TNFRSF1B Gene
protein-coding GIFtS : 71
GCID: GC01 P012161
tumor necrosis factor receptor superfamily, member 1B (Previous symbol: TNFR2 )
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Aliasesfor TNFRSF1B gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Tumor Necrosis Factor Receptor Superfamily, Member 1B 1 2 P80 TNF-Alpha Receptor2 3 TNFBR1 2 3 5 TBPII2 TNFR21 2 3 5 TNFR1B2 P751 P75 TNF Receptor2 CD120b1 2 P75TNFR1 TNF-R-II1 2 Soluble TNFR1B Variant 12 TNF-R751 2 Tumor Necrosis Factor Beta Receptor2 TNFR801 2 Tumor Necrosis Factor Binding Protein 22 Tumor Necrosis Factor Receptor 22 3 Tumor Necrosis Factor Receptor Superfamily Member 1B2 Tumor Necrosis Factor Receptor Type II2 3 Etanercept3 TNF-R22 3 TNFR-II3 TNF-RII2 3 CD120b Antigen3
Export aliases for TNFRSF1B gene to outside databases Previous GC identifers: GC01P012291 GC01P012071 GC01P011836 GC01P011936 GC01P011380
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Summariesfor TNFRSF1B gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for TNFRSF1B : The protein encoded by this gene is a member of the TNF-receptor superfamily. This protein and TNF-receptor 1 form a heterocomplex that mediates the recruitment of two anti-apoptotic proteins, c-IAP1 and c-IAP2, which possess E3 ubiquitin ligase activity. The function of IAPs in TNF-receptor signalling is unknown, however, c-IAP1 is thought to potentiate TNF-induced apoptosis by the ubiquitination and degradation of TNF-receptor-associated factor 2, which mediates anti-apoptotic signals. Knockout studies in mice also suggest a role of this protein in protecting neurons from apoptosis by stimulating antioxidative pathways. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: TNR1B_HUMAN, P20333 Function : Receptor with high affinity for TNFSF2/TNF-alpha and approximately 5-fold lower affinity for homotrimericTNFSF1/lymphotoxin-alpha. The TRAF1/TRAF2 complex recruits the apoptotic suppressors BIRC2 and BIRC3 to TNFRSF1B/TNFR2. This receptor mediates most of the metabolic effects of TNF-alpha. Isoform 2 blocks TNF-alpha-induced apoptosis, which suggests that it regulates TNF-alpha function by antagonizing its biological activity Gene Wiki entry for TNFRSF1B
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Genomic Viewsfor TNFRSF1B gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000001.10 NC_018912.1 NT_021937.19 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the TNFRSF1B gene promoter: AML1a STAT3 Other transcription factors Search SABiosciences Chromatin IP Primers for TNFRSF1B Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat TNFRSF1B
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 1p36.22 Ensembl cytogenetic band: 1p36.22 HGNC cytogenetic band: 1p36.22 TNFRSF1B Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P012161: view genomic region
(about GC identifiers )
Start:
12,227,060 bp from pter
End:
12,269,285 bp from pter
Size:
42,226 bases
Orientation:
plus strand
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Proteinsfor TNFRSF1B gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: TNR1B_HUMAN, P20333 (See
protein sequence )Recommended Name: Tumor necrosis factor receptor superfamily member 1B precursor Size : 461 amino acids; 48291 Da
Subunit : Binds to TRAF2. Interacts with BMX
Subcellular location : Isoform 1: Cell membrane; Single-pass type I membrane protein
Subcellular location : Isoform 2: Secreted
Subcellular location : Tumor necrosis factor-binding protein 2: Secreted
2 PDB 3D structures from and Proteopedia for TNFRSF1B :1CA9 (3D)
  3ALQ (3D)
 
Secondary accessions : B1AJZ3 Q16042 Q6YI29 Q9UIH1Alternative splicing : 2 isoforms : P20333-1 P20333-2 Explore the universe of human proteins at neXtProt for TNFRSF1B: NX_P20333 Post-translational modifications:
Phosphorylated; mainly on serine residues and with a very low level on threonine residues1
A soluble form (tumor necrosis factor binding protein 2) is produced from the membrane form by proteolytic processing1
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_P20333 TNFRSF1B Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_001057.1 ENSEMBL proteins: ENSP00000365435 ENSP00000440425 Human Recombinant Protein Products: Gene Ontology (GO): 5/9 cellular component terms (GO ID links to tree view) (see all 9 ): About this table
