Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

TNFRSF13C Gene

protein-coding   GIFtS: 60
GCID: GC22M042321

tumor necrosis factor receptor superfamily, member 13C

 Explore 41 diseases affiliated with
TNFRSF13C via our new
 Human Malady Compendium 
Biological research products
for TNFRSF13C
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Tumor Necrosis Factor Receptor Superfamily, Member 13C1 2     CVID42 5
BAFFR1 2 3 5     BROMIX2
CD2681 2     B Cell-Activating Factor Receptor2
BAFF-R2 3     Prolixin1
B-Cell-Activating Factor Receptor2 3     Tumor Necrosis Factor Receptor Superfamily Member 13C2
BAFF Receptor2 3     BR33
BLyS Receptor 32 3     CD268 Antigen3

External Ids:    HGNC: 177551   Entrez Gene: 1156502   Ensembl: ENSG000001599587   OMIM: 6062695   UniProtKB: Q96RJ33   

Export aliases for TNFRSF13C gene to outside databases

Previous GC identifers: GC22M038935 GC22M040564 GC22M040645 GC22M025286


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for TNFRSF13C:
B cell-activating factor (BAFF) enhances B-cell survival in vitro and is a regulator of the peripheral B-cell
population. Overexpression of Baff in mice results in mature B-cell hyperplasia and symptoms of systemic lupus
erythematosus (SLE). Also, some SLE patients have increased levels of BAFF in serum. Therefore, it has been proposed
that abnormally high levels of BAFF may contribute to the pathogenesis of autoimmune diseases by enhancing the
survival of autoreactive B cells. The protein encoded by this gene is a receptor for BAFF and is a type III
transmembrane protein containing a single extracellular cysteine-rich domain. It is thought that this receptor is the
principal receptor required for BAFF-mediated mature B-cell survival. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: TR13C_HUMAN, Q96RJ3
Function: B-cell receptor specific for TNFSF13B/TALL1/BAFF/BLyS. Promotes the survival of mature B-cells and the B-cell
response

Gene Wiki entry for TNFRSF13C


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000022.10  NC_018933.1  NT_011520.12  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the TNFRSF13C gene promoter:
         USF1   p53   Sp1   AP-1   USF-1   ATF-2   SEF-1 (1)   c-Jun   E47   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTNFRSF13C promoter sequence
   Search SABiosciences Chromatin IP Primers for TNFRSF13C

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TNFRSF13C


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 22q13.1-q13.31   Ensembl cytogenetic band:  22q13.2   HGNC cytogenetic band: 22q13.1-q13.3

TNFRSF13C Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TNFRSF13C gene location

GeneLoc information about chromosome 22         GeneLoc Exon Structure

GeneLoc location for GC22M042321:  view genomic region     (about GC identifiers)

Start:
42,321,036 bp from pter      End:
42,322,822 bp from pter
Size:
1,787 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: TR13C_HUMAN, Q96RJ3 (See protein sequence)
Recommended Name: Tumor necrosis factor receptor superfamily member 13C  
Size: 184 amino acids; 18864 Da
Subcellular location: Membrane; Single-pass type III membrane protein (Probable)
5 PDB 3D structures from and Proteopedia for TNFRSF13C:
1MPV (3D)        1OQE (3D)        1OSX (3D)        1P0T (3D)        2HFG (3D)    
Alternative splicing: 2 isoforms:  Q96RJ3-1   Q96RJ3-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for TNFRSF13C: NX_Q96RJ3

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q96RJ3

  • TNFRSF13C Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_443177.1  
    ENSEMBL proteins: 
     ENSP00000291232  

