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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

TNFSF13 Gene

protein-coding GIFtS: 66
GCID: GC17P007461

tumor necrosis factor (ligand) superfamily, member 13

Explore 54 diseases affiliated with
TNFSF13 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Tumor Necrosis Factor (Ligand) Superfamily, Member 13¹ ²		ZTNF2² ³
APRIL¹ ² ³		TNF- And APOL-Related Leukocyte Expressed Ligand 2² ³
CD256¹ ²		Tumor Necrosis Factor Ligand Superfamily Member 13²
A Proliferation-Inducing Ligand² ³		Tumor Necrosis Factor-Like Protein ZTNF2²
TALL-2² ³		Tumor Necrosis Factor-Related Death Ligand-1²
TALL2² ³		CD256 Antigen³
TRDL-1² ³		TNF-Related Death Ligand 1³

External Ids:	HGNC: 11928¹	Entrez Gene: 8741²	Ensembl: ENSG00000161955⁷	OMIM: 604472⁵	UniProtKB: O75888³

Export aliases for TNFSF13 gene to outside databases

Previous GC identifers: GC17P007876 GC17P008201 GC17P007396 GC17P007653 GC17P007654 GC17P007397 GC17P007398 GC17P007399 GC17P007402 GC17P007392 GC17P007355

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for TNFSF13:

The protein encoded by this gene is a member of the tumor necrosis factor (TNF) ligand family. This protein is a ligand

for TNFRSF17/BCMA, a member of the TNF receptor family. This protein and its receptor are both found to be important

for B cell development. In vitro experiments suggested that this protein may be able to induce apoptosis through its

interaction with other TNF receptor family proteins such as TNFRSF6/FAS and TNFRSF14/HVEM. Alternative splicing

results in multiple transcript variants. Some transcripts that skip the last exon of the upstream gene (TNFSF12) and

continue into the second exon of this gene have been identified; such read-through transcripts are contained in GeneID

407977, TNFSF12-TNFSF13. (provided by RefSeq, Oct 2010)

UniProtKB/Swiss-Prot: TNF13_HUMAN, O75888

Function: Cytokine that binds to TNFRSF13B/TACI and to TNFRSF17/BCMA. May be implicated in the regulation of tumor cell

growth. May be involved in monocyte/macrophage-mediated immunological processes

Gene Wiki entry for TNFSF13

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000017.10 NC_018928.1 NT_010718.16

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the TNFSF13 gene promoter:
CREB PPAR-gamma1 AP-1 deltaCREB MyoD PPAR-gamma2
Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids

Search SABiosciences Chromatin IP Primers for TNFSF13

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TNFSF13

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17p13.1 Ensembl cytogenetic band: 17p13.1 HGNC cytogenetic band: 17p13.1

TNFSF13 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TNFSF13 gene location

GeneLoc information about chromosome 17 GeneLoc Exon Structure

GeneLoc location for GC17P007461: view genomic region (about GC identifiers)

Start:	7,461,609 bp from pter	End:	7,464,925 bp from pter
Size:	3,317 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: TNF13_HUMAN, O75888 (See protein sequence)

Recommended Name: Tumor necrosis factor ligand superfamily member 13 precursor

Size: 250 amino acids; 27433 Da

Subunit: Homotrimer (Potential)

Subcellular location: Secreted

Secondary accessions: B4DVT2 Q541E1 Q5U0G8 Q96HV6 Q9P1M8 Q9P1M9

Alternative splicing: 5 isoforms: O75888-1 O75888-2 O75888-3 O75888-4 O43508-2 (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for TNFSF13: NX_O75888

Post-translational modifications:

The precursor is cleaved by furin¹

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_O75888

TNFSF13 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins (6 alternative transcripts):

NP_001185551.1 NP_001185552.1 NP_001185553.1 NP_003799.1 NP_742084.1 NP_742085.1

ENSEMBL proteins:

ENSP00000464998 ENSP00000379792 ENSP00000390771 ENSP00000410094 ENSP00000314455

ENSP00000343505 ENSP00000379794 ENSP00000369908

Reactome Protein details: O75888
Human Recombinant Protein Products for TNFSF13:

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	Uscn Proteins for TNFSF13

Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005615	extracellular space	IEA	--
GO:0005654	nucleoplasm	TAS	--
GO:0005829	cytosol	TAS	--
GO:0009897	external side of plasma membrane	IEA	--
GO:0016020	membrane	--	--

