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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

TNFSF12-TNFSF13 Gene

protein-coding   GIFtS: 35
GCID: GC17P007453

TNFSF12-TNFSF13 readthrough
 Explore 3 diseases affiliated with
TNFSF12-TNFSF13 via
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Biological research products
for TNFSF12-TNFSF13    

Aliases
for TNFSF12-TNFSF13 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
TNFSF12-TNFSF13 Readthrough1 2
TWE-PRIL1 2
TNFSF12-TNFSF13 Protein2
Tumor Necrosis Factor (Ligand) Superfamily, Member 12-Member 132

External Ids:    HGNC: 335371   Entrez Gene: 4079772   Ensembl: ENSG000002488717   UniProtKB: Q6U6I74   

Export aliases for TNFSF12-TNFSF13 gene to outside databases

Previous GC identifers: GC17U900475 GC17P007393 GC17P007347


Summaries
for TNFSF12-TNFSF13 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
Entrez Gene summary for TNFSF12-TNFSF13:
This gene encodes a member of the tumor necrosis factor superfamily. It encodes a hybrid protein composed of the
cytoplasmic and transmembrane domains of family member 12 fused to the C-terminal domain of family member 13. The
hybrid protein is membrane anchored and presents the receptor-binding domain of family member 13 at the cell surface.
It stimulates cycling in T- and B-lymphoma cell lines. (provided by RefSeq, Jul 2008)

Gene Wiki entry for TNFSF12-TNFSF13


Genomic Views
for TNFSF12-TNFSF13 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
 Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the TNFSF12-TNFSF13 gene promoter:
         AP-1   ATF-2   MyoD   NF-kappaB   FOXO1a   c-Jun   NF-kappaB1   FOXO1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): TNFSF12-TNFSF13 promoter sequence
   Search SABiosciences Chromatin IP Primers for TNFSF12-TNFSF13

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TNFSF12-TNFSF13


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17p13.1   Ensembl cytogenetic band:  17p13.1   HGNC cytogenetic band: 17p13.1

TNFSF12-TNFSF13 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TNFSF12-TNFSF13 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17P007453:  view genomic region     (about GC identifiers)

Start:
 7,452,416 bp from pter      End:
 7,464,925 bp from pter
Size:
 12,510 bases      Orientation:
 plus strand

Proteins
for TNFSF12-TNFSF13 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/TrEMBL: Q6U6I7 (See protein sequence)
Recommended Name: APRIL  
Size: 146 amino acids; 16351 Da

TNFSF12-TNFSF13 Protein expression data from MOPED and PaxDb:    About this image 

Estimated protein expression log10 (pmol).

REFSEQ proteins: NP_742086.1  
ENSEMBL proteins: 
 ENSP00000293826  

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Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005615extracellular space ----
GO:0016020membrane ----


TNFSF12-TNFSF13 for ontologies           About GeneDecksing



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Protein Domains /
Families
for TNFSF12-TNFSF13 gene

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
TNFSF12-TNFSF13 for domains           About GeneDecksing

3 InterPro domains/families:
 IPR006052 TNF
 IPR008983 Tumour_necrosis_fac-like_dom
 IPR021184 TNF_CS

Graphical View of Domain Structure for InterPro Entry Q6U6I7

ProtoNet protein and cluster: Q6U6I7

1 Blocks protein family: IPB006052 Tumor Necrosis Factor


Function
for TNFSF12-TNFSF13 gene

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section
miRNA
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SwitchGear 3'UTR luciferase reporter plasmid: TNFSF12-TNFSF13 3' UTR sequence
Inhib. RNA
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In Situ Assay
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Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005125cytokine activity ----
GO:0005164tumor necrosis factor receptor binding ----


TNFSF12-TNFSF13 for ontologies           About GeneDecksing



Pathways & Interactions
for TNFSF12-TNFSF13 gene

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Unified GeneCards pathways  About this table 
See pathways by source

Super-pathwaycontained gene-specific pathways
1TWEAK Pathway
TWEAK Signaling Pathway0.31


1 BioSystems Pathway for TNFSF12-TNFSF13 
    TWEAK Signaling Pathway


Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TNFSF12-TNFSF13

STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

3 Interacting proteins for TNFSF12-TNFSF13 (ENSP000002938264) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
AGGF1ENSP000003161094STRING: ENSP00000316109
TNFRSF25ENSP000003670134STRING: ENSP00000367013
TNFRSF12AENSP000003267374STRING: ENSP00000326737
About this table

Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006955immune response ----


TNFSF12-TNFSF13 for ontologies           About GeneDecksing



Drugs & Compounds
for TNFSF12-TNFSF13 gene

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
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Browse Tocris compounds for TNFSF12-TNFSF13
Search CenterWatch for drugs/clinical trials and news about TNFSF12-TNFSF13 

Transcripts
for TNFSF12-TNFSF13 gene

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section
REFSEQ mRNAs for TNFSF12-TNFSF13 gene: 
NM_172089.3  

1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000293826(uc002ghi.1)

miRNA
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hsa-miR-516b hsa-miR-26b* hsa-miR-1270 hsa-miR-3158-3p hsa-miR-199a-5p hsa-miR-620 hsa-miR-199b-5p hsa-miR-145
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Inhib. RNA
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Clone
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Primer
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24/342 AceView cDNA sequences (see all 342):

