTP-bound form and inhibits both the intrinsic andGTPase-activating protein (GAP)-stimulated GTPase activity of Cdc42Hs. This binding is mediated by a unique sequenceof 47 amino acids C-terminal to an SH3 domain. The protein may be involved in a regulatory mechanism that sustains theGTP-bound active form of Cdc42Hs and which is directly linked to a tyrosine phosphorylation signal transductionpathway. Several alternatively spliced transcript variants have been identified from this gene, but the full-lengthnature of only two transcript variants has been determined. (provided by RefSeq, Jul 2008)
UniProtKB/Swiss-Prot: ACK1_HUMAN, Q07912Function: Non-receptor tyrosine-protein and serine/threonine-protein kinase that is implicated in cell spreading andmigration, cell survival, cell growth and proliferation. Transduces extracellular signals to cytosolic and nucleareffectors. Phosphorylates AKT1, AR, MCF2, WASL and WWOX. Implicated in trafficking and clathrin-mediated endocytosisthrough binding to epidermal growth factor receptor (EGFR) and clathrin. Binds to both poly- and mono-ubiquitin andregulates ligand-induced degradation of EGFR, thereby contributing to the accumulation of EGFR at the limitingmembrane of early endosomes. Downstream effector of CDC42 which mediates CDC42-dependent cell migration viaphosphorylation of BCAR1. May be involved both in adult synaptic function and plasticity and in brain development.Activates AKT1 by phosphorylating it on 'Tyr-176'. Phosphorylates AR on 'Tyr-267' and 'Tyr-363' thereby promoting itsrecruitment to androgen-responsive enhancers (AREs). Phosphorylates WWOX on 'Tyr-287'. Phosphorylates MCF2, therebyenhancing its activity as a guanine nucleotide exchange factor (GEF) toward Rho family proteins. Contributes to thecontrol of AXL receptor levels. Confers metastatic properties on cancer cells and promotes tumor growth by negativelyregulating tumor suppressor such as WWOX and positively regulating pro-survival factors such as AKT1 and AR
Gene Wiki entry for TNK2
|
Genomic Views
for TNK2 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000003.11 NC_018914.1 NT_029928.13
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the TNK2 gene promoter:
AREB6 Pax-3 NF-1/L NF-1 FOXC1 p300 Nkx2-5
Other transcription factors
Search SABiosciences Chromatin IP Primers for TNK2
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TNK2 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 3q29 Ensembl cytogenetic band: 3q29 HGNC cytogenetic band: 3q29TNK2 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 3 GeneLoc Exon Structure GeneLoc location for GC03M195590: view genomic region
(about GC identifiers)
Start:
|
195,590,235 bp from pter |
End:
|
195,638,816 bp from pter |
Size:
|
48,582 bases |
Orientation:
|
minus strand |
|
Proteins
for TNK2 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: ACK1_HUMAN, Q07912 (See
protein sequence)Recommended Name: Activated CDC42 kinase 1 Size: 1038 amino acids; 114569 Da
Cofactor: Magnesium
Subunit: Interacts with NEDD4 (via WW3 domain). NEDD4L and EGF promote association with NEDD4 (By similarity).Homodimer. Interacts with AR, CDC42, WWASL and WWOX. Interacts with CSPG4 (activated). Interacts with MERTK(activated); stimulates autophosphorylation. May interact (phosphorylated) with HSP90AB1; maintains kinase activity.Interacts with NPHP1. Interacts with SNX9 (via SH3 domain). Interacts with SRC (via SH2 and SH3 domain). Interactswith EGFR, and this interaction is dependent on EGF stimulation and kinase activity of EGFR. Interacts (via kinasedomain) with AKT1. Part of a collagen stimulated complex involved in cell migration composed of CDC42, CRK, TNK2 andBCAR1/p130cas. Interacts with BCAR1/p130cas via SH3 domains. Forms complexes with GRB2 and numerous receptor tyrosinekinases (RTK) including LTK, AXL or PDGFRL, in which GRB2 promotes RTK recruitment by TNK2
Subcellular location: Cell membrane. Nucleus. Endosome. Cell junction, adherens junction (By similarity). Cytoplasmicvesicle membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasmic vesicle, clathrin-coated vesicle.Membrane, clathrin-coated pit. Note=The Tyr-284 phosphorylated form is found both in the membrane and nucleus.Co-localizes with EGFR on endosomes. Nuclear translocation is CDC42-dependent
