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Aliases & Descriptions for TNFSF10
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| | | Descriptions |
|---|
| Apo-2 ligand 2, 3 | | CD253 antigen 3 | | Protein TRAIL 3 | | TNF-related apoptosis inducing ligand TRAIL 2 | | TNF-related apoptosis-inducing ligand 3 | | tumor necrosis factor (ligand) family, member 10 2 | | tumor necrosis factor (ligand) superfamily, member 10 2 | tumor necrosis factor apoptosis-inducing ligand splice variant delta 2 |
|
| | Search outside databases for aliases for TNFSF10 genePrevious GC identifers: GC03M169274 GC03M173180 GC03M173625 GC03M173544 |
Summaries for TNFSF10(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for TNFSF10: The protein encoded by this gene is a cytokine that belongs to the tumor necrosis factor (TNF) ligand family. This protein preferentially induces apoptosis in transformed and tumor cells, but does not appear to kill normal cells although it is expressed at a significant level in most normal tissues. This protein binds to several members of TNF receptor superfamily including TNFRSF10A/TRAILR1, TNFRSF10B/TRAILR2, TNFRSF10C/TRAILR3, TNFRSF10D/TRAILR4, and possibly also to TNFRSF11B/OPG. The activity of this protein may be modulated by binding to the decoy receptors TNFRSF10C/TRAILR3, TNFRSF10D/TRAILR4, and TNFRSF11B/OPG that cannot induce apoptosis. The binding of this protein to its receptors has been shown to trigger the activation of MAPK8/JNK, caspase 8, and caspase 3. [provided by RefSeq] UniProtKB/Swiss-Prot: TNF10_HUMAN, P50591Function: Cytokine that binds to TNFRSF10A/TRAILR1, TNFRSF10B/TRAILR2, TNFRSF10C/TRAILR3, TNFRSF10D/TRAILR4 and possibly also to TNFRSF11B/OPG. Induces apoptosis. Its activity may be modulated by binding to the decoy receptors TNFRSF10C/TRAILR3, TNFRSF10D/TRAILR4 and TNFRSF11B/OPG that cannot induce apoptosisGene Wiki entry for TNFSF10 (TRAIL) |
Genomic Location for TNFSF10
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the TNFSF10 gene 
Entrez Gene cytogenetic band: 3q26 Ensembl cytogenetic band: 3q26.31 HGNC cytogenetic band: 3q26TNFSF10 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure GeneLoc location for GC03M173706:
(about GC identifiers)
Start:
|
173,706,158 bp from pter |
End:
|
173,723,963 bp from pter |
Size:
|
17,806 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000003.10 NT_005612.15
| Proteins for TNFSF10
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: TNF10_HUMAN, P50591 (See
protein sequence)Recommended Name: Tumor necrosis factor ligand superfamily member 10 Size: 281 amino acids; 32509 Da
Cofactor: Binds 1 zinc ion per trimer
Subunit: Homotrimer
Subcellular location: Membrane; Single-pass type II membrane protein (Potential)
PDB structures from and Proteopedia :1D0G (3D)
 1D2Q (3D)
 1D4V (3D)
 1DG6 (3D)
 1DU3 (3D)
 REFSEQ proteins: NP_003801.1
ENSEMBL proteins: ENSP00000372198 ENSP00000241261
Human Recombinant Proteins  | Invitrogen human recombinant proteins for TNFSF10 |  | Millipore Purified and/or Recombinant TNFSF10 Protein |  | Sigma-Aldrich Proteins for TNFSF10  |  | R&D Systems Recombinant & Natural Proteins for TNFSF10 (TRAIL/TNFSF10) |  | Enzo Life Sciences proteins for TNFSF10 |  | Recombinant Proteins from Abcam (TRAIL) |  | Human Recombinant Proteins from Abnova (TNFSF10) | Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for TNFSF10:  | Invitrogen Antibodies for TNFSF10 |  | Millipore Mono- and Polyclonal Antibodies for the study of TNFSF10 |  | Sigma-Aldrich Antibody Arrays and Antibodies for TNFSF10 |  | R&D Systems Antibodies for TNFSF10 (TRAIL/TNFSF10) |  | Cell Signaling Technology (CST) Antibodies for TNFSF10  (TRAIL) |  | Antibodies from Abcam (TRAIL), each with their AbpromiseSM |  | Monoclonal and Polyclonal Antibodies from Abnova (TNFSF10) |  | Novus Biologicals Antibodies for TNFSF10 |
Assays for TNFSF10: | Protein
Domains/ Families for TNFSF10(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P50591
ProtoNet protein and cluster: P50591 1 Blocks protein family: IPB006052 Tumor Necrosis Factor
UniProtKB/Swiss-Prot: TNF10_HUMAN, P50591Similarity: Belongs to the tumor necrosis factor family | Gene Function for TNFSF10
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_003810
Applied Biosystems Silencer® siRNAs for TNFSF10
