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TNFSF15 Gene

protein-coding   GIFtS: 62

GC09M116591
tumor necrosis factor (ligand) superfamily, member 15
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
MGC129934 1, 2
MGC129935 1, 2
OTTHUMP00000022739 2
TL1 1, 2, 3, 5
TL1A 1, 2
VEGI 1, 2, 3, 5
VEGI192A 1, 2
Descriptions
TNF ligand-related molecule 1 2, 3
TNF superfamily ligand TL1A 2
Vascular endothelial cell growth inhibitor 2, 3
tumor necrosis factor (ligand) superfamily, member 15 2
vascular endothelial growth inhibitor-192A 2
External Ids
HGNC: 119311
Entrez Gene: 99662
UniProtKB: O951503
Ensembl: ENSG000001816347
Search outside databases for aliases for TNFSF15 gene

Previous GC identifers: GC09M108349 GC09M109283 GC09M111005 GC09M112927 GC09M114632

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for TNFSF15:
The protein encoded by this gene is a cytokine that belongs to the tumor necrosis factor (TNF)
ligand family. This protein is abundantly expressed in endothelial cells, but is not expressed in
either B or T cells. The expression of this protein is inducible by TNF and IL-1 alpha. This
cytokine is a ligand for receptor TNFRSF25 and decoy receptor TNFRSF21/DR6. It can activate
NF-kappaB and MAP kinases, and acts as an autocrine factor to induce apoptosis in endothelial
cells. This cytokine is also found to inhibit endothelial cell proliferation, and thus may
function as an angiogenesis inhibitor. An additional isoform encoded by an alternatively spliced
transcript variant has been reported but the sequence of this transcript has not been determined.
[provided by RefSeq]

UniProtKB/Swiss-Prot: TNF15_HUMAN, O95150
Function: Receptor for TNFRSF25 and TNFRSF6B. Mediates activation of NF-kappa-B. Inhibits vascular
endothelial growth and angiogenesis (in vitro). Promotes activation of caspases and apoptosis

Gene Wiki entry for TNFSF15 (Vascular_endothelial_growth_inhibitor)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the TNFSF15 gene  

Entrez Gene cytogenetic band: 9q32   Ensembl cytogenetic band:  9q32   HGNC cytogenetic band: 9q32

TNFSF15 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 9         GeneLoc Exon Structure

GeneLoc location for GC09M116591:     (about GC identifiers)

Start:
116,591,421 bp from pter
End:
116,608,233 bp from pter
Size:
16,813 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000009.10  NT_008470.18  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: TNF15_HUMAN, O95150 (See protein sequence)
Recommended Name: Tumor necrosis factor ligand superfamily member 15  
Size: 251 amino acids; 28087 Da
Subunit: Homotrimer
Subcellular location: Membrane; Single-pass type II membrane protein (Probable)
Subcellular location: Tumor necrosis factor ligand superfamily member 15, secreted form: Secreted
PDB structures from and Proteopedia :
2O0O (3D)    2QE3 (3D)    2RE9 (3D)    2RJK (3D)    2RJL (3D)    
Secondary accessions: Q3SX69 Q5VJK8 Q5VWH1 Q8NFE9
Alternative splicing: 3 isoforms:  O95150-1   O95150-2   O95150-3   

REFSEQ proteins: NP_005109.2  

ENSEMBL proteins: 
ENSP00000363156 ENSP00000363157 


Human Recombinant Proteins 
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R&D Systems Recombinant & Natural Proteins for TNFSF15 (TL1A/TNFSF15)
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (TL1A)
Human Recombinant Proteins from Abnova (TNFSF15)
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

4 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005576 extracellular region IEA--
GO:0005615 extracellular space IEA--
GO:0005886 plasma membrane IDA11911831
GO:0005887 integral to plasma membrane TAS9872942
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Antibodies for TNFSF15: 
Invitrogen Antibodies for TNFSF15
Millipore Mono- and Polyclonal Antibodies for the study of TNFSF15
Sigma-Aldrich Antibodies for TNFSF15
R&D Systems Antibodies for TNFSF15 (TL1A/TNFSF15)
Antibodies from Abcam (TL1A), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (TNFSF15)
Novus Biologicals Antibodies for TNFSF15

Assays for TNFSF15: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

3 InterPro domains/families:
 IPR006052 TNF_family
 IPR006053 TNF_abc
 IPR008983 Tumour_necrosis_fac-like


   GeneDecks  TNFSF15 for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry O95150