    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    R&D Systems Recombinant & Natural Proteins for TNFRSF13C (BAFF R/TNFRSF13C)
    Enzo Life Sciences proteins for TNFRSF13C
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    OriGene Protein Over-expression Lysate: TNFRSF13C
    OriGene Custom Protein Services for TNFRSF13C 
    GenScript Purified and Recombinant Proteins for TNFRSF13C
    Novus Biologicals TNFRSF13C Proteins
    Novus Biologicals TNFRSF13C Lysates
    Browse Sino Biological Recombinant Proteins
    ProSpec Recombinant Protein for TNFRSF13C
    Uscn Proteins for TNFRSF13C

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0009897external side of plasma membrane IEA--
    GO:0016021integral to membrane IEA--


    TNFRSF13C for ontologies           About GeneDecksing



    TNFRSF13C Antibody Products: 
    EMD Millipore Mono- and Polyclonal Antibodies for the study of TNFRSF13C
    R&D Systems Antibodies for TNFRSF13C (BAFF R/TNFRSF13C)
    OriGene Antibodies: TNFRSF13C
    OriGene Custom Antibody Services for TNFRSF13C 
    GenScript Custom Superior Antibodies Services for TNFRSF13C
    Novus Biologicals TNFRSF13C Antibodies
    Search for Antibodies for TNFRSF13C at Abcam  
    Uscn Antibodies for TNFRSF13C
    ThermoFisher Antibodies for TNFRSF13C

    Assay Products for TNFRSF13C: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for TNFRSF13C
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for TNFRSF13C


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    TNFRSF13C for domains           About GeneDecksing

    2 InterPro domains/families:
     IPR022338 TNFR_13C
     IPR015336 TNFR_13C_TALL-1-bd

    Graphical View of Domain Structure for InterPro Entry Q96RJ3

    ProtoNet protein and cluster: Q96RJ3

    1 Blocks protein family: IPB001368 TNFR/CD27/30/40/95 cysteine-rich region

    UniProtKB/Swiss-Prot: TR13C_HUMAN, Q96RJ3
    Similarity: Contains 1 TNFR-Cys repeat


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: TR13C_HUMAN, Q96RJ3
    Function: B-cell receptor specific for TNFSF13B/TALL1/BAFF/BLyS. Promotes the survival of mature B-cells and the B-cell
    response

    miRNA
    Products:
        
    Browse 3'-UTR reporter clones for miRNA target validation
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat TNFRSF13C
    1 QIAGEN miScript miRNA Assays for microRNA that regulate TNFRSF13C:
    hsa-miR-142-3p
    SwitchGear 3'UTR luciferase reporter plasmidTNFRSF13C 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for TNFRSF13C (see all 4)
    OriGene shRNA RFP: TNFRSF13C
    OriGene siRNA: TNFRSF13C
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TNFRSF13C

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for TNFRSF13C

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TNFRSF13C (see all 2)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TNFRSF13C
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: TNFRSF13C (NM_052945)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for TNFRSF13C
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TNFRSF13C 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for TNFRSF13C
    Search LifeMap BioReagents cell lines for TNFRSF13C

    In Situ Assay
    Products:
       

     
    Search Advanced Cell Diagnostics for RNAscope RNA in situ hybridization assays for TNFRSF13C

    Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004872receptor activity ----


    TNFRSF13C for ontologies           About GeneDecksing


    Animal Models:
         Mouse knock-outs for TNFRSF13C: Tnfrsf13ctm1Msc Tnfrsf13ctm1Mass
         4 MGI mutant phenotypes (inferred from 4 alleles(MGI details for Tnfrsf13c):
     cellular  hematopoietic system  homeostasis/metabolism  immune system 

