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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

TNFRSF1B Gene

protein-coding   GIFtS: 71
GCID: GC01P012161

tumor necrosis factor receptor superfamily, member 1B


(Previous symbol: TNFR2)
 Explore 197 diseases affiliated with
TNFRSF1B via our new
 Human Malady Compendium 
Biological research products
for TNFRSF1B
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Tumor Necrosis Factor Receptor Superfamily, Member 1B1 2     P80 TNF-Alpha Receptor2 3
TNFBR1 2 3 5     TBPII2
TNFR21 2 3 5     TNFR1B2
P751     P75 TNF Receptor2
CD120b1 2     P75TNFR1
TNF-R-II1 2     Soluble TNFR1B Variant 12
TNF-R751 2     Tumor Necrosis Factor Beta Receptor2
TNFR801 2     Tumor Necrosis Factor Binding Protein 22
Tumor Necrosis Factor Receptor 22 3     Tumor Necrosis Factor Receptor Superfamily Member 1B2
Tumor Necrosis Factor Receptor Type II2 3     Etanercept3
TNF-R22 3     TNFR-II3
TNF-RII2 3     CD120b Antigen3

External Ids:    HGNC: 119171   Entrez Gene: 71332   Ensembl: ENSG000000281377   OMIM: 1911915   UniProtKB: P203333   

Export aliases for TNFRSF1B gene to outside databases

Previous GC identifers: GC01P012291 GC01P012071 GC01P011836 GC01P011936 GC01P011380


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for TNFRSF1B:
The protein encoded by this gene is a member of the TNF-receptor superfamily. This protein and TNF-receptor 1 form a
heterocomplex that mediates the recruitment of two anti-apoptotic proteins, c-IAP1 and c-IAP2, which possess E3
ubiquitin ligase activity. The function of IAPs in TNF-receptor signalling is unknown, however, c-IAP1 is thought to
potentiate TNF-induced apoptosis by the ubiquitination and degradation of TNF-receptor-associated factor 2, which
mediates anti-apoptotic signals. Knockout studies in mice also suggest a role of this protein in protecting neurons
from apoptosis by stimulating antioxidative pathways. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: TNR1B_HUMAN, P20333
Function: Receptor with high affinity for TNFSF2/TNF-alpha and approximately 5-fold lower affinity for homotrimeric
TNFSF1/lymphotoxin-alpha. The TRAF1/TRAF2 complex recruits the apoptotic suppressors BIRC2 and BIRC3 to
TNFRSF1B/TNFR2. This receptor mediates most of the metabolic effects of TNF-alpha. Isoform 2 blocks TNF-alpha-induced
apoptosis, which suggests that it regulates TNF-alpha function by antagonizing its biological activity

Gene Wiki entry for TNFRSF1B


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000001.10  NC_018912.1  NT_021937.19  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the TNFRSF1B gene promoter:
         AML1a   STAT3   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTNFRSF1B promoter sequence
   Search SABiosciences Chromatin IP Primers for TNFRSF1B

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TNFRSF1B


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1p36.22   Ensembl cytogenetic band:  1p36.22   HGNC cytogenetic band: 1p36.22

TNFRSF1B Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TNFRSF1B gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01P012161:  view genomic region     (about GC identifiers)

Start:
12,227,060 bp from pter      End:
12,269,285 bp from pter
Size:
42,226 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: TNR1B_HUMAN, P20333 (See protein sequence)
Recommended Name: Tumor necrosis factor receptor superfamily member 1B precursor  
Size: 461 amino acids; 48291 Da
Subunit: Binds to TRAF2. Interacts with BMX
Subcellular location: Isoform 1: Cell membrane; Single-pass type I membrane protein
Subcellular location: Isoform 2: Secreted
Subcellular location: Tumor necrosis factor-binding protein 2: Secreted
2 PDB 3D structures from and Proteopedia for TNFRSF1B:
1CA9 (3D)        3ALQ (3D)    
Secondary accessions: B1AJZ3 Q16042 Q6YI29 Q9UIH1
Alternative splicing: 2 isoforms:  P20333-1   P20333-2   

Explore the universe of human proteins at neXtProt for TNFRSF1B: NX_P20333

Post-translational modifications:

  • Phosphorylated; mainly on serine residues and with a very low level on threonine residues1
  • A soluble form (tumor necrosis factor binding protein 2) is produced from the membrane form by proteolytic processing1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P20333

  • TNFRSF1B Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_001057.1  
    ENSEMBL proteins: 
     ENSP00000365435   ENSP00000440425  

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    Uscn Proteins for TNFRSF1B

    Gene Ontology (GO): 5/9 cellular component terms (GO ID links to tree view) (see all 9):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region IEA--
    GO:0005634nucleus IEA--
    GO:0005886plasma membrane IEA--
    GO:0016020membrane ----
    GO:0016021integral to membrane IEA--


    TNFRSF1B for ontologies           About GeneDecksing



    TNFRSF1B Antibody Products: 
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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    TNFRSF1B for domains           About GeneDecksing

    2 InterPro domains/families:
     IPR001368 TNFR/NGFR_Cys_rich_reg
     IPR020411 TNFR_1B

    Graphical View of Domain Structure for InterPro Entry P20333

    ProtoNet protein and cluster: P20333

    1 Blocks protein family: IPB001368 TNFR/CD27/30/40/95 cysteine-rich region

    UniProtKB/Swiss-Prot: TNR1B_HUMAN, P20333
    Similarity: Contains 4 TNFR-Cys repeats


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: TNR1B_HUMAN, P20333
    Function: Receptor with high affinity for TNFSF2/TNF-alpha and approximately 5-fold lower affinity for homotrimeric
    TNFSF1/lymphotoxin-alpha. The TRAF1/TRAF2 complex recruits the apoptotic suppressors BIRC2 and BIRC3 to
    TNFRSF1B/TNFR2. This receptor mediates most of the metabolic effects of TNF-alpha. Isoform 2 blocks TNF-alpha-induced
    apoptosis, which suggests that it regulates TNF-alpha function by antagonizing its biological activity

         Genatlas biochemistry entry for TNFRSF1B:
    tumor necrosis factor receptor superfamily,member 1B,deleted in neuroblastoma,associated with susceptibility to
    systemic lupus erythematosus

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    8/37 QIAGEN miScript miRNA Assays for microRNAs that regulate TNFRSF1B (see all 37):
    hsa-miR-3938 hsa-let-7d hsa-miR-301a hsa-miR-486-3p hsa-let-7g hsa-let-7a hsa-miR-130b hsa-miR-301b
    SwitchGear 3'UTR luciferase reporter plasmidTNFRSF1B 3' UTR sequence
    Inhib. RNA
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    Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005031tumor necrosis factor-activated receptor activity IEA--
    GO:0005515protein binding IPI10848577
    GO:0031625ubiquitin protein ligase binding IPI11279055


    TNFRSF1B for ontologies           About GeneDecksing


    1 GenomeRNAi human phenotype for TNFRSF1B:
     Decreased Hepatitis C virus re 

    Animal Models:
         Mouse knock-outs for TNFRSF1B: Tnfrsf1btm1Imx Tnfrsf1btm1Mwm
         15/19 MGI mutant phenotypes (inferred from 3 alleles(MGI details for Tnfrsf1b) (see all 19):
     adipose tissue  behavior/neurological  cardiovascular system  cellular  digestive/alimentary 
     endocrine/exocrine gland  hematopoietic system  homeostasis/metabolism  immune system  integument 
     liver/biliary system  mortality/aging  muscle  nervous system  renal/urinary system 

