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Aliases for TNFRSF17 Gene

Aliases for TNFRSF17 Gene

  • Tumor Necrosis Factor Receptor Superfamily Member 17 2 3 5
  • Tumor Necrosis Factor Receptor Superfamily, Member 17 2 3
  • B-Cell Maturation Protein 3 4
  • BCMA 3 4
  • BCM 3 4
  • B Cell Maturation Antigen 3
  • B-Cell Maturation Factor 3
  • CD269 Antigen 4
  • TNFRSF13A 3
  • CD269 3

External Ids for TNFRSF17 Gene

Previous HGNC Symbols for TNFRSF17 Gene

  • BCMA

Previous GeneCards Identifiers for TNFRSF17 Gene

  • GC16P011842
  • GC16P012211
  • GC16P012025
  • GC16P011966

Summaries for TNFRSF17 Gene

Entrez Gene Summary for TNFRSF17 Gene

  • The protein encoded by this gene is a member of the TNF-receptor superfamily. This receptor is preferentially expressed in mature B lymphocytes, and may be important for B cell development and autoimmune response. This receptor has been shown to specifically bind to the tumor necrosis factor (ligand) superfamily, member 13b (TNFSF13B/TALL-1/BAFF), and to lead to NF-kappaB and MAPK8/JNK activation. This receptor also binds to various TRAF family members, and thus may transduce signals for cell survival and proliferation. [provided by RefSeq, Jul 2008]

GeneCards Summary for TNFRSF17 Gene

TNFRSF17 (Tumor Necrosis Factor Receptor Superfamily Member 17) is a Protein Coding gene. Diseases associated with TNFRSF17 include Common Variable Immunodeficiency and Chronic Lymphocytic Leukemia. Among its related pathways are TNF Signaling (sino) and ERK Signaling. GO annotations related to this gene include receptor activity.

UniProtKB/Swiss-Prot for TNFRSF17 Gene

  • Receptor for TNFSF13B/BLyS/BAFF and TNFSF13/APRIL. Promotes B-cell survival and plays a role in the regulation of humoral immunity. Activates NF-kappa-B and JNK.

Gene Wiki entry for TNFRSF17 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TNFRSF17 Gene

Genomics for TNFRSF17 Gene

Regulatory Elements for TNFRSF17 Gene

Enhancers for TNFRSF17 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around TNFRSF17 on UCSC Golden Path with GeneCards custom track

Promoters for TNFRSF17 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around TNFRSF17 on UCSC Golden Path with GeneCards custom track

Genomic Location for TNFRSF17 Gene

Chromosome:
16
Start:
11,965,107 bp from pter
End:
11,968,068 bp from pter
Size:
2,962 bases
Orientation:
Plus strand

Genomic View for TNFRSF17 Gene

Genes around TNFRSF17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TNFRSF17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TNFRSF17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TNFRSF17 Gene

Proteins for TNFRSF17 Gene

  • Protein details for TNFRSF17 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q02223-TNR17_HUMAN
    Recommended name:
    Tumor necrosis factor receptor superfamily member 17
    Protein Accession:
    Q02223
    Secondary Accessions:
    • Q2TQ40

    Protein attributes for TNFRSF17 Gene

    Size:
    184 amino acids
    Molecular mass:
    20165 Da
    Quaternary structure:
    • Associates with TRAF1, TRAF2, TRAF3, TRAF5 and TRAF6.

    Three dimensional structures from OCA and Proteopedia for TNFRSF17 Gene

    Alternative splice isoforms for TNFRSF17 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TNFRSF17 Gene

Proteomics data for TNFRSF17 Gene at MOPED

Post-translational modifications for TNFRSF17 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TNFRSF17 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

  • R&D Systems Antibodies for TNFRSF17 (BCMA/TNFRSF17)
  • Abcam antibodies for BCMA

No data available for DME Specific Peptides for TNFRSF17 Gene

Domains & Families for TNFRSF17 Gene

Protein Domains for TNFRSF17 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q02223

UniProtKB/Swiss-Prot:

TNR17_HUMAN :
  • Contains 1 TNFR-Cys repeat.
Similarity:
  • Contains 1 TNFR-Cys repeat.
genes like me logo Genes that share domains with TNFRSF17: view

Function for TNFRSF17 Gene

Molecular function for TNFRSF17 Gene

GENATLAS Biochemistry:
tumor necrosis factor receptor superfamily,member 17,B cell maturation gene,expressed in terminal stages of B cell differentiation,fused with IL2 in t(4;16)(q26;p13) translocation
UniProtKB/Swiss-Prot Function:
Receptor for TNFSF13B/BLyS/BAFF and TNFSF13/APRIL. Promotes B-cell survival and plays a role in the regulation of humoral immunity. Activates NF-kappa-B and JNK.
genes like me logo Genes that share phenotypes with TNFRSF17: view

Animal Models for TNFRSF17 Gene

MGI Knock Outs for TNFRSF17:

Animal Model Products

CRISPR Products

miRNA for TNFRSF17 Gene

miRTarBase miRNAs that target TNFRSF17

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for TNFRSF17 Gene

Localization for TNFRSF17 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TNFRSF17 Gene

Cell membrane; Single-pass type III membrane protein. Endomembrane system; Single-pass type III membrane protein. Note=Perinuclear Golgi-like structures.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TNFRSF17 Gene COMPARTMENTS Subcellular localization image for TNFRSF17 gene
Compartment Confidence
plasma membrane 5
cytosol 3
extracellular 2
endoplasmic reticulum 1
mitochondrion 1
nucleus 1

No data available for Gene Ontology (GO) - Cellular Components for TNFRSF17 Gene

Pathways & Interactions for TNFRSF17 Gene

genes like me logo Genes that share pathways with TNFRSF17: view

SIGNOR curated interactions for TNFRSF17 Gene

Activates:
Is activated by:

Gene Ontology (GO) - Biological Process for TNFRSF17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002260 lymphocyte homeostasis IEA --
GO:0007165 signal transduction TAS 10908663
GO:0007275 multicellular organism development TAS 8165126
genes like me logo Genes that share ontologies with TNFRSF17: view

Drugs & Compounds for TNFRSF17 Gene

(4) Drugs for TNFRSF17 Gene - From: DGIdb, IUPHAR, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
APRIL Pharma 0
BAFF Pharma 0
LYMPHORAD Pharma 0

(2) Additional Compounds for TNFRSF17 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with TNFRSF17: view

Transcripts for TNFRSF17 Gene

mRNA/cDNA for TNFRSF17 Gene

(1) REFSEQ mRNAs :
(8) Additional mRNA sequences :
(21) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TNFRSF17 Gene

Tumor necrosis factor receptor superfamily, member 17:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TNFRSF17 Gene

No ASD Table

Relevant External Links for TNFRSF17 Gene

GeneLoc Exon Structure for
TNFRSF17
ECgene alternative splicing isoforms for
TNFRSF17

Expression for TNFRSF17 Gene

mRNA expression in normal human tissues for TNFRSF17 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TNFRSF17 Gene

This gene is overexpressed in Spleen (x5.0).

Protein differential expression in normal tissues from HIPED for TNFRSF17 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for TNFRSF17 Gene



SOURCE GeneReport for Unigene cluster for TNFRSF17 Gene Hs.2556

mRNA Expression by UniProt/SwissProt for TNFRSF17 Gene

Q02223-TNR17_HUMAN
Tissue specificity: Expressed in mature B-cells, but not in T-cells or monocytes.
genes like me logo Genes that share expression patterns with TNFRSF17: view

