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Aliases & Descriptions for TNFSF15
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| MGC129934 1, 2 | | MGC129935 1, 2 | | OTTHUMP00000022739 2 | | TL1 1, 2, 3, 5 | | TL1A 1, 2 | | VEGI 1, 2, 3, 5 | | VEGI192A 1, 2 |
| | | Descriptions |
|---|
| TNF ligand-related molecule 1 2, 3 | | TNF superfamily ligand TL1A 2 | | Vascular endothelial cell growth inhibitor 2, 3 | | tumor necrosis factor (ligand) superfamily, member 15 2 | | vascular endothelial growth inhibitor-192A 2 |
|
| | Search outside databases for aliases for TNFSF15 genePrevious GC identifers: GC09M108349 GC09M109283 GC09M111005 GC09M112927 GC09M114632 |
Summaries for TNFSF15(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for TNFSF15: The protein encoded by this gene is a cytokine that belongs to the tumor necrosis factor (TNF) ligand family. This protein is abundantly expressed in endothelial cells, but is not expressed in either B or T cells. The expression of this protein is inducible by TNF and IL-1 alpha. This cytokine is a ligand for receptor TNFRSF25 and decoy receptor TNFRSF21/DR6. It can activate NF-kappaB and MAP kinases, and acts as an autocrine factor to induce apoptosis in endothelial cells. This cytokine is also found to inhibit endothelial cell proliferation, and thus may function as an angiogenesis inhibitor. An additional isoform encoded by an alternatively spliced transcript variant has been reported but the sequence of this transcript has not been determined. [provided by RefSeq] UniProtKB/Swiss-Prot: TNF15_HUMAN, O95150Function: Receptor for TNFRSF25 and TNFRSF6B. Mediates activation of NF-kappa-B. Inhibits vascular endothelial growth and angiogenesis (in vitro). Promotes activation of caspases and apoptosisGene Wiki entry for TNFSF15 (Vascular_endothelial_growth_inhibitor) |
Genomic Location for TNFSF15
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the TNFSF15 gene 
Entrez Gene cytogenetic band: 9q32 Ensembl cytogenetic band: 9q32 HGNC cytogenetic band: 9q32TNFSF15 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 9 GeneLoc Exon Structure GeneLoc location for GC09M116591:
(about GC identifiers)
Start:
|
116,591,421 bp from pter |
End:
|
116,608,233 bp from pter |
Size:
|
16,813 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000009.10 NT_008470.18
| Proteins for TNFSF15
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: TNF15_HUMAN, O95150 (See
protein sequence)Recommended Name: Tumor necrosis factor ligand superfamily member 15 Size: 251 amino acids; 28087 Da
Subunit: Homotrimer
Subcellular location: Membrane; Single-pass type II membrane protein (Probable)
Subcellular location: Tumor necrosis factor ligand superfamily member 15, secreted form: Secreted
PDB structures from and Proteopedia :2O0O (3D)
 2QE3 (3D)
 2RE9 (3D)
 2RJK (3D)
 2RJL (3D)
 
Secondary accessions: Q3SX69 Q5VJK8 Q5VWH1 Q8NFE9Alternative splicing: 3 isoforms: O95150-1 O95150-2 O95150-3 REFSEQ proteins: NP_005109.2
ENSEMBL proteins: ENSP00000363156 ENSP00000363157
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for TNFSF15:  | Invitrogen Antibodies for TNFSF15 |  | Millipore Mono- and Polyclonal Antibodies for the study of TNFSF15 |  | Sigma-Aldrich Antibodies for TNFSF15 |  | R&D Systems Antibodies for TNFSF15 (TL1A/TNFSF15) |  | Antibodies from Abcam (TL1A), each with their AbpromiseSM |  | Monoclonal and Polyclonal Antibodies from Abnova (TNFSF15) |  | Novus Biologicals Antibodies for TNFSF15 |
Assays for TNFSF15: | Protein
Domains/ Families for TNFSF15(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry O95150
ProtoNet protein and cluster: O95150 1 Blocks protein family: IPB006052 Tumor Necrosis Factor
UniProtKB/Swiss-Prot: TNF15_HUMAN, O95150Similarity: Belongs to the tumor necrosis factor family | Gene Function for TNFSF15
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005118
Applied Biosystems Silencer® siRNAs for TNFSF15
Sigma-Aldrich siRNA and siRNA Panels for TNFSF15  Sigma-Aldrich shRNA Panels and shRNA for TNFSF15  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005118                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005118                                  untagged cDNA clone in CMV expression vector: NM_005118 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005118
UniProtKB/Swiss-Prot: TNF15_HUMAN, O95150Function: Receptor for TNFRSF25 and TNFRSF6B. Mediates activation of NF-kappa-B. Inhibits vascular endothelial growth and angiogenesis (in vitro). Promotes activation of caspases and apoptosisInduction: Up-regulated by IL-1-alpha and TNF-alphaGenatlas biochemistry entry for TNFSF15:tumor necrosis factor (ligand) superfamily,member 15,expressed in hematopoietic cells2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Tnfsf15):
2 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005125 | cytokine activity |
IEA | -- | | GO:0005164 | tumor necrosis factor receptor binding |
IEA | -- | About this table | Pathways & Interactions for TNFSF15
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
1 Sigma-Aldrich "Your Favorite Gene" Pathway for TNFSF15 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for TNFSF15 