    TNFRSF1B for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/28 super-pathways (see all 28About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Apoptosis and survival_Anti-apoptotic TNFs/NF-kB/Bcl-2 pathway
    Apoptosis and survival Anti-apoptotic TNFs/NF-kB/Bcl-2 pathway1.00
    Apoptosis and survival_Anti-apoptotic TNFs/NF-kB/IAP pathway0.46
    Apoptosis and survival_Anti-apoptotic TNFs/NF-kB/Bcl-2 pathway1.00
    Apoptosis and survival Anti-apoptotic TNFs/NF-kB/IAP pathway0.46
    2TGF-Beta Pathway
    TGF-Beta Pathway1.00
    JAK-STAT Pathway0.57
    MAPK Family Pathway0.60
    JNK Pathway0.50
    3PEDF Induced Signaling
    STAT3 Pathway0.47
    Glucocorticoid Receptor Signaling0.27
    PGC1Alpha Pathway0.33
    Cytokine-cytokine receptor interaction0.26
    4Akt Signaling
    Akt Signaling1.00
    Tec Kinases Signaling0.55
    p38 Signaling0.60
    5TRAF Pathway
    TRAF Pathway1.00
    TNF Superfamily - Human Ligand-Receptor Interactions & their Associated Functions0.08
    TNF Superfamily Pathway0.42

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    3 EMD Millipore Pathways for TNFRSF1B
        Apoptosis and survival Anti-apoptotic TNFs/NF-kB/Bcl-2 pathway
    Apoptosis and survival Apoptotic TNF-family pathways
    Apoptosis and survival Anti-apoptotic TNFs/NF-kB/IAP pathway

    3 R&D Systems Pathways for TNFRSF1B
        TNF Superfamily - Human Ligand-Receptor Interactions & their Associated Functions
    IL-15 Signaling and its Primary Biological Effects in Different Immune Cell Types
    IL-2 Signaling and its Primary Biological Effects in Different Immune Cell Types

    5/28 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for TNFRSF1B (see all 28)
        Caspase Cascade
    MAPK Signaling
    THC Differentiation Pathway
    TRAF Pathway
    Molecular Mechanisms of Cancer

    2 Cell Signaling Technology (CST) Pathways for TNFRSF1B
        Apoptosis and Autophagy
    NF-kappaB Signaling

    4 GeneGo (Thomson Reuters) Pathways for TNFRSF1B
        Apoptosis and survival Anti-apoptotic TNFs/NF-kB/IAP pathway
    Apoptosis and survival Apoptotic TNF-family pathways
    Transcription NF-kB signaling pathway
    Apoptosis and survival Anti-apoptotic TNFs/NF-kB/Bcl-2 pathway

    5/6 BioSystems Pathways for TNFRSF1B (see all 6
        Apoptosis Modulation and Signaling
    Apoptosis
    IL-3 Signaling Pathway
    TNF-alpha/NF-kB Signaling Pathway
    TNF receptor signaling pathway


    3         Kegg Pathways  (Kegg details for TNFRSF1B):
        Cytokine-cytokine receptor interaction
    Adipocytokine signaling pathway
    Amyotrophic lateral sclerosis (ALS)


    TNFRSF1B for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for TNFRSF1B

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/135 Interacting proteins for TNFRSF1B (P203332, 3 ENSP000003654354) via UniProtKB, MINT, STRING, and/or I2D (see all 135)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    CALM2P621582, 3MINT-49428 I2D: score=2 
    CALM3P621582, 3MINT-49428 I2D: score=2 
    FANCD2Q9BXW92, 3MINT-49427 MINT-48047 I2D: score=4 
    AIFM1O958312, 3, ENSP000002872954MINT-49368 I2D: score=2 STRING: ENSP00000287295
    C1QBPQ070212, 3, ENSP000002256984MINT-49395 I2D: score=2 STRING: ENSP00000225698
    About this table

    Gene Ontology (GO): 5/11 biological process terms (GO ID links to tree view) (see all 11):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006915apoptotic process IEA--
    GO:0006954inflammatory response IEA--
    GO:0006955immune response IEA--
    GO:0007166cell surface receptor signaling pathway ----
    GO:0008219cell death ----


    TNFRSF1B for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    TNFRSF1B for compounds           About GeneDecksing

    EMD Millipore small molecules for TNFRSF1B:
    Small Molecule - inhibitor
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for TNFRSF1B
    UniProtKB/Swiss-Prot: TNR1B_HUMAN, P20333
    Pharmaceutical: Available under the name Enbrel (Immunex and Wyeth-Ayerst). Used to treat moderate to severe rheumatoid
    arthritis (RA). Enbrel consist of the extracellular ligand-binding portion of TNFRSF1B linked to an immunoglobulin Fc
    chain. It binds to TNF-alpha and blocks its interactions with receptors


    1 DrugBank Compound for TNFRSF1B    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    EtanerceptCD120b (see all 7)185243-69-0target--11752352

    10/80 Novoseek chemical compound relationships for TNFRSF1B gene (see all 80)    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    etanercept 69.4 34 11574988 (1), 12110156 (1), 16796629 (1), 10904249 (1) (see all 29)
    infliximab 54.4 13 19370184 (2), 12110156 (1), 19136378 (1), 12421092 (1) (see all 10)
    tapi 52.1 4 7869036 (2)
    neopterin 48.3 9 9764776 (2), 15642275 (2), 16273760 (1), 10973464 (1) (see all 6)
    gp 130 41.1 7 10575186 (2), 19631179 (1), 19107325 (1), 10414448 (1) (see all 5)
    il 10 29.6 9 12011375 (3), 8891726 (1), 11508666 (1), 19186969 (1)
    fmlp 29.4 8 7998940 (3), 8946217 (1), 9886420 (1)
    endotoxin 27.9 5 1322942 (1), 7622886 (1), 17244513 (1), 9185243 (1) (see all 5)
    rantes 26.8 8 11562425 (2), 11504986 (2), 10843668 (1), 12376864 (1) (see all 6)
    cuprophan 25.7 2 16988495 (1), 11509797 (1)

    Search CenterWatch for drugs/clinical trials and news about TNFRSF1B / TNR1B 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for TNFRSF1B gene: 
    NM_001066.2  

    Unigene Cluster for TNFRSF1B:

    Tumor necrosis factor receptor superfamily, member 1B
    Hs.256278  [show with all ESTs]
    Unigene Representative Sequence: BC052977
    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000376259(uc001att.3 uc009vnk.3) ENST00000492361(uc001atu.3)
    ENST00000489921 ENST00000536782

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    hsa-miR-3938 hsa-let-7d hsa-miR-301a hsa-miR-486-3p hsa-let-7g hsa-let-7a hsa-miR-130b hsa-miR-301b
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    Inhib. RNA
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    Additional cDNA sequence: 

    AY148473.1 BC011844.2 BC042167.1 BC052977.1 BT019927.1 EU826615.1 M32315.1 M35857.1 
    M55994.1 S63368.1 

    7 DOTS entries:

    DT.415651  DT.100823263  DT.100823260  DT.95169202  DT.100823259  DT.100823262  DT.101984571 

    24/183 AceView cDNA sequences (see all 183):