    TNFRSF13C for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/10 super-pathways (see all 10About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1PEDF Induced Signaling
    STAT3 Pathway0.47
    Glucocorticoid Receptor Signaling0.27
    PGC1Alpha Pathway0.33
    Cytokine-cytokine receptor interaction0.26
    2TGF-Beta Pathway
    TGF-Beta Pathway1.00
    JNK Pathway0.50
    JAK-STAT Pathway0.57
    3Akt Signaling
    Akt Signaling1.00
    Tec Kinases Signaling0.55
    p38 Signaling0.60
    4BAFF in B-Cell Signaling
    BAFF in B-Cell Signaling1.00
    Apoptosis and survival APRIL and BAFF signaling0.39
    Apoptosis and survival_APRIL and BAFF signaling0.39
    5TRAF Pathway
    TNF Superfamily Pathway0.42
    TNF Superfamily - Human Ligand-Receptor Interactions & their Associated Functions0.08

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    1 EMD Millipore Pathway for TNFRSF13C
        Apoptosis and survival APRIL and BAFF signaling

    1 R&D Systems Pathway for TNFRSF13C
        TNF Superfamily - Human Ligand-Receptor Interactions & their Associated Functions

    5/14 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for TNFRSF13C (see all 14)
        STAT3 Pathway
    Molecular Mechanisms of Cancer
    Antioxidant Action of Vitamin-C
    Glucocorticoid Receptor Signaling
    JAK-STAT Pathway

    1 GeneGo (Thomson Reuters) Pathway for TNFRSF13C
        Apoptosis and survival APRIL and BAFF signaling


    3         Kegg Pathways  (Kegg details for TNFRSF13C):
        Cytokine-cytokine receptor interaction
    Intestinal immune network for IgA production
    Primary immunodeficiency


    TNFRSF13C for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for TNFRSF13C

    STRING Interaction Network Preview (showing 4 interactants - click image to see more details)

    5/6 Interacting proteins for TNFRSF13C (Q96RJ33 ENSP000002912324) via UniProtKB, MINT, STRING, and/or I2D (see all 6)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    TNFSF13BQ9Y2753, ENSP000003650484I2D: score=3 STRING: ENSP00000365048
    TRAF3Q131143, ENSP000003324684I2D: score=2 STRING: ENSP00000332468
    TRAF1Q130773I2D: score=1 
    TRAF3IP2O437343I2D: score=1 
    IGHG1ENSP000003749904STRING: ENSP00000374990
    About this table

    Gene Ontology (GO): 5/8 biological process terms (GO ID links to tree view) (see all 8):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001782B cell homeostasis IEA--
    GO:0002636positive regulation of germinal center formation IEA--
    GO:0030890positive regulation of B cell proliferation IEA--
    GO:0031295T cell costimulation IEA--
    GO:0031296B cell costimulation IEA--


    TNFRSF13C for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    TNFRSF13C for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for TNFRSF13C
    3 Novoseek chemical compound relationships for TNFRSF13C gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    bcma 98.6 111 15697217 (5), 20097906 (4), 11827482 (3), 12721620 (3) (see all 55)
    blys 96.8 88 17069785 (3), 18434450 (2), 14512299 (2), 16160919 (2) (see all 29)
    calcium 1.14 10 17444957 (1), 14978135 (1), 15908449 (1), 17267661 (1) (see all 7)

    Search CenterWatch for drugs/clinical trials and news about TNFRSF13C / TR13C 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for TNFRSF13C gene: 
    NM_052945.3  

    Unigene Cluster for TNFRSF13C:

    Tumor necrosis factor receptor superfamily, member 13C
    Hs.344088  [show with all ESTs]
    Unigene Representative Sequence: NM_052945
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000291232(uc003bbl.2 uc010gyp.1)

    miRNA
    Products:
         
    Browse 3'-UTR reporter clones for miRNA target validation
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat TNFRSF13C
    1 QIAGEN miScript miRNA Assays for microRNA that regulate TNFRSF13C:
    hsa-miR-142-3p
    SwitchGear 3'UTR luciferase reporter plasmidTNFRSF13C 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for TNFRSF13C (see all 4)
    OriGene shRNA RFP: TNFRSF13C
    OriGene siRNA: TNFRSF13C
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TNFRSF13C
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TNFRSF13C (see all 2)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TNFRSF13C
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: TNFRSF13C (NM_052945)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for TNFRSF13C
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TNFRSF13C 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for TNFRSF13C
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat TNFRSF13C
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TNFRSF13C
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TNFRSF13C