TNFRSF1B for ontologies About GeneDecksing TNFRSF1B Antibody Products: Assay Products for TNFRSF1B:
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Protein
Domains / Familiesfor TNFRSF1B gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
TNFRSF1B for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P20333 ProtoNet protein and cluster: P20333
1 Blocks protein family : IPB001368 TNFR/CD27/30/40/95 cysteine-rich region UniProtKB/Swiss-Prot: TNR1B_HUMAN, P20333 Similarity : Contains 4 TNFR-Cys repeats
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Functionfor TNFRSF1B gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: TNR1B_HUMAN, P20333 Function : Receptor with high affinity for TNFSF2/TNF-alpha and approximately 5-fold lower affinity for homotrimericTNFSF1/lymphotoxin-alpha. The TRAF1/TRAF2 complex recruits the apoptotic suppressors BIRC2 and BIRC3 to TNFRSF1B/TNFR2. This receptor mediates most of the metabolic effects of TNF-alpha. Isoform 2 blocks TNF-alpha-induced apoptosis, which suggests that it regulates TNF-alpha function by antagonizing its biological activity
Genatlas biochemistry entry for TNFRSF1B : tumor necrosis factor receptor superfamily,member 1B,deleted in neuroblastoma,associated with susceptibility to systemic lupus erythematosus Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TNFRSF1B (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TNFRSF1BOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: TNFRSF1B (NM_001066 ) Sino Biological Human cDNA Clone for TNFRSF1B DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TNFRSF1B Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TNFRSF1B
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TNFRSF1B
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view) : About this table
TNFRSF1B for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for TNFRSF1B :Animal Models: Mouse knock-outs for TNFRSF1B: Tnfrsf1b tm1Imx Tnfrsf1b tm1Mwm 15/19 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Tnfrsf1b) (see all 19 ):
TNFRSF1B for phenotypes About GeneDecksing
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Pathways & Interactionsfor TNFRSF1B gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways  - 5/28 super-pathways (see all 28 ) About this table See pathways by source Super-pathway contained gene-specific pathways 1 Apoptosis and survival_Anti-apoptotic TNFs/NF-kB/Bcl-2 pathway 2 TGF-Beta Pathway 3 PEDF Induced Signaling 4 Akt Signaling 5 TRAF Pathway
Pathway sources See GeneCards unified pathways Show all pathways 3 EMD Millipore Pathways for TNFRSF1B 3 R&D Systems Pathways for TNFRSF1B 5/28 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for TNFRSF1B (see all 28 )2
Cell Signaling Technology (CST) Pathways for TNFRSF1B 4 GeneGo (Thomson Reuters) Pathways for TNFRSF1B 5/6 BioSystems Pathways for TNFRSF1B (see all 6 ) 3
Kegg Pathways (Kegg details for TNFRSF1B) :
TNFRSF1B for pathways About GeneDecksing Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for TNFRSF1B STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)5/135 Interacting proteins for TNFRSF1B (P20333 2 , 3 ENSP00000365435 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 135 )About this table Gene Ontology (GO): 5/11 biological process terms (GO ID links to tree view) (see all 11 ): About this table
TNFRSF1B for ontologies About GeneDecksing
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Drugs & Compoundsfor TNFRSF1B gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
TNFRSF1B for compounds About GeneDecksing Browse Tocris compounds for TNFRSF1B UniProtKB/Swiss-Prot: TNR1B_HUMAN, P20333 Pharmaceutical : Available under the name Enbrel (Immunex and Wyeth-Ayerst). Used to treat moderate to severe rheumatoidarthritis (RA). Enbrel consist of the extracellular ligand-binding portion of TNFRSF1B linked to an immunoglobulin Fc chain. It binds to TNF-alpha and blocks its interactions with receptors 1 DrugBank Compound for TNFRSF1B About this table 10/80 Novoseek chemical compound relationships for TNFRSF1B gene (see all 80 ) About this table
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
etanercept
69.4
34
11574988 (1), 12110156 (1), 16796629 (1), 10904249 (1) (see all 29 )
infliximab
54.4
13