    AA470868 F01858 BE138861 AI307670 AJ346375 AA972749 BU899219 CB069666 
    AI762184 BU158001 AA533208 AI247670 CA435681 BM993941 AI422018 T78122 
    CD610462 BC042167 BM129147 AW170706 S63368 AW468069 AI659001 NM_001066 

    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for TNFRSF1B    About this scheme

    ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b
    SP1:                                -                                                         
    SP2:                                -                             -     -                     
    SP3:                          -     -                                                         
    SP4:                                                                                          


    ECgene alternative splicing isoforms for TNFRSF1B

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    TNFRSF1B expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: ATGGAGCGCA

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    TNFRSF1B expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    Stem Cell Differentiation: 9 LifeMap Cells 
    NameCategory
    PureStem™ endothelial progenitor 30-MV2-12 (Embryonic Progenitor Cell)Blood, Endothelium
    PureStem™ mesenchymal progenitor 7PEND24 (Embryonic Progenitor Cell)Cartilage, Neural Crest
    PureStem™ endothelial progenitor 30-MV2-14 (Embryonic Progenitor Cell)Endothelium
    PureStem™ progenitor EN13 (Embryonic Progenitor Cell)
    PureStem™ progenitor EN2 (Embryonic Progenitor Cell)
    PureStem™ progenitor EN7 (Embryonic Progenitor Cell)
    PureStem™ progenitor W10 (Embryonic Progenitor Cell)
    PureStem™ progenitor W8 (Embryonic Progenitor Cell)
    Syncytiotrophoblast-like cells (Generation of syncyt...)
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See TNFRSF1B Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for TNFRSF1B

    SOURCE GeneReport for Unigene cluster: Hs.256278
        SABiosciences Expression via Pathway-Focused PCR Arrays including TNFRSF1B (see all 12): 
              HIV Host Response in human mouse rat
              NFKB Signaling Targets in human mouse rat
              Multiple Sclerosis in human mouse rat
              Lymphoma in human mouse rat
              Apoptosis in human mouse rat

    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for TNFRSF1B
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat TNFRSF1B
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TNFRSF1B
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TNFRSF1B
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TNFRSF1B

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for TNFRSF1B gene from 2/10 species (see all 10)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves TNFRSF1B1 tumor necrosis factor receptor superfamily, member more 48.02(n)
    38.37(a)
      395083  NM_204439.2  NP_989770.2 
    zebrafish
    (Danio rerio)
    Actinopterygii zgc:1630641 zgc:163064 41.4(n)
    31.84(a)
      100037357  NM_001089510.1  NP_001082979.1 


    ENSEMBL Gene Tree for TNFRSF1B (if available)
    TreeFam Gene Tree for TNFRSF1B (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for TNFRSF1B gene
    TNFRSF212  TNFRSF6B2  CD402  TNFRSF42  TNFRSF11A2  TNFRSF92  NGFR2  TNFRSF142  
    TNFRSF11B2  LTBR2  
    3 SIMAP similar genes for TNFRSF1B using alignment to 2 protein entries:     TNR1B_HUMAN (see all proteins):
    TNFR1B    CD40    TNFRSF6B