    Additional cDNA sequence: 

    AF373846.1 BC105123.1 BC112030.1 

    1 DOTS entry:

    DT.75157341 

    6 AceView cDNA sequences:

    AW236483 NM_052945 AX772914 AI250289 AF373846 AX800072 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    TNFRSF13C expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GAGTTTGGTG

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See TNFRSF13C Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for TNFRSF13C

    SOURCE GeneReport for Unigene cluster: Hs.344088

    UniProtKB/Swiss-Prot: TR13C_HUMAN, Q96RJ3
    Tissue specificity: Highly expressed in spleen and lymph node, and in resting B-cells. Detected at lower levels in
    activated B-cells, resting CD4+ T-cells, in thymus and peripheral blood leukocytes

        SABiosciences Expression via Pathway-Focused PCR Arrays including TNFRSF13C: 
              TNF Ligands & Receptors in human mouse rat
              T-cell & B-cell Activation in human mouse rat

    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for TNFRSF13C
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat TNFRSF13C
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TNFRSF13C
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TNFRSF13C
    In Situ
    Assay Products:
     

     
    Search Advanced Cell Diagnostics for RNAscope RNA in situ hybridization assays for TNFRSF13C

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for TNFRSF13C gene from 2/7 species (see all 7)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Tnfrsf13c1 , 5 tumor necrosis factor receptor superfamily, member more1, 5 69.9(n)1
    61.21(a)1
      15 (38.56 cM)5
    720491  NM_028075.21  NP_082351.11 
     822217445 
    chicken
    (Gallus gallus)
    Aves TNFRSF13C6
    tumor necrosis factor receptor superfamily, member...
    28(a)
    1 ↔ 1
    1(51363876-51365483)


    ENSEMBL Gene Tree for TNFRSF13C (if available)
    TreeFam Gene Tree for TNFRSF13C (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/67 NCBI SNPs in TNFRSF13C are shown (see all 67    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 22 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs60025431,2
    C,--42320547(+) TCCCAC/GCTACT 2 -- us2k1 ds50014Minor allele frequency- G:0.20NA WA EA 360
    rs582648021,2
    F,--42320603(+) GCTGGG/CGACCC 2 -- ds5001 us2k11Minor allele frequency- C:0.08WA 118
    rs1500438801,2
    --42320612(+) CCATCA/GTTGCA 2 -- ds5001 us2k10--------
    rs96078581,2
    C,F,A,H--42320649(+) CCTGTC/TTCAAA 2 -- ds5001 us2k14Minor allele frequency- T:0.11NS NA 642
    rs581722911,2
    --42320740(+) ATCACA/GAGGTC 2 -- ds5001 us2k10--------
    rs1426651251,2
    --42320789(+) CGTCTA/CTACTA 2 -- us2k1 ds50010--------
    rs1446175291,2
    --42320849(+) TATTCA/GGGAGG 2 -- ds5001 us2k10--------
    rs60025441,2
    --42320853(+) cgggaA/Ggctga 2 -- ds5001 us2k10--------
    rs1912361271,2
    --42321000(+) CAAAAA/CACCAC 2 -- us2k1 ds50010--------
    rs72901341,2
    C,F,A,H,--42321251(+) TGCAGA/GGTTAG 2 -- us2k1 ut31 ese326Minor allele frequency- G:0.47NA EA NS WA CSA 2708

    HapMap Linkage Disequilibrium report for TNFRSF13C (42321036 - 42322822 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for TNFRSF13C: --
    Human Gene Mutation Database (HGMD): TNFRSF13C

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TNFRSF13C
    DNA2.0 Custom Variant and Variant Library Synthesis for TNFRSF13C