TNFSF13 for ontologies About GeneDecksing

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

TNFSF13 for domains About GeneDecksing

3 InterPro domains/families:

IPR006052 TNF

IPR008983 Tumour_necrosis_fac-like_dom

IPR021184 TNF_CS

Graphical View of Domain Structure for InterPro Entry O75888

ProtoNet protein and cluster: O75888

1 Blocks protein family: IPB006052 Tumor Necrosis Factor

UniProtKB/Swiss-Prot: TNF13_HUMAN, O75888

Similarity: Belongs to the tumor necrosis factor family

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Molecular Function:

UniProtKB/Swiss-Prot Summary: TNF13_HUMAN, O75888

Function: Cytokine that binds to TNFRSF13B/TACI and to TNFRSF17/BCMA. May be implicated in the regulation of tumor cell

growth. May be involved in monocyte/macrophage-mediated immunological processes

Induction: Down-regulated by phorbol myristate acetate/ionomycin treatment

Genatlas biochemistry entry for TNFSF13:

tumor necrosis factor,ligand,superfamily,member 13,highly expressed in transformed cell lines and in diverse human

cancers putative regulator of tumor cell growth

Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005102	receptor binding	TAS	9743536
GO:0005125	cytokine activity	IEA	--
GO:0005164	tumor necrosis factor receptor binding	IEA	--

TNFSF13 for ontologies About GeneDecksing

Phenotypes:
2 GenomeRNAi human phenotypes for TNFSF13:

G0/1 arrest

Increased G1 DNA content

5 MGI mutant phenotypes (inferred from 3 alleles) (MGI details for Tnfsf13):

cellular

hematopoietic system

immune system

normal

skeleton

TNFSF13 for phenotypes About GeneDecksing

Animal Models:
Mouse knock-outs for TNFSF13: Tnfsf13^tm1Pod Tnfsf13^tm1Ash Tnfsf13^tm1Geha

inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for TNFSF13

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In Situ Assay
Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TNFSF13

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Unified GeneCards pathways - 5/13 super-pathways (see all 13) About this table

See pathways by source

Super-pathway

contained gene-specific pathways

PEDF Induced Signaling

8/9 pathways (see all 9)
PEDF Induced Signaling	1.00	RAR-Gamma-RXR-Alpha Degradation	0.54
MIF Mediated Glucocorticoid Regulation	0.73	STAT3 Pathway	0.47
MIF Regulation of Innate Immune Cells	0.71	Endothelin-1 Signaling Pathway	0.44
IL-6 Pathway	0.61	Cytokine-cytokine receptor interaction	0.26

Apoptosis and survival_Anti-apoptotic TNFs/NF-kB/Bcl-2 pathway

	Apoptosis and survival Anti-apoptotic TNFs/NF-kB/Bcl-2 pathway	1.00			Apoptosis and survival_Anti-apoptotic TNFs/NF-kB/IAP pathway	0.46
	Apoptosis and survival_Anti-apoptotic TNFs/NF-kB/Bcl-2 pathway	1.00			Apoptosis and survival Anti-apoptotic TNFs/NF-kB/IAP pathway	0.46

Rho Family GTPases

	Rho Family GTPases	1.00			Molecular Mechanisms of Cancer	0.51
	ERK Signaling	0.61

TRAF Pathway

	TRAF Pathway	1.00			TNF Superfamily - Human Ligand-Receptor Interactions & their Associated Functions	0.08
	TNF Superfamily Pathway	0.42

BAFF in B-Cell Signaling

	APRIL Pathway	0.92			Apoptosis and survival APRIL and BAFF signaling	0.39
	Apoptosis and survival_APRIL and BAFF signaling	0.39

Pathway sources
See GeneCards unified pathways
Show all pathways

3 EMD Millipore Pathways for TNFSF13

	Apoptosis and survival Anti-apoptotic TNFs/NF-kB/Bcl-2 pathway
	Apoptosis and survival APRIL and BAFF signaling
	Apoptosis and survival Anti-apoptotic TNFs/NF-kB/IAP pathway

1 R&D Systems Pathway for TNFSF13

TNF Superfamily - Human Ligand-Receptor Interactions & their Associated Functions

5/18 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for TNFSF13 (see all 18)