    TNFRSF1B for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    914 NCBI SNPs in TNFRSF1B are shown (see top 10    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs57459371,2
    C,F,H,--11378594(+) CAGTCT/CGTTGG 1 -- us2k16Minor allele frequency- C:0.00NS EA 510
    rs6526251,2
    C,F,A,H,--11378600(-) ATGGGA/TCCAAC 1 -- us2k137Minor allele frequency- T:0.20EA NA NS WA CSA 3630
    rs57459381,2
    C,F,--11378623(+) GTGTGG/TGGGAC 1 -- us2k15Minor allele frequency- T:0.04NS NA 360
    rs6525991,2
    C,F,--11378624(-) TGTCCC/TCCACA 1 -- us2k124Minor allele frequency- G:0.03EA NA NS WA CSA 2748
    rs57459401,2
    C,F,--11379169(+) CTGGCA/CCTCAA 1 -- us2k1 tfbs36Minor allele frequency- C:0.02NS NA WA 368
    rs57459411,2
    C,--11379183(+) GGGGAT/CGGGGG 1 -- us2k11Minor allele frequency- C:0.01NS 156
    rs57459421,2
    C,F,--11379218(+) CTCGGT/CCATGA 1 -- us2k15Minor allele frequency- C:0.03NS WA CSA 280
    rs118079731,2
    C,F,H,--11379222(+) GTCATG/TATGTA 1 -- us2k1 tfbs311Minor allele frequency- T:0.05NS NA WA 870
    rs563863041,2
    C--11379472(+) GTAGAC/TACTTA 1 -- us2k11Minor allele frequency- T:0.50WA 2
    rs37535761,2
    C,F,H,--11379519(-) AGATAT/CGTAAT 1 -- us2k14Minor allele frequency- C:0.02EA NS NA 609
    rs57459431,2
    C,F,--11379637(+) AGCACC/ATTGGG 1 -- us2k15Minor allele frequency- A:0.01NS NA 266
    rs178812581,2
    C,--11379875(+) CAAAAA/GAAATT 1 -- us2k1 tfbs32Minor allele frequency- G:0.01NS 72
    rs57459441,2
    C,F,--11379921(+) TAAATA/GAGTGA 1 -- us2k14Minor allele frequency- G:0.04NS WA CSA 185
    rs769139631,2
    F,--11379944(+) TCTCTT/CGGTTC 1 -- us2k11Minor allele frequency- C:0.02WA 118
    rs6258471,2
    C,F,--11379967(-) CAAAGC/TTGACA 1 -- us2k112Minor allele frequency- T:0.04NS CSA NA 1958
    rs57459451,2
    C,--11379997(+) AGTGCC/TTCACC 1 -- us2k12Minor allele frequency- T:0.03NS WA 246
    rs362059481,2
    C,--11380155(+) GGTATC/TGGCCC 1 -- us2k10--------
    rs30797501,2
    C,F--11380197(+) GCAGC-/AGCGTCTG 1 -- us2k11Minor allele frequency- AGC:0.03NS 168
    rs1115666911,2
    C,--11380216(+) CGTGGG/AGGAGG 1 -- us2k11Minor allele frequency- A:0.50WA 2
    rs178860391,2
    C,F,--11380249(+) CGCCCC/TGCCCC 1 -- us2k12Minor allele frequency- T:0.02NS 92
    rs57459491,2
    C,--11380324(+) GCGGAG/TCCTGG 1 -- ut511Minor allele frequency- T:0.01NS 164
    rs57459511,2
    F--11380370(+) AGGGC-/GCG   
       AGGGC
    AGGGG
    1 -- ut511Minor allele frequency- GCGAGGGC:0.02NS 150
    rs57459521,2
    C,F--11380552(+) GTGCCC/GGGGCC 1 -- int12Minor allele frequency- G:0.03NS WA 182
    rs1113143801,2
    F--11381071(+) CGATGC/TGTCCG 1 -- int12Minor allele frequency- T:0.50CSA 4
    rs57459541,2
    C,F,H,--11381091(+) GCAGAG/CTCTGT 1 -- int116Minor allele frequency- C:0.06NS EA NA WA 1436
    rs57459551,2
    C,F,A,--11381115(+) TGGGGA/GCAGGG 1 -- int16Minor allele frequency- G:0.07NS NA WA 354
    rs57459561,2
    C,F,A,--11381121(+) CAGGGC/GAAGCG 1 -- int18Minor allele frequency- G:0.05NS EA NA WA 538
    rs57459571,2
    C,F,--11381483(+) GCTGCG/AGGGAA 1 -- int11Minor allele frequency- A:0.01NS 180
    rs728634591,2
    C,--11381515(+) AGAGCC/TGCCCC 1 -- int11Minor allele frequency- T:0.50WA 2
    rs57459581,2
    C,--11381564(+) TGACCG/AAGGAG 1 -- int1 trp31Minor allele frequency- A:0.01NS 180
    rs178801791,2
    C,F,--11381841(+) CTGGCC/TTCAGA 1 -- int12Minor allele frequency- T:0.02NS 92
    rs117994761,2
    H--11382019(+) TCCTGA/CGGCAG 1 -- int10--------
    rs5952541,2
    C,F,A,--11382060(-) GGGGTC/GGTGGG 1 -- int112Minor allele frequency- G:0.12EA NA MN NS WA CSA 434
    rs1123567581,2
    F--11382120(+) TCTCCC/AGCTGA 1 -- int12Minor allele frequency- A:0.50CSA 4
    rs178845951,2
    C,F,--11382260(+) TTCCTC/TGCGCC 1 -- int15Minor allele frequency- T:0.02NS NA 218
    rs4806021,2
    C,F,--11382689(-) agttgC/Ttgtaa 1 -- int14Minor allele frequency- T:0.03NA NS 98
    rs1130583791,2
    F,--11383287(+) CTGGAC/TGTCAA 1 -- int12Minor allele frequency- T:0.50CSA 4
    rs178830941,2
    C,F,--11383331(+) CCTGGG/AGGCTC 1 -- int16Minor allele frequency- A:0.03NS NA CSA WA 336
    rs615824001,2
    C,--11383555(+) GCTCTG/CGGGAC 1 -- int11Minor allele frequency- C:0.50WA 2
    rs178789201,2
    C,--11383644(+) CCAACT/AGCCCT 1 -- int12Minor allele frequency- A:0.01NS 94
    rs178786101,2
    C,F,--11383695(+) TGGTTG/TTGGAA 1 -- int111Minor allele frequency- T:0.06NS WA 1818
    rs6748461,2
    C,F,--11383772(-) TCTGAC/TGTAAG 1 -- int17Minor allele frequency- T:0.01EA NA NS 152
    rs14762421,2
    --11383799(-) GCCAGA/GTGCCA 1 -- int10--------
    rs5590111,2
    C,F,A,H,--11383881(-) CTCCTC/GCAGAA 1 -- int117Minor allele frequency- G:0.08NS EA NA WA CSA 2134
    rs45704351,2
    H--11384831(+) tttgtA/Tttcct 1 -- int14Minor allele frequency- T:0.00NS EA 396
    rs120621341,2
    C,F,H,--11384904(+) agtacC/Tgtgag 1 -- int112Minor allele frequency- T:0.05NS EA NA WA 1308
    rs178843951,2
    C,--11385391(+) AGTGAG/AGGATG 1 -- int14Minor allele frequency- A:0.01NS NA 98
    rs178824451,2
    C--11385594(+) TCTGAA/GTCAGA 1 -- int12Minor allele frequency- G:0.01NS 88
    rs118096611,2
    C,F,H,--11385766(+) GCTATT/ATGAGC 1 -- int120Minor allele frequency- A:0.05NS EA NA CSA WA 1958
    rs798238811,2
    F,--11385904(+) CCTGCA/GGTTGC 1 -- int11Minor allele frequency- G:0.03EA 120
    rs1138279311,2
    F--11385953(+) TCAGAG/AAGCAA 1 -- int12Minor allele frequency- A:0.50CSA 4
    rs57459591,2
    H--11386210(+) AGATGG/AGCACG 1 -- int15Minor allele frequency- A:0.00NS EA 576
    rs57459601,2
    H--11386248(+) TCTTCC/TATCTC 1 -- int15Minor allele frequency- T:0.00NS EA 600
    rs1117877821,2
    --11386255(+) TCTCCG/AACCTC 1 -- int11Minor allele frequency- A:0.50CSA 2
    rs4949641,2
    C,F,H,--11386258(-) ACAGAG/AGTTGG 1 -- int121Minor allele frequency- A:0.02NS EA NA WA 2312
    rs1128655101,2
    --11386512(+) CCTAAC/TAACCC 1 -- int11Minor allele frequency- T:0.50CSA 2
    rs57459611,2
    C,F,H,--11386554(+) AGTGTC/TGGCTT 1 -- int110Minor allele frequency- T:0.00NS EA NA 802
    rs178811001,2
    C--11387049(+) TGCCCC/TCTTCC 1 -- int12Minor allele frequency- T:0.01NS 90
    rs9768801,2
    --11387324(-) CTCCCC/TCCGCA 1 -- int1 trp31Minor allele frequency- T:0.00NA 2
    rs8160521,2
    --11387569(-) agaagG/Aagaag 1 -- int1 trp32Minor allele frequency- A:0.00NA 4
    rs283704551,2
    --11387575(+) CTTCTT/CCTTCT 1 -- int1 trp32Minor allele frequency- C:0.00NA 4
    rs57459641,2
    C,F,--11387774(+) CAGGCT/AGGTCT 1 -- int16Minor allele frequency- A:0.02NS NA 264
    rs57459651,2
    C,F,--11387781(+) GTCTCG/CAACTC 1 -- int15Minor allele frequency- C:0.01NS NA 258
    rs5984921,2
    C,F,--11387878(-) CTACTT/CTNNNN 1 -- int113Minor allele frequency- C:0.03NA NS WA EA 1100
    rs5979911,2