AA361896 CD370028 AI202121 AI250901 BU630692 NM_172089 AW592336 AI954750 
AA512971 CF126932 AI422796 CD366782 AI298067 NM_172087 BE858822 BF196031 
NM_153012 BI758093 AI670062 BC008042 BF439993 NM_172088 CA413067 BG272792 

GeneLoc Exon Structure


Expression
for TNFSF12-TNFSF13 gene

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

TNFSF12-TNFSF13 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --

Microarray
RNAseq (Illumina Body Map)
(100×FPKM)½
SAGE (Serial Analysis of Gene Expression)
About this image
See TNFSF12-TNFSF13 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for TNFSF12-TNFSF13
    SABiosciences Custom PCR Arrays for TNFSF12-TNFSF13
Primer
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In Situ
Assay Products: 
 		Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TNFSF12-TNFSF13

Orthologs
for TNFSF12-TNFSF13 gene

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section
This gene was present in the common ancestor of chordates.

Orthologs for TNFSF12-TNFSF13 gene from 1/5 species (see all 5)    About this table
Organism Taxonomic
classification		 Gene Description Human
Similarity		 Orthology
Type		 Details
zebrafish
(Danio rerio)		 Actinopterygii tnfsf136
 tumor necrosis factor (ligand) superfamily, member...
 33(a)
 1 → many
 5(71366008-71376195)


ENSEMBL Gene Tree for TNFSF12-TNFSF13 (if available)
TreeFam Gene Tree for TNFSF12-TNFSF13 (if available) 

Paralogs
for TNFSF12-TNFSF13 gene

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for TNFSF12-TNFSF13 gene
TNFSF13B2  TNFSF122  TNFSF132  

TNFSF12-TNFSF13 for paralogs           About GeneDecksing



Genomic Variants
for TNFSF12-TNFSF13 gene

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
SABiosciences Cancer Mutation PCR Assays
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Disorders / Diseases
for TNFSF12-TNFSF13 gene

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
TNFSF12-TNFSF13 for disorders           About GeneDecksing

3 diseases for TNFSF12-TNFSF13:    About MalaCards
systemic lupus erythematosus    lupus erythematosus    multiple sclerosis

Human Genome Epidemiology (HuGE) Navigator: TNFSF12-TNFSF13 (3 documents)

Export disorders for TNFSF12-TNFSF13 gene to outside databases

Publications
for TNFSF12-TNFSF13 gene

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for TNFSF12-TNFSF13 gene, integrated from 9 sources (see all 18):
(articles sorted by number of sources associating them with TNFSF12-TNFSF13)		    Utopia: connect your pdf to the dynamic
world of online information

  1. An endogenous hybrid mRNA encodes TWE-PRIL, a functional cell surface TWEAK-APRIL fusion protein. (PubMed id 12411489)1, 3, 9 Pradet-Balade B....Hahne M. (2002)
  2. Role of APRIL (TNFSF13) polymorphisms in the susceptibility to systemic lupus erythematosus in Japanese. (PubMed id 17307753)1, 9 Kawasaki A....Tokunaga K. (2007)
  3. Association of common variants in TNFRSF13B, TNFSF13, and ANXA3 with serum levels of non-albumin protein and immunoglobulin isotypes i n Japanese. (PubMed id 22558069)1 Osman W....Nakamura Y. (2012)
  4. Genome-wide association study identifies TNFSF13 as a susceptibility gene for IgA in a South Chinese population in smokers. (PubMed id 22864923)1 Yang C....Zengnan M. (2012)
  5. A genome-wide association study in Han Chinese identif ies multiple susceptibility loci for IgA nephropathy. (PubMed id 22197929)1 Yu X.Q....Liu J.J. (2012)
  6. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PubMed id 20967262)1 Prakash T....Taylor T.D. (2010)
  7. Variation at the NFATC2 locus increases the risk of t hiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipr il and rosiglitazone Medication (DREAM) study. (PubMed id 20628086)1 Bailey S.D....Anand S. (2010)
  8. Gene-centric association signals for lipids and apoli poproteins identified via the HumanCVD BeadChip. (PubMed id 19913121)1 Talmud P.J.... . (2009)
  9. Interferon-beta increases BAFF levels in multiple sclerosis: implications for B cell autoimmunity. (PubMed id 18474519)1 Krumbholz M....Meinl E. (2008)
  10. BAFF, APRIL, TWE-PRIL: who's who? (PubMed id 18295728)1 Daridon C....Pers J.O. (2008)

External Searches for TNFSF12-TNFSF13 gene

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  
  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

Genome Databases showing TNFSF12-TNFSF13 gene

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 407977 HGNC: 33537 AceView: TNFSF13 Ensembl:ENSG00000248871 euGenes: HUgn407977
ECgene: TNFSF12-TNFSF13 H-InvDB: TNFSF12-TNFSF13

Other Databases showing TNFSF12-TNFSF13 gene

(According to HUGE)
About This Section
   --

Specialized Databases showing TNFSF12-TNFSF13 gene

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for TNFSF12-TNFSF13 Pharmacogenomics, SNPs, Pathways

Intellectual Property
for TNFSF12-TNFSF13 gene

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for TNFSF12-TNFSF13 gene:
Search GeneIP for patents involving TNFSF12-TNFSF13

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



Products
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About This Section

 
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