ProtoNet protein and cluster: O95150

1 Blocks protein family: IPB006052 Tumor Necrosis Factor

UniProtKB/Swiss-Prot: TNF15_HUMAN, O95150
Similarity: Belongs to the tumor necrosis factor family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (TNFSF15)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (TNFSF15)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005118

              Applied Biosystems Silencer® siRNAs for TNFSF15

              Sigma-Aldrich siRNA and siRNA Panels for TNFSF15  
                     Sigma-Aldrich shRNA Panels and shRNA for TNFSF15  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for TNFSF15
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005118
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_005118
                                 untagged cDNA clone in CMV expression vector: NM_005118 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_005118

UniProtKB/Swiss-Prot: TNF15_HUMAN, O95150
Function: Receptor for TNFRSF25 and TNFRSF6B. Mediates activation of NF-kappa-B. Inhibits vascular
endothelial growth and angiogenesis (in vitro). Promotes activation of caspases and apoptosis
Induction: Up-regulated by IL-1-alpha and TNF-alpha

Genatlas biochemistry entry for TNFSF15:
tumor necrosis factor (ligand) superfamily,member 15,expressed in hematopoietic cells

2 MGI mutant phenotypes (inferred from 1 allele(MGI details for Tnfsf15):

hematopoietic systemimmune system

2 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005125 cytokine activity IEA--
GO:0005164 tumor necrosis factor receptor binding IEA--
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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1 Invitrogen iPath™ Online BioAtlas - Pathway for TNFSF15 (Maps provided by GeneGo):
 Anti-apoptotic TNFs/NF-kB/IAP pathway

   GeneDecks  TNFSF15 for the pathways selected above  
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1 Millipore Pathway for TNFSF15
 Apoptosis and survival Anti-apoptotic TNFs/NF-kB/IAP pathway

   GeneDecks  TNFSF15 for the pathways selected above  
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for  TNFSF15  (Your Favorite Gene powered by Ingenuity) 
 Death Receptor Signaling

   GeneDecks  TNFSF15 for the pathways selected above  
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1 Kegg Pathway  (Kegg details for TNFSF15):
 hsa04060 Cytokine-cytokine receptor interaction

   GeneDecks  TNFSF15 for the pathways selected above  
About GeneDecksing
 Gene Network CentralTM Interacting Genes and Proteins Network for  TNFSF15 


5/7 Interacting proteins for TNFSF15 (ENSP000003631573) via UniProtKB, MINT, and/or STRING (see all 7 )
InteractantInteraction Details
GeneCardExternal ID(s)
RTEL1ENSP000003492653STRING (score=.994)
PLEKHG5ENSP000003669773STRING (score=.951)
TNFSF8ENSP000002237953STRING (score=.912)
LITAFENSP000003712313STRING (score=.891)
TNFSF13ENSP000002938263STRING (score=.832)
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5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0001937 negative regulation of endothelial cell proliferation IDA12345
GO:0006919 activation of caspase activity IDA11911831
GO:0006955 immune response IEA--
GO:0007165 signal transduction NAS9872942
GO:0007250 activation of NF-kappaB-inducing kinase activity IDA11911831
About this table
(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for TNFSF15

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (TNFSF15)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (TNFSF15)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005118

              Sigma-Aldrich siRNA and siRNA Panels for TNFSF15  
                     Sigma-Aldrich shRNA Panels and shRNA for TNFSF15  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_005118  

REFSEQ mRNAs for TNFSF15 gene: 

NM_005118.2   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_005118  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005118
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_005118
                                 untagged cDNA clone in CMV expression vector: NM_005118 

Additional cDNA sequence: 

AF520785.1 AK291642.1 AK313721.1 AY434464.1 BC069435.1 BC074940.2 BC074941.2 BC104462.1 
BC104463.1 

1 DOTS entry:

DT.99997095 

6 AceView cDNA sequences:

NM_005118 BC074940 BC069435 BC074941 AF039390 AF520785 

highest scoring ESTs for TNFSF15:

AF520785 BC069435 BC074940 BC074941 CN289458 NM_005118 AF039390 AY434464 BC104462 BC104463 

Unigene Cluster for TNFSF15:

Tumor necrosis factor (ligand) superfamily, member 15
Hs.241382  [show with all ESTs]
Unigene Representative Sequence: AF520785


GeneLoc Exon Structure

2 Ensembl transcripts including schematic representations:
ENST00000374044  ENST00000374045  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

TNFSF15 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for TNFSF15

1 / 2 / 3

2 probe-sets matching TNFSF15 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

221085_at2, 3 U133-A 1 1.00 1.00 -- -- NM_005118 0.60 1.00 0.82 1

221085_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
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Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: TATATCAAAA