    C,F,--11388023(-) CTGGGG/TCCTGA 1 -- int16Minor allele frequency- T:0.03EA NA NS 148
    rs57459661,2
    C,--11388033(+) GGAGGG/ACCAGC 1 -- int11Minor allele frequency- A:0.01NS 176
    rs178839241,2
    C,--11388051(+) CCTACC/TCCCTC 1 -- int1 trp33Minor allele frequency- T:0.01NS NA 92
    rs5975191,2
    C,F,A,H,--11388141(-) AGTACA/GTCTGA 1 -- int123Minor allele frequency- G:0.03EA NA NS WA 2602
    rs120903851,2
    C,F,H,--11388239(+) ACAGCG/ACAGAA 1 -- int115Minor allele frequency- A:0.01NS EA NA WA 1268
    rs178813741,2
    C,--11388388(+) AGAGCG/AGGAGG 1 -- int12Minor allele frequency- A:0.01NS 90
    rs57459671,2
    C,F,--11388427(+) GGGAGG/AGGGGA 1 -- int1 trp35Minor allele frequency- A:0.02NS NA 392
    rs57459681,2
    C,H,--11388575(+) GGAGAA/GCTTGG 1 -- int15Minor allele frequency- G:0.00NS EA 590
    rs57459691,2
    C,F,--11388687(+) GGTGGA/GGTGCA 1 -- int15Minor allele frequency- G:0.02NS NA 272
    rs1135337461,2
    C,--11388704(+) ACTGCC/TACGTC 1 -- int12Minor allele frequency- T:0.03WA 120
    rs57459711,2
    C,F,--11388712(+) GTCACC/TCAGCT 1 -- int17Minor allele frequency- T:0.02NS NA EA 514
    rs178811481,2
    C,--11388980(+) CCCAGC/GTCCCT 1 -- int14Minor allele frequency- G:0.01NS NA 94
    rs780801191,2
    F,--11388988(+) CCTCAA/GGCCCC 1 -- int11Minor allele frequency- G:0.02EA 120
    rs1120145851,2
    C,--11389416(+) AGTCCC/TAGCTA 1 -- int11Minor allele frequency- T:0.50WA 2
    rs611966971,2
    --11389486(+) GAGATC/TGCACC 1 -- int10--------
    rs1117214091,2
    C,--11389583(+) TGTTAG/-GACTG 1 -- int11Minor allele frequency- -:0.50CSA 2
    rs125684401,2
    H--11390290(+) CCTGAA/GCCCTG 1 -- int10--------
    rs178802411,2
    C,F--11390307(+) AGCCCTGAG    
       CCC
    /-
    AATGG
    1 -- int12Minor allele frequency- -:0.07NS 88
    rs178856721,2
    C,F,--11390461(+) CAGGCG/ATGCCC 1 -- int12Minor allele frequency- A:0.06NS 86
    rs178827271,2
    C,--11390626(+) CAGTGG/AACTGA 1 -- int13Minor allele frequency- A:0.02NS WA 206
    rs728634731,2
    C,--11390677(+) CAGTCG/AGTCAC 1 -- int12Minor allele frequency- A:0.03WA 120
    rs178842981,2
    C,F,--11390833(+) CGCTGC/TTACCC 1 -- int14Minor allele frequency- T:0.11NS CSA WA 210
    rs1117309341,2
    C,--11391030(+) TGAACC/TTGGGA 1 -- int11Minor allele frequency- T:0.50WA 2
    rs178859671,2
    C,F,--11391234(+) AACATC/TATCCC 1 -- int19Minor allele frequency- T:0.04NS NA WA CSA 336
    rs178840961,2
    C,--11391239(+) CATCCC/ACATTT 1 -- int13Minor allele frequency- A:0.01NS WA 206
    rs1130601751,2
    F--11391403(+) GAGCCG/ACTGTC 1 -- int12Minor allele frequency- A:0.50CSA 4
    rs1121569781,2
    C,--11391452(+) CGCCGC/TCCCCT 1 -- int12Minor allele frequency- T:0.04WA 120
    rs726426171,2
    --11391872(+) CGGGTA/GTGGGC 1 -- int10--------
    rs178799221,2
    C--11391994(+) GGTCGG/AGGGTG 1 -- int12Minor allele frequency- A:0.01NS 90
    rs178796341,2
    C,F,--11392002(+) GTGGCG/AGGTCA 1 -- int13Minor allele frequency- A:0.02NS CSA 91
    rs57459721,2
    C,F,--11392085(+) TGTGAC/GAGCAA 1 -- int14Minor allele frequency- G:0.04NS WA CSA 172
    rs6459841,2
    C,F,A,--11392143(-) CCTGCG/ACAACC 1 -- int19Minor allele frequency- A:0.03NS EA NA WA CSA 444
    rs57459731,2
    C,F,H,--11392226(+) AGGGAC/TAGAAG 1 -- int116Minor allele frequency- T:0.04NS EA NA WA 1444
    rs178855081,2
    C,F,--11392283(+) GGGCAG/TCGAGG 1 -- int13Minor allele frequency- T:0.06NS WA 212
    rs1127680171,2
    --11392285(+) GCAGCG/AAGGAG 1 -- int11Minor allele frequency- A:0.50CSA 2
    rs57459741,2
    H--11392299(+) GGGTCG/ATGGGA 1 -- int15Minor allele frequency- A:0.00NS EA 580
    rs4996461,2
    C,F,A,H,--11392345(-) CCCACC/TGTCAC 1 -- int113Minor allele frequency- T:0.08NS EA NA WA CSA 936
    rs57459751,2
    C,F,--11392407(+) ATGCCC/TGGCGT 1 -- int15Minor allele frequency- T:0.02NS NA 394
    rs6327561,2
    C,F,A,H,--11392776(-) ACCACG/ATCATT 1 -- int116Minor allele frequency- A:0.02NS EA NA 1534
    rs57459771,2
    C,F,H,--11392786(+) TTTCCG/ACATTG 1 -- int118Minor allele frequency- A:0.10NS EA NA CSA WA 1992
    rs6326561,2
    C,F,--11392839(-) AGGTAT/CCTGCC 1 -- int15Minor allele frequency- C:0.01NA NS 274
    rs1113204891,2
    --11392860(+) CCACAG/CCTTTG 1 -- int11Minor allele frequency- C:0.50CSA 2
    rs1128654401,2
    F,--11392944(+) GTTCAC/TAGAAG 1 -- int12Minor allele frequency- T:0.50CSA 4
    rs57459781,2
    C,--11393254(+) AGTCTC/TTGTTC 1 -- int11Minor allele frequency- T:0.01NS 176
    rs57459791,2
    F--11393305(+) CTGAAG/ACTTCT 1 -- int11Minor allele frequency- A:0.02NS 176
    rs57459801,2
    C,F,H,--11393353(+) TCAGCG/AGGTAG 1 -- int16Minor allele frequency- A:0.01NS EA WA 596
    rs57459811,2
    C,F,H,--11393402(+) GCATGA/TCCTCT 1 -- int111Minor allele frequency- T:0.02NS EA NA 1730
    rs772092311,2
    F,--11393465(+) AGGCCG/AGGCAC 1 -- int11Minor allele frequency- A:0.05EA 120
    rs57459821,2
    H--11393596(+) AAAATA/TATAAT 1 -- int15Minor allele frequency- T:0.00NS EA 582
    rs57459851,2
    C,F,H,--11393852(+) GACGCA/TAACTC 1 -- int18Minor allele frequency- T:0.01NS EA NA WA 598
    rs178804481,2
    C,F,--11393948(+) ACCTGC/TAGCCC 1 -- int13Minor allele frequency- T:0.02NS CSA 82
    rs57459871,2
    C,F,--11393978(+) CTGAGT/GCCTCC 1 -- int17Minor allele frequency- G:0.08NS NA CSA WA 378
    rs37667281,2
    C,H,--11394146(-) GACGAT/CGCGGC 1 -- int16Minor allele frequency- C:0.01EA NS 1990
    rs37667271,2
    H--11394201(-) TCTGGG/ATGAGT 1 -- int14Minor allele frequency- A:0.00NS EA 406
    rs5501321,2
    C,F,A,H,--11394306(-) AGTGCA/GACAGG 1 -- int123Minor allele frequency- G:0.07NS EA NA WA CSA 2702
    rs5271891,2
    C,F,--11394518(-) GTGTTA/GGATGG 1 -- int13Minor allele frequency- G:0.02NS WA CSA 162
    rs5252831,2
    C,F,A,--11394725(-) GCCCCT/CGGGGA 1 -- int19Minor allele frequency- C:0.03NS NA WA CSA 487
    rs178840361,2
    C,--11394848(+) GACCCA/GCTACC 1 -- int13Minor allele frequency- G:0.02NS WA 212
    rs57459881,2
    H--11394867(+) CTGGCG/AGTGCA 1 -- int15Minor allele frequency- A:0.00NS EA 556
    rs57459891,2
    C,F,H,--11394928(+) TCAGCG/ACCCCT 1 -- int19Minor allele frequency- A:0.01NS EA NA 790
    rs178807561,2
    C,F,--11395109(+) GCCCAA/GCTCTG 1 -- int15Minor allele frequency- G:0.02NS NA 206
    rs57459911,2
    C,F,--11395111(+) CCAACT/GCTGCC 1 -- int116Minor allele frequency- G:0.11NS NA WA CSA 1087
    rs57459921,2
    C,F--11395242(+) AAGAAC/TCCAGG 1 -- int15Minor allele frequency- T:0.01NS NA 254
    rs728634841,2
    C,--11395335(+) ACTGCC/TCACAG 1 -- int11Minor allele frequency- T:0.50WA 2
    rs5190641,2
    C,F,H,--11395352(-) CTCAAG/ATGTCT 1 -- int117Minor allele frequency- A:0.02NS EA NA CSA 1446
    rs178801041,2
    C,F,--11395765(+) TTGAAC/TGTGCA 1 -- int18Minor allele frequency- T:0.00NS 732
    rs178852261,2
    F--11395896(+) TGAAT-/GAAT  
            