Sigma-Aldrich siRNA and siRNA Panels for TNFSF10  Sigma-Aldrich shRNA Panels and shRNA for TNFSF10  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003810                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003810                                  untagged cDNA clones in CMV expression vector (see all 2): BC032722 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003810
UniProtKB/Swiss-Prot: TNF10_HUMAN, P50591Function: Cytokine that binds to TNFRSF10A/TRAILR1, TNFRSF10B/TRAILR2, TNFRSF10C/TRAILR3, TNFRSF10D/TRAILR4 and possibly also to TNFRSF11B/OPG. Induces apoptosis. Its activity may be modulated by binding to the decoy receptors TNFRSF10C/TRAILR3, TNFRSF10D/TRAILR4 and TNFRSF11B/OPG that cannot induce apoptosisGenatlas biochemistry entry for TNFSF10:tumor necrosis factor (ligand) superfamily,member 10,TNF-related apoptosis inducing ligand (TRAIL),predominantly expressed in spleen,lung,prostate4 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Tnfsf10):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for TNFSF10
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
1 Sigma-Aldrich "Your Favorite Gene" Pathway for TNFSF10 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for TNFSF10 
5/113 Interacting proteins for TNFSF10 (ENSP000003721983 P505912) via UniProtKB, MINT, and/or STRING (see all 113
)About this table
5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7
): About this table
|
Drugs & Compounds for TNFSF10(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for TNFSF10 10/53 Novoseek chemical compound relationships for TNFSF10 gene (see all 53
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| tri (d) |
82.90 |
15 |
10811986 (3), 9563466 (2), 10690508 (2), 10933923 (1) (see all 7) |
| noxa |
63.05 |
4 |
17569614 (1), 19050264 (1), 16888645 (1), 16026644 (1) |
| sp 600125 |
62.77 |
5 |
17698840 (2), 15286701 (1), 16442178 (1) |
| ifn-alpha |
53.18 |
57 |
17617740 (6), 17432976 (6), 16736946 (4), 15585621 (3) (see all 10) |
| 8-chloroadenosine |
52.67 |
4 |
15201983 (2), 16438865 (1), 18097593 (1) |
| perifosine |
50.43 |
21 |
19010914 (7), 18698026 (3), 17604333 (1) |
| phosphatidylinositol |
41.52 |
24 |
12140294 (7), 10502402 (2), 15684417 (2), 11350953 (1) (see all 14) |
| dutp |
40.50 |
3 |
12198711 (1), 19192720 (1) |
| epoxomicin |
40.08 |
5 |
16998592 (1), 18341587 (1), 15930365 (1) |
| ceramide |
38.86 |
41 |
15197616 (6), 17610065 (5), 16170023 (5), 16636669 (4) (see all 10) |
About this table
|
Transcripts for TNFSF10(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_003810
Sigma-Aldrich siRNA and siRNA Panels for TNFSF10  Sigma-Aldrich shRNA Panels and shRNA for TNFSF10  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_003810 REFSEQ mRNAs for TNFSF10 gene: NM_003810.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003810               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003810                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003810                                  untagged cDNA clones in CMV expression vector (see all 2): BC032722  Additional cDNA sequence: AK296085.1 AK309200.1 AK312742.1 AY312579.1 BC009795.1 BC020220.1 BC032722.1 BT019564.1 CR456895.1 CR594331.1 CR598109.1 DQ848564.1 EU183231.1 U37518.1 U57059.1 17 DOTS entries: DT.449374 DT.100822130 DT.100769434 DT.40117324 DT.100822135 DT.100658129 DT.95363578 DT.100025860 DT.120854655 DT.120854676 DT.95278015 DT.97819079 DT.100822126 DT.120854632 DT.120854642 DT.95278008 DT.95361049 24/277 AceView cDNA sequences (see all 277
):AU139518 AI656729 AA176671 AA297900 NM_003810 BM765007 U57059 BX399299 CB127043 AA298876 AU137748 CR598109 AW303882 AA176836 BX382031 AW474434 AA910517 AU136348 AI638788 AA164632 CB215494 BX378852 AI660244 H38776
highest scoring ESTs for TNFSF10:U37518 AA263133 AA477173 AA494493 AA877776 AI657160 AI660244 AI769552 AU100152 AU121602 Unigene Cluster for TNFSF10: Tumor necrosis factor (ligand) superfamily, member 10 Hs.478275 [show with all ESTs]Unigene Representative Sequence: NM_003810
GeneLoc Exon Structure
5/8 Alternative Splicing Database (ASD) splice patterns (SP) for TNFSF10 (see all 8
)
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | · | 1e | ^ | 2a | · | 2b | ^ | 3a | · | 3b | · | 3c | ^ | 4 | ^ | 5a | · | 5b | ^ | 6a | · | 6b | · | 6c | · | 6d | |
| SP1: | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | - |   | - |   | |   | - |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for TNFSF10
2 Ensembl transcripts including schematic representations: ENST00000382750
ENST00000241261
|
Expression for TNFSF10