	TRAF Pathway
	Endothelin-1 Signaling Pathway
	Molecular Mechanisms of Cancer
	Antioxidant Action of Vitamin-C
	APRIL Pathway

3 GeneGo (Thomson Reuters) Pathways for TNFSF13

	Apoptosis and survival Anti-apoptotic TNFs/NF-kB/IAP pathway
	Apoptosis and survival APRIL and BAFF signaling
	Apoptosis and survival Anti-apoptotic TNFs/NF-kB/Bcl-2 pathway

5/6 Reactome Pathways for TNFSF13 (see all 6)

	Regulation of mRNA Stability by Proteins that Bind AU-rich Elements
	Metabolism of RNA
	Metabolism of mRNA
	Export of HuR:mRNA Complex from the Nucleus to the Cytoplasm
	Gene Expression

3 Kegg Pathways (Kegg details for TNFSF13):

	Cytokine-cytokine receptor interaction
	Intestinal immune network for IgA production
	Rheumatoid arthritis

TNFSF13 for pathways About GeneDecksing

Interactions:

SABiosciences Gene Network Central^TM Interacting Genes and Proteins Network for TNFSF13

STRING Interaction Network Preview (showing 5 interactants - click image to see 15)

5/16 Interacting proteins for TNFSF13 (O75888³ ENSP00000343505⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 16)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
TNFRSF13B	O14836³, ENSP00000261652⁴	I2D: score=3 STRING: ENSP00000261652
FAS	P25445³, ENSP00000347979⁴	I2D: score=2 STRING: ENSP00000347979
TNFRSF11B	O00300³, ENSP00000297350⁴	I2D: score=2 STRING: ENSP00000297350
TNFRSF14	Q92956³, ENSP00000347948⁴	I2D: score=2 STRING: ENSP00000347948
FURIN	P09958³, ENSP00000268171⁴	I2D: score=1 STRING: ENSP00000268171

About this table

Gene Ontology (GO): 5/11 biological process terms (GO ID links to tree view) (see all 11): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0002426	immunoglobulin production in mucosal tissue	IEA	--
GO:0002636	positive regulation of germinal center formation	IEA	--
GO:0006955	immune response	--	--
GO:0007165	signal transduction	TAS	9743536
GO:0008284	positive regulation of cell proliferation	IEA	--

TNFSF13 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

TNFSF13 for compounds About GeneDecksing

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for TNFSF13
3 Novoseek chemical compound relationships for TNFSF13 gene About this table

Compound	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
bcma	97.6	62	14764606 (6), 16960154 (4), 17968879 (4), 15697217 (3) (see all 33)
blys	93.8	81	16239971 (6), 12370363 (5), 12687540 (5), 12351410 (4) (see all 22)
monopril	88	5	19997650 (2), 17021878 (1), 16094704 (1)

Search CenterWatch for drugs/clinical trials and news about TNFSF13 / TNF13

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for TNFSF13 gene (6 alternative transcripts):

NM_001198622.1 NM_001198623.1 NM_001198624.1 NM_003808.3 NM_172087.2 NM_172088.2

Unigene Cluster for TNFSF13:

Tumor necrosis factor (ligand) superfamily, member 13

Hs.54673 [show with all ESTs]

Unigene Representative Sequence: NM_003808

8 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000483039 ENST00000396542 ENST00000438470 ENST00000436057 ENST00000349228(uc002ghj.2 uc002ghk.2 uc002ghl.2 uc010vua.1 uc010cmk.2)

ENST00000338784(uc021tpb.1) ENST00000396545 ENST00000380535

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Additional cDNA sequence:

AF030099.1 AF046888.1 AF055872.1 AF114011.1 AF114012.1 AF114013.1 AF136294.1 AF184972.1

AK090698.1 AK225556.1 AK301221.1 AK314518.1 AY081050.1 AY358870.1 AY358880.1 AY377858.1

BC008042.2 BC104420.1 BT019561.1 BT019562.1 CR542040.1 CR542073.1 DQ149579.1 EF211088.1

NR_037146.1 NR_073490.2

13 DOTS entries:

DT.443031 DT.91764994 DT.100754772 DT.210127 DT.97846269 DT.97846267 DT.100817918 DT.91765000

DT.97773298 DT.100817915 DT.95258824 DT.95376400 DT.120916384

24/342 AceView cDNA sequences (see all 342):