5/7 Interacting proteins for TNFSF15 (ENSP000003631573) via UniProtKB, MINT, and/or STRING (see all 7
)About this table
5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6
): About this table
|
Drugs & Compounds for TNFSF15(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for TNFSF15
|
Transcripts for TNFSF15(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005118
Sigma-Aldrich siRNA and siRNA Panels for TNFSF15  Sigma-Aldrich shRNA Panels and shRNA for TNFSF15  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_005118 REFSEQ mRNAs for TNFSF15 gene: NM_005118.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005118               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005118                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005118                                  untagged cDNA clone in CMV expression vector: NM_005118  Additional cDNA sequence: AF520785.1 AK291642.1 AK313721.1 AY434464.1 BC069435.1 BC074940.2 BC074941.2 BC104462.1 BC104463.1 1 DOTS entry: DT.99997095 6 AceView cDNA sequences:NM_005118 BC074940 BC069435 BC074941 AF039390 AF520785
highest scoring ESTs for TNFSF15:AF520785 BC069435 BC074940 BC074941 CN289458 NM_005118 AF039390 AY434464 BC104462 BC104463 Unigene Cluster for TNFSF15: Tumor necrosis factor (ligand) superfamily, member 15 Hs.241382 [show with all ESTs]Unigene Representative Sequence: AF520785
GeneLoc Exon Structure
2 Ensembl transcripts including schematic representations: ENST00000374044
ENST00000374045
|
Expression for TNFSF15
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| TNFSF15 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for TNFSF15
1 / 2 / 3 2 probe-sets matching TNFSF15 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TATATCAAAA
SOURCE GeneReport for Unigene cluster: Hs.241382 UniProtKB/Swiss-Prot: TNF15_HUMAN, O95150Tissue specificity: Specifically expressed in endothelial cells. Detected in monocytes, placenta, lung, liver, kidney, skeletal muscle, pancreas, spleen, prostate, small intestine and colon |
Orthologs for TNFSF15
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for TNFSF15 gene from 5/6 species (see all 6
)
About this table Species with no ortholog for TNFSF15
ENSEMBL Gene Tree for TNFSF15 | Paralogs for TNFSF15(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for TNFSF15 gene
- FASLG2 ENSG000002044962 TNF2 TNFSF142
|
SNPs/Variants for TNFSF15(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for TNFSF15 (up to first 250kb)
|
Disorders & Mutations for TNFSF15
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 604052
3 Novoseek disease relationships for TNFSF15 gene
About this table
Human Gene Mutation Database: TNFSF15 Genetic Association Database: TNFSF15 Human Genome Epidemiology Navigator: TNFSF15 (8 documents)
|
Medical News for TNFSF15(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for TNFSF15 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/46 PubMed articles for TNFSF15 gene (see all 46
):- Characterization of a novel TNF-like ligand and recently described TNF ligand and TNF receptor superfamily genes and their constitutive and inducible expression in hematopoietic and non-hematopoietic cells. (PubMed id 9434163)2, 3, 4 Tan K.B....Truneh A. (1997)
- TL1A is a TNF-like ligand for DR3 and TR6/DcR3 and functions as a T cell costimulator. (PubMed id 11911831)1, 3, 4 Migone T.S.... Wei P. (2002)
- X-ray crystal structure of TNF ligand family member TL1A at 2.1A. (PubMed id 17935696)3, 4 Jin T....Zhang Y.Z. (2007)
- Single nucleotide polymorphisms in TNFSF15 confer susceptibility to Crohn's disease. (PubMed id 16221758)3, 6 Yamazaki K....Nakamura Y. (2005)
- A novel secreted splice variant of vascular endothelial cell growth inhibitor. (PubMed id 11923219)3, 4 Chew L.J....Li L.Y. (2002)
- VEGI, a novel cytokine of the tumor necrosis factor family, is an angiogenesis inhibitor that suppresses the growth of colon carcinomas in vivo. (PubMed id 9872942)3, 4 Zhai Y.... Yu G.-L. (1999)
- VEGI, a new member of the TNF family activates nuclear factor-kappa B and c-Jun N-terminal kinase and modulates cell growth. (PubMed id 10597252)3, 4 Haridas V....Aggarwal B.B. (1999)
- IBD-associated TL1A gene (TNFSF15) haplotypes determine increased expression of TL1A protein. (PubMed id 19262684)1, 3 Michelsen K.S....Targan S.R. (2009)
- Circulating levels of TNF-like cytokine 1A (TL1A) and its decoy receptor 3 (DcR3) in rheumatoid arthritis. (PubMed id 18757243)1, 3 Bamias G....Sfikakis P.P. (2008)
- TL1A both promotes and protects from renal inflammation and injury. (PubMed id 18287561)1, 3 Al-Lamki R.S....Bradley J.R. (2008)
|
Search for TNFSF15
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing TNFSF15
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing TNFSF15
(According to HUGE)
About This Section
| -- |
Specialized Databases showing TNFSF15(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for TNFSF15(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for TNFSF15:

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Incremental update: 13 Oct 2009
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