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| TNFSF10 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for TNFSF10
1 / 2 / 3 7 probe-sets matching TNFSF10 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CCACTACACT
SOURCE GeneReport for Unigene cluster: Hs.478275
Expression variation in blood from EXPOLDB for TNFSF10 UniProtKB/Swiss-Prot: TNF10_HUMAN, P50591Tissue specificity: Widespread; most predominant in spleen, lung and prostate |
Orthologs for TNFSF10
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for TNFSF10 gene from 5/6 species (see all 6
)
About this table Species with no ortholog for TNFSF10
ENSEMBL Gene Tree for TNFSF10 | Paralogs for TNFSF10(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for TNFSF10 gene
- TNFSF112 ENSG000001885252
|
SNPs/Variants for TNFSF10(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for TNFSF10 (up to first 250kb)
|
Disorders & Mutations for TNFSF10
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 603598
10/93 Novoseek disease relationships for TNFSF10 gene (see all 93
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| necrosis |
90.47 |
1208 |
14555528 (3), 15808757 (3), 10438545 (2), 10947965 (2) (see all 99) |
| tumors |
83.24 |
2001 |
12384541 (6), 17437073 (6), 12391182 (5), 10626806 (5) (see all 99) |
| cancer |
75.08 |
741 |
15158769 (5), 17143496 (5), 15550937 (5), 15653686 (4) (see all 99) |
| malignant glioma |
62.66 |
35 |
14655759 (3), 15110189 (2), 18634847 (2), 16361820 (2) (see all 20) |
| colon cancer |
62.47 |
87 |
12168112 (3), 15993848 (3), 11309649 (3), 16153452 (3) (see all 52) |
| glioma |
58.42 |
120 |
18172319 (5), 11593384 (5), 18594532 (5), 17545549 (5) (see all 47) |
| prostate cancer |
56.31 |
120 |
16891474 (4), 11857034 (4), 18404675 (3), 11461904 (3) (see all 67) |
| hepatocellular carcinoma |
53.78 |
43 |
16792868 (4), 17244456 (2), 12750253 (2), 12795833 (2) (see all 33) |
| glioblastoma |
51.60 |
38 |
16622457 (4), 14596484 (3), 16357155 (3), 15504253 (3) (see all 18) |
| colon carcinoma |
49.67 |
25 |
17143800 (3), 18097875 (3), 12941843 (2), 17431792 (1) (see all 18) |
About this table
Genetic Association Database: TNFSF10 Human Genome Epidemiology Navigator: TNFSF10 (3 documents)
|
Medical News for TNFSF10(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for TNFSF10 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/1564 PubMed articles for TNFSF10 gene (see all 1564
):- Identification and characterization of a new member of the TNF family that induces apoptosis. (PubMed id 8777713)1, 2, 3, 4 Wiley S.R....Goodwin R.G. (1995)
- Induction of apoptosis by Apo-2 ligand, a new member of the tumor necrosis factor cytokine family. (PubMed id 8663110)2, 3, 4 Pitti R.M....Ashkenazi A. (1996)
- TNF-related apoptosis inducing ligand (TRAIL) gene polymorphism in Japanese patients with multiple sclerosis. (PubMed id 16040132)3, 6 Kikuchi S....Sasaki H. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Three polymorphisms in the 3' UTR of the TRAIL (TNF-related apoptosis-inducing ligand) gene. (PubMed id 11781716)3, 6 Gray H.L....Ober C. (2001)
- Triggering cell death: the crystal structure of Apo2L/TRAIL in a complex with death receptor 5. (PubMed id 10549288)3, 4 Hymowitz S.G.... de Vos A.M. (1999)
- Structure of the TRAIL-DR5 complex reveals mechanisms conferring specificity in apoptotic initiation. (PubMed id 10542098)3, 4 Mongkolsapaya J.... Screaton G.R. (1999)
- 2.8 A resolution crystal structure of human TRAIL, a cytokine with selective antitumor activity. (PubMed id 10485660)3, 4 Cha S.-S.... Oh B.-H. (1999)
- Surface TRAIL decoy receptor-4 expression is correlated with TRAIL resistance in MCF7 breast cancer cells. (PubMed id 15916713)1, 3 Sanlioglu A.D....Sanlioglu S. (2005)
- Expression of TNF-related apoptosis-inducing ligand (TRAIL) in megakaryocytes and platelets. (PubMed id 15539085)1, 3 Crist S.A....Ratliff T.L. (2004)
|
Search for TNFSF10
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing TNFSF10
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing TNFSF10
(According to HUGE)
About This Section
| -- |
Specialized Databases showing TNFSF10(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for TNFSF10(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for TNFSF10:

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| Antibodies & Assays for TNFSF10  (TRAIL) |
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Incremental update: 13 Oct 2009
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