BF222608 AA364051 AI202121 AW301028 CB528323 AI244659 BC008042 CA396679

BE858822 AI720462 AI339802 NM_172087 BF439993 BI966060 AW129324 AI310092

BG272792 AK090698 CA866073 BF476443 AI298067 AF136294 BM691427 BU951915

GeneLoc Exon Structure

5/13 Alternative Splicing Database (ASD) splice patterns (SP) for TNFSF13 (see all 13) About this scheme

ExUns:	1	^	2	^	3	^	4	^	5	^	6	^	7	^	8	^	9a	·	9b	·	9c	·	9d	^	10a	·	10b	·	10c	^	11a	·	11b	·	11c	·	11d	^	12	^	13	^	14a	·	14b	^	15a	·	15b	·	15c	^
SP1:					-								-				-		-		-		-		-		-		-		-		-		-		-
SP2:					-
SP3:
SP4:					-								-
SP5:					-								-

ExUns:	16a	·	16b	^	17a	·	17b	·	17c	·	17d
SP1:
SP2:
SP3:			-
SP4:
SP5:

ECgene alternative splicing isoforms for TNFSF13

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

TNFSF13 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CCACACCTCT

About this image

TNFSF13 expression in embryonic tissues and stem cells
Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

1 LifeMap In Vivo Development Anatomical Compartment/Cell

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Eye

Outer Nuclear Layer

Mature Rod Cells

Photoreceptors, Retina

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

See TNFSF13 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for TNFSF13

SOURCE GeneReport for Unigene cluster: Hs.54673

UniProtKB/Swiss-Prot: TNF13_HUMAN, O75888

Tissue specificity: Expressed at high levels in transformed cell lines, cancers of colon, thyroid, lymphoid tissues and

specifically expressed in monocytes and macrophages

SABiosciences Expression via Pathway-Focused PCR Arrays including TNFSF13:

Inflammatory Cytokines & Receptors in human mouse rat

TNF Ligands & Receptors in human mouse rat

Common Cytokines in human mouse rat

Inflammatory Response & Autoimmunity 384HT in human mouse rat

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for TNFSF13 gene from 1/8 species (see all 8) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
zebrafish (Danio rerio)	Actinopterygii	tnfsf13¹	tumor necrosis factor (ligand) superfamily, member more	51.75(n) 41.45(a)		100149404 NM_001168464.1 NP_001161936.1

ENSEMBL Gene Tree for TNFSF13 (if available)
TreeFam Gene Tree for TNFSF13 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
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Paralogs for TNFSF13 gene

TNFSF12-TNFSF13² TNFSF13B² TNFSF12²

1 SIMAP similar gene for TNFSF13 using alignment to 9 protein entries: TNF13_HUMAN (see all proteins):

TNFSF13B

TNFSF13 for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
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SNP ID	Valid	Clinical significance	Chr 17 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs3803797^1,2	H	--	7354500(+)	`GTGAGT/CTGGGG`	6	--	us2k¹		4		NS EA	418
rs113147008^1,2	C,F	--	7354928(+)	`CCTCTG/ACCCCA`	6	--	us2k¹		1		NA	120
rs28362665^1,2	C,F	--	7354943(+)	`CAGCCG/ACTCTT`	6	--	us2k¹ ese³		6		NA WA EA	364
rs75016989^1,2	F	--	7355091(+)	`CTGACC/GCTTTG`	6	--	us2k¹		1		WA	118
rs112438437^1,2	C	--	7355218(+)	`GGACCC/TGGCGG`	6	--	us2k¹		1		WA	2
rs28362666^1,2	C,H	--	7355299(+)	`CTCCCT/CTGAGA`	6	--	us2k¹ ese³ trp³		5		MN EA NS NA	1428
rs55725943^1,2	C,F	--	7355452(+)	`TGAAGG/CGGGGC`	6	--	us2k¹		1		NA	120
rs78744936^1,2		--	7355528(+)	`CTCCAG/ACCCCC`	6	--	us2k¹		3		NA WA	240
rs7503669^1,2	C,H	--	7357644(+)	`GGATGC/TTGGAG`	13	A V	mis¹ us2k¹ ese³		4		NS EA	406
rs61760045^1,2	C	--	7357950(+)	`ATGCCC/TTCCCA`	13	P	syn¹ us2k¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for TNFSF13 (7461609 - 7464925 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for TNFSF13: --
Human Gene Mutation Database (HGMD): TNFSF13