    CACTG
    1 -- int12Minor allele frequency- GAAT:0.15NS 80
    rs178814091,2
    C,--11396015(+) TTTTAT/AACAGT 1 -- int14Minor allele frequency- A:0.03NS NA 200
    rs178788591,2
    C,F,--11396397(+) TAACAC/TGCACA 1 -- int14Minor allele frequency- T:0.04NS CSA 92
    rs120437811,2
    H--11396673(+) ATCTCA/CTCTGT 1 -- int14Minor allele frequency- C:0.00NS EA 398
    rs6805371,2
    --11397010(-) gatagA/Ctagat 1 -- int10--------
    rs12011331,2
    A,--11397063(-) gctagC/Atagat 1 -- int12Minor allele frequency- A:0.00NA 4
    rs1132994931,2
    --11397075(+) AGCTAT/GCTAGC 1 -- int11Minor allele frequency- G:0.00CSA 1
    rs767691201,2
    C,--11397079(+) AGCTAG/TCTATC 1 -- int11Minor allele frequency- T:0.50WA 2
    rs178856091,2
    C,F,--11397422(+) CCCCAA/GTCCAA 1 -- int19Minor allele frequency- G:0.03NS WA 838
    rs178803211,2
    C,F,--11397492(+) TGGGGA/-CCTCC 1 -- int12Minor allele frequency- -:0.02NS 86
    rs728634911,2
    C,--11397754(+) CACAGG/AGCCAG 1 -- int11Minor allele frequency- A:0.50WA 2
    rs784007271,2
    --11397958(+) GCCCTC/TGTCCA 1 -- int10--------
    rs178856921,2
    C,F,--11397968(+) ATTGCG/AGCTCT 1 -- int14Minor allele frequency- A:0.02NS NA 98
    rs120489841,2
    H--11398406(+) CTGCCG/ACAGTT 1 -- int14Minor allele frequency- A:0.00NS EA 390
    rs48458971,2
    C,F,A,--11398986(+) GGGCCT/ACCGGG 1 -- int17Minor allele frequency- A:0.10NS NA WA EA 450
    rs178854701,2
    C--11399032(+) TTTGCG/AGCCCT 1 -- int12Minor allele frequency- A:0.01NS 88
    rs726426221,2
    --11399063(+) ACAGGA/GAAGGA 1 -- int10--------
    rs178832161,2
    C,--11399435(+) AGGAAG/TCCCCA 1 -- int12Minor allele frequency- T:0.01NS 70
    rs740533541,2
    C,--11399437(+) GAAGCC/ACCAGC 1 -- int12Minor allele frequency- A:0.03WA 120
    rs12011311,2
    --11399716(-) GCACCG/ACTGGG 1 -- int13Minor allele frequency- A:0.00MN NA 188
    rs57459941,2
    C,F,H,--11400382(+) GAGACC/TCGAGA 1 -- int19Minor allele frequency- T:0.01NS EA NA 734
    rs57459951,2
    C,H,--11400516(+) TGGAAG/ATGCAG 1 -- int15Minor allele frequency- A:0.00NS EA 594
    rs557441881,2
    C,--11400521(+) GTGCAG/ATGGCA 1 -- int11Minor allele frequency- A:0.50WA 2
    rs57459971,2
    C,F,--11400620(+) CCACTA/GTGCCG 1 -- int12Minor allele frequency- G:0.02NS WA 176
    rs6063801,2
    --11400749(-) tggtgA/Gctcac 1 -- int10--------
    rs178814871,2
    C,--11400764(+) TGGCCC/TTCTCT 1 -- int1 trp33Minor allele frequency- T:0.02NS WA 186
    rs5299321,2
    H,--11400781(-) GTGATG/AAATGA 1 -- int14Minor allele frequency- A:0.00NS EA 410
    rs23012581,2
    C,F,--11401194(+) TTGTAC/TCAGGG 1 -- int18Minor allele frequency- T:0.03NS NA WA 1308
    rs57459991,2
    C,F,H,--11401197(+) TACCAG/TGGTGG 1 -- int16Minor allele frequency- T:0.00NS EA WA 568
    rs6036861,2
    H,--11401361(-) tgaagC/Aactgc 1 -- int16Minor allele frequency- A:0.00NS EA NA 418
    rs57460001,2
    C,F,H,--11401604(+) CCCACG/ATTTAG 1 -- int15Minor allele frequency- A:0.01NS EA 582
    rs590337061,2
    C,--11401751(+) TCCTCA/GGCAGA 1 -- int12Minor allele frequency- G:0.03WA 120
    rs178842811,2
    C,F,--11401781(+) ACCCCC/TGTTCT 1 -- int13Minor allele frequency- T:0.02NS CSA 92
    rs57460021,2
    C,F,H,--11401812(+) TTCTGG/AATATC 1 -- int110Minor allele frequency- A:0.01NS EA NA WA 790
    rs178837211,2
    C,--11401847(+) CCCAGC/TACTGG 1 -- int13Minor allele frequency- T:0.01NS WA 206
    rs5909431,2
    C,F,H,--11401939(-) GAGCTC/TGTGCC 1 -- int116Minor allele frequency- T:0.02EA NA NS CSA WA 932
    rs57460031,2
    C,F,H,--11401993(+) TCATCA/TGTGCA 1 -- int115Minor allele frequency- T:0.06NS EA NA WA 1458
    rs57460041,2
    C,F,H,--11402338(+) CCCTGC/GTGCTT 1 -- int16Minor allele frequency- G:0.00NS EA CSA 598
    rs57460051,2
    C,F,H,--11402380(+) TGGCAC/TACTTC 1 -- int15Minor allele frequency- T:0.00NS EA 598
    rs740533561,2
    C,F,--11402468(+) CCTGCC/ACCATA 1 -- int12Minor allele frequency- A:0.50WA CSA 4
    rs57460071,2
    C,F,--11402559(+) GCACTC/TAGCTT 1 -- int16Minor allele frequency- T:0.03NS NA 332
    rs57460081,2
    C,H,--11402628(+) TCTTTC/TCTTGC 1 -- int1 trp35Minor allele frequency- T:0.00NS EA 584
    rs57460091,2
    C,F,H,--11402822(+) NNNNCA/CGTTGG 1 -- int116Minor allele frequency- C:0.04NS EA WA CSA NA 1494
    rs561431241,2
    C,F,--11403070(+) TAAGGC/TGGGGG 1 -- int12Minor allele frequency- T:0.50WA CSA 4
    rs1139041421,2
    --11403137(+) AGGTGG/ACATTT 1 -- int11Minor allele frequency- A:0.50CSA 2
    rs57460111,2
    C,F,H,--11403258(+) GTGAGT/CTGGAG 1 -- int16Minor allele frequency- C:0.01NS EA NA 704
    rs178838581,2
    C,--11403336(+) GGAGTG/AAGCAG 1 -- int15Minor allele frequency- A:0.01NS NA 210
    rs6819061,2
    C,F,H,--11403348(-) TTACCA/Gtggtc 1 -- int110Minor allele frequency- G:0.01NS EA NA CSA 660
    rs57460121,2