SOURCE GeneReport for Unigene cluster: Hs.241382

UniProtKB/Swiss-Prot: TNF15_HUMAN, O95150
Tissue specificity: Specifically expressed in endothelial cells. Detected in monocytes, placenta,
lung, liver, kidney, skeletal muscle, pancreas, spleen, prostate, small intestine and colon

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for TNFSF15 gene from 5/6 species (see all 6 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
TNFSF151   -- tumor necrosis factor (ligand) superfamily, member more 82.87(n)
80.08(a)
481688  XM_862674.1  XP_867767.1 
chimpanzee
(Pan troglodytes)
TNFSF151   -- tumor necrosis factor (ligand) superfamily, member more 99.34(n)
99.2(a)
473468  XM_528839.2  XP_528839.2 
cow
(Bos taurus)
TNFSF151   -- tumor necrosis factor (ligand) superfamily, member more 86.27(n)
83.2(a)
514239  XM_592054.3  XP_592054.2 
rat
(Rattus norvegicus)
Tnfsf151   -- tumor necrosis factor (ligand) superfamily, member more 79.35(n)
70.85(a)
252878  NM_145765.1  NP_665708.1 
mouse
(Mus musculus)
Tnfsf151, 5 45
tumor necrosis factor (ligand) superfamily, member more1, 5 78.41(n)1
67.61(a)1
3266231  NM_177371.21  NP_796345.21 
 AF5207865  AY7641305  (see all 8)
About this table        Species with no ortholog for TNFSF15

ENSEMBL Gene Tree for TNFSF15
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for TNFSF15 gene
FASLG2  ENSG000002044962  TNF2  TNFSF142  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/106 NCBI SNPs in TNFSF15 are shown (see all 106 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 56)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 9 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs14073081,2
A,C,F,H,O116610044(+) AACTGT/GTATTC 1 -- ng3111Minor allele frequency- G:0.23EU EA WA NA 978
rs64781091,2
A,C,F,H116608587(+) TGCAGG/ATTGGG 1 -- ng317Minor allele frequency- A:0.30NA EU EA WA 556
rs126828811,2
A,C,F,H116591274(+) TTAACC/TAGGTA 1 -- ng514Minor allele frequency- T:0.03EU EA WA 416
rs78486471,2
A,C,F,H116608867(+) GAGTAC/TGAGGC 1 -- ng317Minor allele frequency- T:0.30EU EA WA NA 558
rs18918361,2
C,F,H116591076(-) ATATGG/AGATTA 1 -- ng514Minor allele frequency- A:0.03EU EA WA 416
rs169317451,2
C,F,H116592979(+) TTTTTA/TAAGTG 1 F/L mis111Minor allele frequency- T:0.01NA EU EA WA 978
rs169317391,2
C,F,H116592012(+) CTGTGT/CGAACA 1 -- ut31 ese311Minor allele frequency- C:0.02NA EU EA WA 978
rs126828861,2
C,F,H116591340(+) GCTATC/GTTCCA 1 -- ng5111Minor allele frequency- G:0.01EU EA WA NA 978
rs126829521,2
C,H116592062(+) CAAGGC/TATGAA 1 -- ut31 ese34Minor allele frequency- T:0.00EU EA WA 420
rs78626881,2
A,H116609140(+) ACAGAC/GGGCAA 1 -- ng314Minor allele frequency- G:0.00EU EA WA 418
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HapMap Linkage Disequilibrium images for TNFSF15 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 604052

3 Novoseek disease relationships for TNFSF15 gene

Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
colitis ulcerative 48.95 3 19262684 (1), 14568967 (1)
inflammation 39.73 14 19262684 (2), 15207783 (2), 18598698 (2), 18287561 (2) (see all 6)
inflammatory bowel diseases 27.86 4 14568967 (2), 15207783 (1)
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Human Gene Mutation Database: TNFSF15
Genetic Association Database: TNFSF15
Human Genome Epidemiology Navigator: TNFSF15 (8 documents)

(Possibly Related Articles in Doctor's Guide)
About This Section

  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/46 PubMed articles for TNFSF15 gene (see all 46 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 9966 HGNC: 11931 AceView: TNFSF15 Ensembl:ENSG00000181634 euGenes: HUgn9966
ECgene: TNFSF15 H-InvDB: TNFSF15
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

NameDescription
ATLAS Chromosomes in Cancer entry for TNFSF15 Genetics and Cytogenetics in Oncology and Haematology
(Available from WIS Yeda, Salk, Tufts)
About This Section

  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for TNFSF15:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



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 "Your Favorite Gene" Pathwaysfeedback


  
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 Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
 Antibodies for TNFSF15

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