Sequence caution: Sequence=AAH08884.1; Type=Miscellaneous discrepancy; Note=Unlikely isoform. Aberrant splice sites;
6/10 PDB 3D structures from  and Proteopedia  for TNK2 (see all 10):1CF4 (3D)
1U46 (3D)
1U4D (3D)
1U54 (3D)
3EQP (3D)
3EQR (3D)
Secondary accessions: Q6ZMQ0 Q8N6U7 Q96H59Alternative splicing: 3 isoforms: Q07912-1 Q07912-2 Q07912-3 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for TNK2: NX_Q07912
Post-translational modifications:
Autophosphorylation regulates kinase activity. Phosphorylation on Tyr-518 is required for interaction with SRC and isobserved during association with clathrin-coated pits1
Polyubiquitinated by NEDD4 and NEDD4L. Degradation can be induced by EGF and is lysosome-dependent (By similarity)1
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q07912
4/13 DME Specific Peptides for TNK2 (Q07912) (see all 13)
TNK2 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (2 alternative transcripts):
NP_001010938.1 NP_005772.3
ENSEMBL proteins: ENSP00000398614 ENSP00000371341 ENSP00000329425 ENSP00000392546 ENSP00000395588 ENSP00000390435 ENSP00000415126 ENSP00000392253 ENSP00000409462 ENSP00000393707 ENSP00000395154 ENSP00000390088 ENSP00000376201 ENSP00000323216
Human Recombinant Protein Products for TNK2:
Gene Ontology (GO): 5/13 cellular component terms (GO ID links to tree view) (see all 13): About this table
TNK2 for ontologies About GeneDecksing
TNK2 Antibody Products:
Assay Products for TNK2: |
Protein
Domains /
Families
for TNK2 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
TNK2 for domains About GeneDecksing
5/9 InterPro domains/families (see all 9):Graphical View of Domain Structure for InterPro Entry Q07912ProtoNet protein and cluster: Q07912 3 Blocks protein families: IPB000449 Ubiquitin-associated domain IPB001452 SH3 domain signature IPB008266 Tyrosine protein kinase
UniProtKB/Swiss-Prot: ACK1_HUMAN, Q07912Domain: The EBD (EGFR-binding domain) domain is necessary for interaction with EGFR (By similarity)Domain: The SAM-like domain is necessary for NEDD4-mediated ubiquitination. Promotes membrane localization anddimerization to allow for autophosphorylationDomain: The UBA domain binds both poly- and mono-ubiquitinSimilarity: Belongs to the protein kinase superfamily. Tyr protein kinase familySimilarity: Contains 1 CRIB domainSimilarity: Contains 1 protein kinase domainSimilarity: Contains 1 SH3 domainSimilarity: Contains 1 UBA domain |
Function
for TNK2 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Molecular Function:
UniProtKB/Swiss-Prot Summary: ACK1_HUMAN, Q07912Function: Non-receptor tyrosine-protein and serine/threonine-protein kinase that is implicated in cell spreading andmigration, cell survival, cell growth and proliferation. Transduces extracellular signals to cytosolic and nucleareffectors. Phosphorylates AKT1, AR, MCF2, WASL and WWOX. Implicated in trafficking and clathrin-mediated endocytosisthrough binding to epidermal growth factor receptor (EGFR) and clathrin. Binds to both poly- and mono-ubiquitin andregulates ligand-induced degradation of EGFR, thereby contributing to the accumulation of EGFR at the limitingmembrane of early endosomes. Downstream effector of CDC42 which mediates CDC42-dependent cell migration viaphosphorylation of BCAR1. May be involved both in adult synaptic function and plasticity and in brain development.Activates AKT1 by phosphorylating it on 'Tyr-176'. Phosphorylates AR on 'Tyr-267' and 'Tyr-363' thereby promoting itsrecruitment to androgen-responsive enhancers (AREs). Phosphorylates WWOX on 'Tyr-287'. Phosphorylates MCF2, therebyenhancing its activity as a guanine nucleotide exchange factor (GEF) toward Rho family proteins. Contributes to thecontrol of AXL receptor levels. Confers metastatic properties on cancer cells and promotes tumor growth by negativelyregulating tumor suppressor such as WWOX and positively regulating pro-survival factors such as AKT1 and ARCatalytic activity: ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphateCatalytic activity: ATP + a protein = ADP + a phosphoproteinEnzyme regulation: Inhibited by AIM-100 (4-amino-5,6-biaryl-furo[2,3-d]pyrimidine), which suppresses activatingphosphorylation at Tyr-284. Repressed by dasatinib Enzyme Numbers (IUBMB): EC 2.7.10.21 2 EC 2.7.102 EC 2.7.11.11