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    TNFRSF13C for disorders           About GeneDecksing

    OMIM gene information: 606269   
    OMIM disorders: 613494  
    UniProtKB/Swiss-Prot: TR13C_HUMAN, Q96RJ3
  • Defects in TNFRSF13C are the cause of immunodeficiency common variable type 4 (CVID4) [MIM:613494]; also
  • called antibody deficiency due to BAFFR defect. CVID4 is a primary immunodeficiency characterized by antibody
    deficiency, hypogammaglobulinemia, recurrent bacterial infections and an inability to mount an antibody response to
    antigen. The defect results from a failure of B-cell differentiation and impaired secretion of immunoglobulins; the
    numbers of circulating B-cells is usually in the normal range, but can be low

    20/41 diseases for TNFRSF13C (see all 41):    About MalaCards
    systemic lupus erythematosus    lupus erythematosus    b-cell non-hodgkin lymphoma    common variable immunodeficiency
    diffuse large b-cell lymphoma    non-hodgkin lymphoma    central nervous system lymphoma    graft versus host disease
    b-cell lymphomas    waldenstrom macroglobulinemia    primary biliary cirrhosis    myasthenia gravis
    hodgkin's lymphoma    macroglobulinemia    acute lymphoblastic leukemia    rheumatoid arthritis
    b cell deficiency    chronic lymphocytic leukemia    multiple sclerosis    lymphoblastic leukemia

    1 disease from the University of Copenhagen DISEASES database for TNFRSF13C:
    Common variable immunodeficiency

    10/15 Novoseek disease relationships for TNFRSF13C gene (see all 15)    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    antibody deficiency syndrome 81.1 1 19666484 (1)
    common variable immunodeficiency 73.3 3 16160919 (2), 16264328 (1)
    autoimmune diseases 66.6 5 16226112 (1), 19258594 (1), 17185325 (1), 16187941 (1) (see all 5)
    necrosis 61.5 18 16264328 (2), 18064389 (1), 18775026 (1), 15908449 (1) (see all 14)
    lupus erythematosus systemic 60.8 2 17185325 (1), 20097906 (1)
    lymphoma b-cell 47.9 10 19207947 (3)
    autoimmunity 47 1 15585864 (1)
    lymphoma 43.7 4 15642740 (1), 19207947 (1), 11747837 (1)
    lymphoma follicular 43.2 2 19207947 (1)
    tumors 40.9 14 18064389 (1), 18775026 (1), 19291294 (1), 15908449 (1) (see all 12)

    GeneTests: TNFRSF13C
    Common Variable Immune Deficiency

    Genetic Association Database (GAD): TNFRSF13C
    Human Genome Epidemiology (HuGE) Navigator: TNFRSF13C (7 documents)