19370184 (2), 12110156 (1), 19136378 (1), 12421092 (1) (see all 10 )
tapi
52.1
4
7869036 (2)
neopterin
48.3
9
9764776 (2), 15642275 (2), 16273760 (1), 10973464 (1) (see all 6 )
gp 130
41.1
7
10575186 (2), 19631179 (1), 19107325 (1), 10414448 (1) (see all 5 )
il 10
29.6
9
12011375 (3), 8891726 (1), 11508666 (1), 19186969 (1)
fmlp
29.4
8
7998940 (3), 8946217 (1), 9886420 (1)
endotoxin
27.9
5
1322942 (1), 7622886 (1), 17244513 (1), 9185243 (1) (see all 5 )
rantes
26.8
8
11562425 (2), 11504986 (2), 10843668 (1), 12376864 (1) (see all 6 )
cuprophan
25.7
2
16988495 (1), 11509797 (1)
Search CenterWatch for drugs/clinical trials and news about TNFRSF1B / TNR1B
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Transcriptsfor TNFRSF1B gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for TNFRSF1B gene: NM_001066.2 Unigene Cluster for TNFRSF1B:
Tumor necrosis factor receptor superfamily, member 1B Hs.256278 [show with all ESTs ] Unigene Representative Sequence: BC052977 4 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000376259 (uc001att.3 uc009vnk.3 ) ENST00000492361 (uc001atu.3 )ENST00000489921 ENST00000536782 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TNFRSF1B (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TNFRSF1BOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: TNFRSF1B (NM_001066 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TNFRSF1B Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TNFRSF1B
Additional cDNA sequence: AY148473.1 BC011844.2 BC042167.1 BC052977.1 BT019927.1 EU826615.1 M32315.1 M35857.1 M55994.1 S63368.1
7 DOTS entries : DT.415651 DT.100823263
DT.100823260 DT.95169202 DT.100823259 DT.100823262 DT.101984571 24/183 AceView cDNA sequences (see all 183 ):
AA470868 F01858 BE138861 AI307670 AJ346375 AA972749 BU899219 CB069666 AI762184 BU158001 AA533208 AI247670 CA435681 BM993941 AI422018 T78122 CD610462 BC042167 BM129147 AW170706 S63368 AW468069 AI659001 NM_001066 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for TNFRSF1B About this scheme ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b SP1 :           -                     SP2 :           -           -   -         SP3 :         -   -                     SP4 :                              
ECgene alternative splicing isoforms for TNFRSF1B
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Expression for TNFRSF1B gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section TNFRSF1B expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: ATGGAGCGCA
About this image TNFRSF1B expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See TNFRSF1B Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for TNFRSF1B SOURCE GeneReport for Unigene cluster: Hs.256278 SABiosciences Expression via Pathway-Focused PCR Arrays including TNFRSF1B (see all 12 ): Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for TNFRSF1BBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat TNFRSF1B QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat TNFRSF1B QIAGEN QuantiFast Probe-based Assays in human , mouse , rat TNFRSF1B In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TNFRSF1B
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Orthologsfor TNFRSF1B gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for TNFRSF1B gene from 2/10 species (see all 10 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
TNFRSF1B1
tumor necrosis factor receptor superfamily, member more
48.02(n) 38.37(a)
 
395083 NM_204439.2 NP_989770.2
zebrafish (Danio rerio)
Actinopterygii
zgc:1630641
zgc:163064
41.4(n) 31.84(a)
 
100037357 NM_001089510.1 NP_001082979.1
ENSEMBL Gene Tree for TNFRSF1B (if available)TreeFam Gene Tree for TNFRSF1B (if available)
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Paralogsfor TNFRSF1B gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for TNFRSF1B gene TNFRSF21 2 TNFRSF6B 2 CD40 2 TNFRSF4 2 TNFRSF11A 2 TNFRSF9 2 NGFR 2 TNFRSF14 2 TNFRSF11B 2 LTBR 2 3 SIMAP similar genes for TNFRSF1B using alignment to 2 protein entries: TNR1B_HUMAN (see all proteins ):TNFR1B CD40 TNFRSF6B
TNFRSF1B for paralogs About GeneDecksing
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Genomic Variantsfor TNFRSF1B gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 1 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More