Gene Ontology (GO): 5/11 molecular function terms (GO ID links to tree view) (see all 11): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0004672 | protein kinase activity |
-- | -- | | GO:0004674 | protein serine/threonine kinase activity |
IEA | -- | | GO:0004712 | protein serine/threonine/tyrosine kinase activity |
IDA | 16257963 | | GO:0004713 | protein tyrosine kinase activity |
IDA | 18993068 | | GO:0004715 | non-membrane spanning protein tyrosine kinase activity |
IEA | -- |
TNK2 for ontologies About GeneDecksing
Phenotypes:
7 GenomeRNAi human phenotypes for TNK2:
Animal Models:
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TNK2 (see all 6)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TNK2 (see all 4)
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector (see all 2): TNK2 (NM_001010938) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TNK2 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TNK2 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TNK2 |
|
Pathways & Interactions
for TNK2 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways - 5/6 super-pathways (see all 6) About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | G-protein signaling Regulation of RAC1 activity | | | 2 | Tyrosine Kinases / Adaptors | | | 3 | Focal Adhesion | | | 4 | EGFR1 Signaling Pathway | | | 5 | G13 Signaling Pathway | |
Pathway sources
See GeneCards unified pathways
Show all pathways
2 EMD Millipore Pathways for TNK2
1 
Cell Signaling Technology (CST) Pathway for TNK2
2  GeneGo (Thomson Reuters) Pathways for TNK2
4  BioSystems Pathways for TNK2
TNK2 for pathways About GeneDecksing
Interactions:
SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for TNK2
STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)
5/56 Interacting proteins for TNK2 (Q079121, 2, 3 ENSP000003713414) via UniProtKB, MINT, STRING, and/or I2D (see all 56)| Interactant | Interaction Details |
|---|
| GeneCard | External ID(s) |
|---|
| BCAR1 | P569452, 3, ENSP000001623304 | MINT-7104409 MINT-7104436 MINT-7104364 MINT-7104381 MINT-7104396 I2D:
score=1 STRING: ENSP00000162330 | | SNX9 | Q9Y5X12, 3, ENSP000003760244 | MINT-62874 MINT-62879 MINT-62873 MINT-62880 I2D:
score=3 STRING: ENSP00000376024 | | CLTC | Q006102, 3, ENSP000002691224 | MINT-7983409 MINT-62881 I2D:
score=4 STRING: ENSP00000269122 | | ITFG2 | Q969R82, 3, ENSP000002287994 | MINT-64707 I2D:
score=2 STRING: ENSP00000228799 | | CRK | P461082, 3, ENSP000003005744 | MINT-7104372 I2D:
score=1 STRING: ENSP00000300574 |
About this table
Gene Ontology (GO): 5/6 biological process terms (GO ID links to tree view) (see all 6): About this table
TNK2 for ontologies About GeneDecksing
|
Drugs & Compounds
for TNK2 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
TNK2 for compounds About GeneDecksing
 Browse Tocris compounds for TNK2
3 HMDB Compounds for TNK2 About this table
2 DrugBank Compounds for TNK2 About this table
2 Novoseek chemical compound relationships for TNK2 gene About this table
Search CenterWatch for drugs/clinical trials and news about TNK2 / ACK1
|
Transcripts
for TNK2 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for TNK2 gene (2 alternative transcripts): NM_001010938.1 NM_005781.4 Unigene Cluster for TNK2: Tyrosine kinase, non-receptor, 2 Hs.518513 [show with all ESTs]Unigene Representative Sequence: AB20933818/24 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 24): ENST00000416152 ENST00000381916(uc003fvt.1 uc010hzw.1) ENST00000333602(uc003fvu.1)
ENST00000420716(uc003fvq.1) ENST00000428187(uc003fvs.1) ENST00000495247
ENST00000464041 ENST00000439230 ENST00000481865(uc003fvv.1) ENST00000424563
ENST00000478623 ENST00000411741 ENST00000489628 ENST00000478715 ENST00000468680
ENST00000486523 ENST00000438207 ENST00000430929
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TNK2 (see all 6)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TNK2 (see all 4)