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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TNFSF13 for disorders           About GeneDecksing

OMIM gene information: 604472    OMIM disorders: --

20/54 diseases for TNFSF13 (see all 54):    About MalaCards

common variable immunodeficiency waldenstrom macroglobulinemia brain glioblastoma multiforme sle susceptibility

alopecia areata myasthenia gravis lupus erythematosus b-cell lymphomas

systemic lupus erythematosus myoclonus malt lymphoma lymphocytic leukemia

macroglobulinemia atopic dermatitis rheumatoid arthritis chronic lymphocytic leukemia

acute lymphocytic leukemia lupus nephritis acute myeloid leukemia myasthenia

10/12 Novoseek disease relationships for TNFSF13 gene (see all 12) About this table

Disease	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
autoimmune diseases	61.5	7	14764606 (1), 19339060 (1), 19758161 (1), 16239971 (1) (see all 7)
autoimmunity	60.3	4	19760066 (2), 18295728 (1)
necrosis	59.7	35	11550092 (3), 10956646 (2), 14504101 (1), 16547002 (1) (see all 31)
lupus erythematosus systemic	43.5	11	18718031 (2), 17307753 (2), 19565488 (2), 17092341 (2) (see all 7)
leukemia lymphocytic chronic	42.7	9	17768131 (2), 19291294 (1), 17026820 (1), 19452288 (1)
tumors	36.7	61	11550092 (4), 19291294 (4), 15846369 (4), 9743536 (3) (see all 32)
hodgkin disease	25.6	7	17315017 (1), 16960154 (1), 19291294 (1), 17026820 (1)
hematologic malignancies	23	1	19291294 (1)
rheumatoid arthritis	22.8	7	17092341 (2), 17307753 (1), 17968879 (1), 20116334 (1) (see all 5)
lymphoma	15.7	4	17026820 (1), 19321861 (1), 19452288 (1)

Genetic Association Database (GAD): TNFSF13
Human Genome Epidemiology (HuGE) Navigator: TNFSF13 (9 documents)

Export disorders for TNFSF13 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
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PubMed articles for TNFSF13 gene, integrated from 9 sources (see all 184):
(articles sorted by number of sources associating them with TNFSF13)

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APRIL, a new ligand of the tumor necrosis factor family, stimulates tumor cell growth. (PubMed id 9743536)^{1, 2, 3, 9} Hahne M.... Tschopp J. (1998)
A novel polymorphism of the human APRIL gene is associated with systemic lupus erythematosus. (PubMed id 12730512)^{1, 4, 9} Koyama T....Horiuchi T. (2003)
APRIL/TRDL-1, a tumor necrosis factor-like ligand, stimulates cell death. (PubMed id 10706119)^{1, 2, 9} Kelly K.A.... Jones D.A. (2000)
An endogenous hybrid mRNA encodes TWE-PRIL, a functional cell surface TWEAK-APRIL fusion protein. (PubMed id 12411489)^{1, 2, 9} Pradet-Balade B....Hahne M. (2002)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{1, 2} Ota T.... Sugano S. (2004)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)^{1, 2} Clark H.F.... Gray A.M. (2003)
Biologically active APRIL is secreted following intracellular processing in the Golgi apparatus by furin convertase. (PubMed id 11571266)^{1, 2} Lopez-Fraga M.... Hahne M. (2001)
APRIL and TALL-I and receptors BCMA and TACI: system for regulating humoral immunity. (PubMed id 10973284)^{1, 2} Yu G.... Theill L.E. (2000)
TALL-1 is a novel member of the TNF family that is down-regulated by mitogens. (PubMed id 10331498)^{1, 2} Shu H.-B.... Johnson H. (1999)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Disorders
Free Text

Query String		PubMed OMIM NCBI Bookshelf
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(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 8741	HGNC: 11928	AceView: TNFSF13	Ensembl:ENSG00000161955	euGenes: HUgn8741
ECgene: TNFSF13	Kegg: 8741	H-InvDB: TNFSF13

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Name	Description
PharmGKB entry for TNFSF13	Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for TNFSF13	Genetics and Cytogenetics in Oncology and Haematology

Intellectual Property for TNFSF13 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for TNFSF13 gene:
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TNFSF13 Gene

tumor necrosis factor (ligand) superfamily, member 13

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TNFSF13 Gene

tumor necrosis factor (ligand) superfamily, member 13

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