Protein tissue co-expression partners for TNFRSF17 Gene

Primer Products

Orthologs for TNFRSF17 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TNFRSF17 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia TNFRSF17 35
  • 79.81 (n)
  • 72 (a)
dog
(Canis familiaris)
Mammalia TNFRSF17 35
  • 83.53 (n)
  • 77.33 (a)
TNFRSF17 36
  • 72 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tnfrsf17 35
  • 75.05 (n)
  • 65.92 (a)
Tnfrsf17 16
Tnfrsf17 36
  • 64 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia TNFRSF17 35
  • 99.82 (n)
  • 99.46 (a)
TNFRSF17 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tnfrsf17 35
  • 74.86 (n)
  • 64.25 (a)
oppossum
(Monodelphis domestica)
Mammalia TNFRSF17 36
  • 46 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TNFRSF17 36
  • 45 (a)
OneToOne
Species with no ortholog for TNFRSF17:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TNFRSF17 Gene

ENSEMBL:
Gene Tree for TNFRSF17 (if available)
TreeFam:
Gene Tree for TNFRSF17 (if available)

Paralogs for TNFRSF17 Gene

genes like me logo Genes that share paralogs with TNFRSF17: view

No data available for Paralogs for TNFRSF17 Gene

Variants for TNFRSF17 Gene

Sequence variations from dbSNP and Humsavar for TNFRSF17 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs150352299 - 11,967,749(+) AAGGC(A/G)CAACC reference, missense
rs11570146 - 11,966,225(+) GAATG(C/T)GATTC reference, missense
rs11570147 - 11,966,257(+) GCTTA(A/G)TAATT reference, missense
rs11570148 - 11,966,287(+) TAATG(C/G/T)TTTTG reference, missense
rs373496 - 11,966,306(-) CAGAG(C/T)TTATC reference, missense

Structural Variations from Database of Genomic Variants (DGV) for TNFRSF17 Gene

Variant ID Type Subtype PubMed ID
nsv905347 CNV Gain 21882294

Variation tolerance for TNFRSF17 Gene

Residual Variation Intolerance Score: 75.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.45; 28.39% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for TNFRSF17 Gene

Disorders for TNFRSF17 Gene

MalaCards: The human disease database

(3) MalaCards diseases for TNFRSF17 Gene - From: DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
common variable immunodeficiency
  • acquired agammaglobulinemia
chronic lymphocytic leukemia
  • cll
blue cone monochromacy
  • blue cone monochromatism
- elite association - COSMIC cancer census association via MalaCards

UniProtKB/Swiss-Prot

TNR17_HUMAN
  • Note=A chromosomal aberration involving TNFRSF17 is found in a form of T-cell acute lymphoblastic leukemia (T-ALL). Translocation t(4;16)(q26;p13) with IL2. {ECO:0000269 PubMed:1396583}.

Relevant External Links for TNFRSF17

Genetic Association Database (GAD)
TNFRSF17
Human Genome Epidemiology (HuGE) Navigator
TNFRSF17
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TNFRSF17
genes like me logo Genes that share disorders with TNFRSF17: view

No data available for Genatlas for TNFRSF17 Gene

Publications for TNFRSF17 Gene

  1. The BCMA gene, preferentially expressed during B lymphoid maturation, is bidirectionally transcribed. (PMID: 8165126) Laabi Y. … Tsapis A. (Nucleic Acids Res. 1994) 2 3 4 23 67
  2. Gut-associated lymphoid tissue contains the molecular machinery to support T-cell-dependent and T-cell-independent class switch recombination. (PMID: 19741596) Barone F. … Spencer J. (Mucosal Immunol 2009) 3 23
  3. Identification of new splice variants of the genes BAFF and BCMA. (PMID: 17825416) Smirnova A.S. … Gerbase-DeLima M. (Mol. Immunol. 2008) 3 23
  4. Hodgkin lymphoma cells express TACI and BCMA receptors and generate survival and proliferation signals in response to BAFF and APRIL. (PMID: 16960154) Chiu A. … Cerutti A. (Blood 2007) 3 23
  5. Rheumatoid arthritis fibroblast-like synoviocytes express BCMA and are stimulated by APRIL. (PMID: 17968879) Nagatani K. … Mimori A. (Arthritis Rheum. 2007) 3 23

Products for TNFRSF17 Gene

Sources for TNFRSF17 Gene

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