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector (see all 2): TNK2 (NM_001010938) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TNK2 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TNK2 |
Additional cDNA sequence: AB209338.1 AK126712.1 AK127455.1 AK131539.1 AK225786.1 AK309332.1 BC008884.2 BC020389.1 BC028164.1 L13738.2 24 DOTS entries: DT.91875210 DT.97780847 DT.101983760 DT.101983759 DT.99967159 DT.40208268 DT.120927703 DT.91695164 DT.100751739 DT.100751737 DT.120927389 DT.95241216 DT.95355848 DT.97818466 DT.100009087 DT.120927805 DT.120927670 DT.120927822 DT.75189040 DT.95217433 DT.95241213 DT.95241214 DT.95241217 DT.99935113 24/181 AceView cDNA sequences (see all 181): AI950554 BC020389 BF058375 BG742978 AI859326 H02127 CD673649 AW072953 BU579620 CD675663 AK131539 BQ436053 BI905791 AI873679 BM668122 BQ066273 BM972633 BU183396 BC008884 BC020395 AI440501 BG912405 CD675007 BI324840
GeneLoc Exon Structure
5/24 Alternative Splicing Database (ASD) splice patterns (SP) for TNK2 (see all 24) About this scheme
| ExUns: | 1 | ^ | 2 | ^ | 3a | · | 3b | · | 3c | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8a | · | 8b | ^ | 9 | ^ | 10a | · | 10b | ^ | 11 | ^ | 12 | ^ | 13a | · | 13b | · | 13c | ^ | 14a | · | 14b | · | 14c | ^ | 15 | ^ | 16a | · | 16b | ^ | 17a | · |
|---|
|
| SP1: | | | | | | | | | | | | | - | | - | | - | | - | | - | | - | | | | | | | | - | | | | | | | | | | | | | | - | | | | | | | | |
| SP2: | | | | | | | | | | | | | | | | | | | - | | - | | | | | | | | | | - | | | | | | | | | | | | | | | | | | | | | | |
| SP3: | | | | | | | | | | | | | | | | | | | | | | | - | | | | | | | | - | | | | | | | | | | | | | | - | | | | | | | | |
| SP4: | | | - | | - | | - | | - | | - | | - | | - | | - | | - | | - | | - | | | | | | | | - | | | | | | | | | | | | | | - | | | | | | | | |
| SP5: | | | | | | | | | | | - | | - | | - | | - | | - | | - | | - | | | | | | | | - | | | | | | | | | | | | | | | | | | | | | |
| ExUns: | 17b | · | 17c | ^ | 18 | ^ | 19a | · | 19b | ^ | 20a | · | 20b | · | 20c | · | 20d | ^ | 21 | ^ | 22a | · | 22b | ^ | 23a | · | 23b | · | 23c | · | 23d | · | 23e | · | 23f | ^ | 24 | ^ | 25 | ^ | 26 | ^ | 27a | · | 27b | ^ | 28 | ^ | 29a | · | 29b | ^ |
|---|
|
| SP1: | | | | | | | | | | | - | | - | | - | | - | | - | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP2: | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP3: | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP4: | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP5: | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| ExUns: | 30 | ^ | 31 | ^ | 32 | ^ | 33a | · | 33b | ^ | 34 |
|---|
|
| SP1: | | | | | | | | | | | | | |
| SP2: | | | | | | | | | | | | | |
| SP3: | | | | | | | | | | | | | |
| SP4: | | | | | | | | | | | | | |
| SP5: | | | | | | | | | | | | |
ECgene alternative splicing isoforms for TNK2
|
Expression
for TNK2 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| TNK2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
See TNK2 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for TNK2
SOURCE GeneReport for Unigene cluster: Hs.518513
UniProtKB/Swiss-Prot: ACK1_HUMAN, Q07912Tissue specificity: The Tyr-284 phosphorylated form shows a significant increase in expression in breast cancers duringthe progressive stages i.e. normal to hyperplasia (ADH), ductal carcinoma in situ (DCIS), invasive ductal carcinoma(IDC) and lymph node metastatic (LNMM) stages. It also shows a significant increase in expression in prostate cancersduring the progressive stages
SABiosciences Custom PCR Arrays for TNK2
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for TNK2
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat TNK2 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TNK2 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TNK2 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TNK2 |
Orthologs
for TNK2 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for TNK2 gene from 6/18 species (see all 18) About this table
ENSEMBL Gene Tree for TNK2 (if available)
TreeFam Gene Tree for TNK2 (if available) |
Paralogs
for TNK2 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for TNK2 gene
- SYK2 TNK12 JAK22 JAK32 TYK22 ERBB42 JAK12 ERBB32
- PTK22 ERBB22 ZAP702 PTK2B2 EGFR2