    C,F,H,--11403442(+) GTCACC/AGTCCC 1 -- int19Minor allele frequency- A:0.02NS EA NA 684
    rs57460131,2
    H--11403923(+) CCCCTA/GTCATT 1 -- int15Minor allele frequency- G:0.00NS EA 568
    rs57460141,2
    C,F,H,--11404142(+) GGAATT/CGGAAC 1 -- int126Minor allele frequency- C:0.04NS EA NA 2750
    rs57460151,2
    C,F,--11404148(+) GGAACT/GCCACA 1 -- int17Minor allele frequency- G:0.05NS NA WA 376
    rs178802121,2
    C--11404212(+) TGAGCC/TCAGGG 1 -- int12Minor allele frequency- T:0.01NS 92
    rs111218851,2
    C,F,--11404532(+) CTGTTT/CACCCC 1 -- int13Minor allele frequency- C:0.03NA NS 92
    rs57460171,2
    C,F,--11404595(+) GGGGCA/CGGCGG 1 -- int17Minor allele frequency- C:0.05NS NA WA CSA 248
    rs178802131,2
    C--11404739(+) GACTTC/TGGGGA 1 -- int13Minor allele frequency- T:0.01NS NA 94
    rs57460191,2
    C,F,--11404754(+) CGGCAC/TTGCGG 1 -- int12Minor allele frequency- T:0.01NS NA 276
    rs1113786121,2
    --11404776(+) ACTGCG/AGGGAG 1 -- int11Minor allele frequency- A:0.00CSA 1
    rs57460231,2
    H--11405297(+) CCTTGC/TAGTGT 1 -- int15Minor allele frequency- T:0.00NS EA 582
    rs57460241,2
    H--11405315(+) ATCAAC/TCCATT 1 -- int15Minor allele frequency- T:0.00NS EA 584
    rs133067211,2
    H--11405470(+) TCAGAC/ACAAGC 1 -- int14Minor allele frequency- A:0.00NS EA 420
    rs178811991,2
    C,--11405556(+) ACAGGA/CATCTG 1 -- int12Minor allele frequency- C:0.01NS 86
    rs57460291,2
    H--11406552(+) TGAGAC/TTGCTT 1 -- int15Minor allele frequency- T:0.00NS EA 594
    rs178836081,2
    C,F,--11407046(+) CTGGGG/ATAGAA 1 -- int14Minor allele frequency- A:0.03NS NA 80
    rs178829211,2
    C,F,--11407153(+) AGACTC/TGCCCC 1 -- int13Minor allele frequency- T:0.03NS WA 78
    rs178790421,2
    C--11407283(+) GTGTGA/CCAGCC 2 T P mis1 ese34Minor allele frequency- C:0.01NS NA 78
    rs1117723371,2
    F--11407485(+) AAGGCG/CTGGGG 1 -- int12Minor allele frequency- C:0.50CSA 4
    rs562866681,2
    C,--11407704(+) TGGGGG/TACTGG 1 -- int11Minor allele frequency- T:0.50WA 2
    rs57460341,2
    H--11408037(+) TGTCAG/TGAGGT 1 -- int15Minor allele frequency- T:0.00NS EA 532
    rs57460361,2
    C,F,H,--11408442(+) GTAGAG/TGCTGT 1 -- int15Minor allele frequency- T:0.01NS EA 576
    rs57460371,2
    H--11408530(+) TTAGAG/CACAGA 1 -- int15Minor allele frequency- C:0.00NS EA 584
    rs764688151,2
    F,--11408812(+) GTCACC/GTCTAA 1 -- int11Minor allele frequency- G:0.02WA 118
    rs57460381,2
    C,H,--11408879(+) AAATCG/AGATGC 1 -- int15Minor allele frequency- A:0.00NS EA 566
    rs57460391,2
    H--11408882(+) TCGGAT/CGCCTT 1 -- int15Minor allele frequency- C:0.00NS EA 564
    rs57460411,2
    C,F,H,--11409058(+) ACATAC/GGTCTG 1 -- int16Minor allele frequency- G:0.01NS EA WA 682
    rs728649061,2
    C,--11409318(+) TTTTTT/AAAAAG 1 -- int11Minor allele frequency- A:0.50WA 2
    rs2352531,2
    C,F,H,--11409425(+) tggccA/Gtcatg 1 -- int19Minor allele frequency- G:0.01NS EA NA CSA 514
    rs178811051,2
    C,F,--11410044(+) CCGGCG/AAGCGA 1 -- int12Minor allele frequency- A:0.02NS 92
    rs2352521,2
    --11410093(+) ACTGAC/TGGTTG 1 -- int16Minor allele frequency- T:0.02EA NA CSA 60
    rs753621471,2
    F,--11410124(+) AGCAGG/TTGTCT 1 -- int11Minor allele frequency- T:0.03WA 118
    rs178831221,2
    C,F,--11410195(+) CAATCC/GTCTGT 1 -- int15Minor allele frequency- G:0.03NS NA 212
    rs1138565031,2
    C,--11410251(+) TTCCAT/-TTTTT 1 -- int11Minor allele frequency- -:0.00CSA 2
    rs2352511,2
    C,F,A,H,--11410644(+) AGTGCA/GGAAAA 1 -- int111Minor allele frequency- G:0.02NS EA NA CSA WA 854
    rs1709581,2
    F,H,--11410910(+) ccattT/Cttcct 1 -- int18Minor allele frequency- C:0.02NS EA NA CSA WA 510
    rs773153681,2
    F,--11411019(+) GAGGCC/TAGTGG 1 -- int11Minor allele frequency- T:0.02EA 120
    rs1124439071,2
    --11411023(+) CCAGTG/AGAGAG 1 -- int11Minor allele frequency- A:0.50CSA 2
    rs745483591,2
    F,--11411107(+) GTCCAG/CGGCAT 1 -- int11Minor allele frequency- C:0.02WA 118
    rs178818951,2
    C,--11411296(+) CCGGGC/TGTGGT 1 -- int12Minor allele frequency- T:0.02NS 74
    rs178858681,2
    C,F,--11411309(+) CGGGCG/ACCCGT 1 -- int12Minor allele frequency- A:0.03NS 76
    rs178816021,2
    C,F,--11411357(+) GAACCC/TGGGAG 1 -- int12Minor allele frequency- T:0.03NS 76
    rs2352501,2
    C,F,A,--11411428(+) actccA/Gtctca 1 -- int16Minor allele frequency- G:0.22NA NS CSA 79
    rs178839761,2
    C,F,--11411541(+) TTTATC/TGGGTG 1 -- int14Minor allele frequency- T:0.02NS NA 88
    rs716470331,2
    C--11411910(+) TGGCTT/CTGCTG 1 -- int12Minor allele frequency- C:0.25NA 4
    rs18897931,2
    --11412458(-) AGGTCA/GCGGCC 1 -- int11Minor allele frequency- G:0.00MN 184
    rs2352481,2
    C,F,--11412637(+) CCACCT/CGGGCG 1 -- int113Minor allele frequency- C:0.02NS NA WA CSA 880
    rs803408951,2
    --11413438(+) CGTGAC/GCTTGG 1 -- int11Minor allele frequency- G:0.01NA 120
    rs753698121,2
    F,--11413488(+) GCAAGG/CATAAC 1 -- int11Minor allele frequency- C:0.03NA 120
    rs178813791,2
    C,F,--11413601(+) ATTCTA/GCGGGA 1 -- int18Minor allele frequency- G:0.01NS 742
    rs178802521,2
    C,F,--11413644(+) GTGGGC/TGGACT 1 -- int13Minor allele frequency- T:0.05NS CSA 96
    rs178805181,2
    C,F,--11413663(+) AGAGGC/TTGAGG 1 -- int15Minor allele frequency- T:0.02NS NA 218
    rs1135215321,2
    --11413741(+) TGCACG/ACTTTC 1 -- int11Minor allele frequency- A:0.50CSA 2
    rs57460461,2
    H--11413944(+) CCGCAA/GATTAT 1 -- int15Minor allele frequency- G:0.00NS EA 558
    rs57460481,2
    C,F,--11414131(+) GAGACG/AGGGTT 1 -- int11Minor allele frequency- A:0.01NS 162
    rs121346941,2
    C--11414463(+) gtggtC/Ttcagc 1 -- int11Minor allele frequency- T:0.50NA 2
    rs178812071,2
    C,F,--11414877(+) GCACTT/CGTGTG 1 -- int14Minor allele frequency- C:0.03NS NA 74
    rs178856701,2
    C,F,--11415054(+) CCTCAT/CAGGAC 1 -- int14Minor allele frequency- C:0.03NS NA WA 210
    rs57460501,2
    H--11415106(+) AACCAC/TGGAGA 1 -- int15Minor allele frequency- T:0.00NS EA 588
    rs178834321,2
    C--11415289(+) CCAGCC/GTCACT 2 P R mis1 ese34Minor allele frequency- G:0.01NS NA 96
    rs1119417141,2
    --11415823(+) CCTTTG/CACAGG 1 -- int11Minor allele frequency- C:0.50CSA 2
    rs1133808081,2
    --11415874(+) CCCACG/ACCAGG 1 -- int11Minor allele frequency- A:0.50CSA 2
    rs57460551,2
    C,F,--11415940(+) CAACAC/TGGCCC 1 -- int16Minor allele frequency- T:0.02NS NA CSA 272
    rs2352241,2
    C,F,--11416179(+) gctgtC/Tgggct 1 -- int16Minor allele frequency- T:0.03NA NS WA CSA 100
    rs178843781,2
    C,F,--11416781(+) GCCACC/ACCTGC 1 -- int14Minor allele frequency- A:0.05NS NA 216
    rs178842131,2
    C,F,--11416809(+) ACCTGC/TCCCCA 1 -- int117Minor allele frequency- T:0.15NS NA CSA WA EA 2067
    rs178839331,2
    C,F,--11416850(+) TGTCTG/ACCCCA 1 -- int13Minor allele frequency- A:0.07NS CSA 96
    rs2352231,2
    H--11416998(+) AGTGCG/ACTCCA 1 -- int16Minor allele frequency- A:0.00NS EA NA 414
    rs2352221,2
    C--11417059(+) tttttA/Taatgg 1 -- int12Minor allele frequency- T:0.25NA WA 4
    rs2352201,2
    C,F,A,--11417183(+) gtaggC/Tgggat 1 -- int112Minor allele frequency- G:0.01EA NA NS WA CSA 465
    rs178860431,2
    C,F,--11417487(+) CCGTGT/CCCCTG 1 -- int15Minor allele frequency- C:0.04NS NA 174
    rs178845501,2
    C,F,--11417586(+) GTCCCC/GCATCC 1 -- int14Minor allele frequency- G:0.04NS NA 182
    rs178865801,2
    C,F,--11417725(+) TGCTTG/AGGGCT 1 -- int14Minor allele frequency- A:0.03NS NA 202
    rs2352181,2
    C,A,--11418135(+) caccaC/AcaACA 1 -- int12Minor allele frequency- A:0.00NA 4
    rs757016761,2
    F,--11418340(+) AAAAAA/GATAAA 1 -- int11Minor allele frequency- G:0.04NA 120
    rs743893281,2
    F,--11418643(+) TGTGGC/TTGGAA 1 -- int11Minor allele frequency- T:0.02EA 120
    rs178838821,2
    C,--11418839(+) AGCCAG/AGACAG 1 -- int13Minor allele frequency- A:0.01NS NA 94
    rs20770001,2
    C,F,--11419717(-) TAGTGA/GGACCC 1 -- int16Minor allele frequency- G:0.01NS NA WA 340
    rs57460611,2
    C,F,H,--11419855(+) ATGCTA/GTTCTT 1 -- int119Minor allele frequency- G:0.12NS EA NA WA CSA 1571
    rs57460631,2
    C,F,--11419920(+) ACACAG/TCAGAG 1 -- int12Minor allele frequency- T:0.01NS NA 260
    rs133067151,2
    C,F,--11419946(+) ggtctC/Tggctc 1 -- int11Minor allele frequency- T:0.06WA 118
    rs2008734171,2
    C--11420479(+) TGCCCC/TCCACA 1 -- ut310--------
    rs50307921,2
    C,--11420534(+) AGTTGT/GGGAAA 1 -- ut312Minor allele frequency- G:0.05NA 122
    rs57460661,2
    C,F,--11420794(+) GAGGGA/GTGCTG 1 -- ut31 ese3 trp33Minor allele frequency- G:0.01NS 242
    rs57460671,2
    C--11420813(+) ACCCAT/CGAAGA 1 -- ut31 ese33Minor allele frequency- C:0.01NS NA 152
    rs57460681,2
    C,F,H,--11420819(+) GAAGAC/GAGGAC 1 -- ut31 ese319Minor allele frequency- G:0.04NS EA NA WA 1906
    rs178807921,2
    C,F--11420862(+) GGTCCT/CGGGGC 1 -- ut313Minor allele frequency- C:0.02NS NA 96
    rs178814451,2
    C,F,H--11420915(+) CTTCAA/GGTTAG 1 -- ut31 ese35Minor allele frequency- G:0.18NS NA 382
    rs178803321,2
    C,--11420970(+) TCACGC/TCTATG 1 -- ut31 ese32Minor allele frequency- T:0.01NS 94
    rs57460691,2
    C,--11421001(+) TGAGGC/TGGGTG 1 -- ut31 ese31Minor allele frequency- T:0.01NS 166
    rs57460711,2
    C,F--11421292(+) GTGAA-/TGAA  
            
    AGTCA
    1 -- ut311Minor allele frequency- TGAA:0.08NS 152
    rs66685611,2
    H--11421422(+) GCCAAC/TGACAA 1 -- ut31 ese34Minor allele frequency- T:0.00NS EA 416
    rs617748911,2
    --11421474(+) TTGCAT/CCCTCC 1 -- ut311Minor allele frequency- C:0.00NA 2
    rs1134011571,2
    --11421490(+) CACTCC/TGGTGT 1 -- ut311Minor allele frequency- T:0.50CSA 2
    rs57460721,2
    C,H,--11421519(+) CCTTCC/TTTGCT 1 -- ut3