18/45 SIMAP similar genes for TNK2 using alignment to 10 protein entries: ACK1_HUMAN (see all proteins)
(see all similar genes):SRC PTK2 FRK EPHA2 FYN HCK
ERBB2 EGFR ERBB4 EPHA5 JAK2 FES
EPHA3 EPHA6 EZR-ROS1 FGR TYK2 BLK
TNK2 for paralogs About GeneDecksing
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Genomic Variants
for TNK2 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 3 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for TNK2 (195590235 - 195638816 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 11 variations for TNK2
8 CNVs: 63712 68552 80089 3472 80090 91824 8439 4367
1 Indel: 27271
2 Inversions: 37243 0568 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TNK2 |
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Disorders
/ Diseases
for TNK2 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database, Novoseek,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
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TNK2 for disorders About GeneDecksing
OMIM gene information: 606994
OMIM disorders: --
13  diseases for TNK2: About MalaCardswiskott-aldrich syndrome ebd ductal carcinoma in situ prostate cancer
prostate cancer, progression of hepatitis c prostatitis gastric cancer
breast cancer hepatitis carcinoma esophagitis
melanoma
5 Novoseek disease relationships for TNK2 gene About this table
Human Genome Epidemiology (HuGE) Navigator: TNK2 (2 documents)
Export disorders for TNK2 gene to outside databases
|
Publications
for TNK2 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for TNK2 gene, integrated from 9 sources (see all 90):
(articles sorted by number of sources associating them with TNK2) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- A non-receptor tyrosine kinase that inhibits the GTPase activity of p21cdc42. (PubMed id 8497321)1, 2, 3 Manser E.... Lim L. (1993)
- Biochemical properties of the Cdc42-associated tyrosine kinase ACK1. Substrate specificity, authphosphorylation, and interaction with Hck. (PubMed id 14506255)1, 3, 9 Yokoyama N. and Miller W.T. (2003)
- Down-regulation of active ACK1 is mediated by association with the E3 ubiquitin ligase Nedd4-2. (PubMed id 19144635)1, 2, 9 Chan W....Manser E. (2009)
- Cytoplasmic ACK1 interaction with multiple receptor t yrosine kinases is mediated by Grb2: an analysis of ACK1 effects on Axl signali ng. (PubMed id 19815557)1, 2, 9 Pao-Chun L....Manser E. (2009)
- Activated tyrosine kinase Ack1 promotes prostate tumorigenesis: role of Ack1 in polyubiquitination of tumor suppressor Wwox. (PubMed id 16288044)1, 2, 9 Mahajan N.P.... Earp H.S. (2005)
- Dysregulation of Ack1 inhibits down-regulation of the EGF receptor. (PubMed id 18262180)1, 2, 9 Grovdal L.M....Stang E. (2008)
- SNX9 as an adaptor for linking synaptojanin-1 to the Cdc42 effector ACK1. (PubMed id 16137687)1, 2, 9 Yeow-Fong L....Manser E. (2005)
- Phosphorylation of WASP by the Cdc42-associated kinase ACK1: dual hydroxyamino acid specificity in a tyrosine kinase. (PubMed id 16257963)1, 2, 9 Yokoyama N....Miller W.T. (2005)
- Activated Cdc42-associated kinase Ack1 promotes prostate cancer progression via androgen receptor tyrosine phosphorylation. (PubMed id 17494760)1, 2, 9 Mahajan N.P....Whang Y.E. (2007)
- Shepherding AKT and androgen receptor by Ack1 tyrosin e kinase. (PubMed id 20432460)1, 2, 9 Mahajan K. and Mahajan N.P. (2010)
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External Searches for TNK2 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing TNK2 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
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|
|
Other Databases showing TNK2 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing TNK2 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for TNK2 | Pharmacogenomics, SNPs, Pathways | | CGP resequencing studies | http://www.sanger.ac.uk/perl/genetics/CGP/cgp_viewer?action=gene&ln=ACK1 |
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About This Section
| Patent Information for TNK2 gene:
Search GeneIP for patents involving TNK2
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for TNK2 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
|
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