    Export disorders for TNFRSF13C gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for TNFRSF13C gene, integrated from 9 sources (see all 151):
    (articles sorted by number of sources associating them with TNFRSF13C)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Mutational analysis of human BAFF receptor TNFRSF13C (BAFF-R) in patients with common variable immunodeficiency. (PubMed id 16160919)1, 2, 4, 9 Losi C.G....Plebani A. (2005)
    2. BAFF-R, a newly identified TNF receptor that specifically interacts with BAFF. (PubMed id 11509692)1, 2, 3 Thompson J.S....Ambrose C. (2001)
    3. BAFF/BLyS receptor 3 comprises a minimal TNF receptor-like module that encodes a highly focused ligand-binding site. (PubMed id 12755599)1, 2, 9 Gordon N.C....Starovasnik M.A. (2003)
    4. Crystal structure of the BAFF-BAFF-R complex and its implications for receptor activation. (PubMed id 12715002)1, 2, 9 Kim H.M.... Lee J.-O. (2003)
    5. Ligand-receptor binding revealed by the TNF family member TALL-1. (PubMed id 12721620)1, 2, 9 Liu Y.... Zhang G. (2003)
    6. B-cell activating factor receptor deficiency is assoc iated with an adult-onset antibody deficiency syndrome in humans. (PubMed id 19666484)1, 2, 9 Warnatz K....Eibel H. (2009)
    7. Synthetic anti-BR3 antibodies that mimic BAFF binding and target both human and murine B cells. (PubMed id 16840730)1, 2 Lee C.V.... Fuh G. (2006)
    8. Identification of a novel receptor for B lymphocyte stimulator that is mutated in a mouse strain with severe B cell deficiency. (PubMed id 11591325)1, 2 Yan M.... Dixit V.M. (2001)
    9. BAFF-R, the major B cell-activating factor receptor, is expressed on most mature B cells and B-cell lymphoproliferative disorders. (PubMed id 16226112)1, 9 Rodig S.J....Dorfman D.M. (2005)
    10. An atypical tumor necrosis factor (TNF) receptor-associated factor-binding motif of B cell-activating factor belonging to the TNF family (BAFF) receptor mediates induction of the noncanonical NF-kappaB signaling pathway. (PubMed id 15644327)1, 9 Morrison M.D....Sun S.C. (2005)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 115650 HGNC: 17755 AceView: TNFRSF13C Ensembl:ENSG00000159958 euGenes: HUgn115650
    ECgene: TNFRSF13C Kegg: 115650 H-InvDB: TNFRSF13C

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for TNFRSF13C Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for TNFRSF13C Genetics and Cytogenetics in Oncology and Haematology
    GeneReviewshttp://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/TNFRSF13C

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for TNFRSF13C gene:
    Search GeneIP for patents involving TNFRSF13C

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     EMD Millipore Mono- and Polyclonal Antibodies for the study of TNFRSF13C
     Browse for Gene Knock-down Tools from EMD Millipore
     Browse Purified and Recombinant Proteins at EMD Millipore
     Browse Small Molecules at EMD Millipore
     Browse Kits and Assays available from EMD Millipore
     Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Antibodies for TNFRSF13C (BAFF R/TNFRSF13C)   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Recombinant/Natural Proteins for TNFRSF13C (BAFF R/TNFRSF13C)  
     OriGene Antibodies for TNFRSF13C   OriGene shRNA RFP for TNFRSF13C  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for TNFRSF13C   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for TNFRSF13C  
     OriGene Protein Over-expression Lysate for TNFRSF13C   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for TNFRSF13C   Browse 3'-UTR reporter clones for miRNA target validation  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TNFRSF13C   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TNFRSF13C  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for TNFRSF13C   OriGene Custom Protein Services for TNFRSF13C  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat TNFRSF13C
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TNFRSF13C
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TNFRSF13C
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TNFRSF13C
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TNFRSF13C
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TNFRSF13C
     GenScript Purified and Recombinant Proteins for TNFRSF13C GenScript cDNA clones with any tag delivered in your preferred vector for TNFRSF13C
     GenScript Custom Assay Services for TNFRSF13C GenScript Custom Superior Antibodies Services for TNFRSF13C
     GenScript Custom overexpressing Cell Line Services for TNFRSF13C CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in TNFRSF13C promoter
     Search Chromatin IP Primers for TNFRSF13C
     RT2 qPCR Primer Assay in human, mouse, rat TNFRSF13C
     GNC Network for TNFRSF13C
     SABiosciences PCR Arrays including human, mouse, rat TNFRSF13C
     Search Tocris compounds for TNFRSF13C
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Proteins for TNFRSF13C
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     TNFRSF13C antibodies
     TNFRSF13C proteins
     TNFRSF13C lysates
     Search for Antibodies for TNFRSF13C at Abcam
     See all of Abcam's Antibodies, Kits and Proteins for TNFRSF13C
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Recombinant Protein for TNFRSF13C




     TNFRSF13C Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for TNFRSF13C
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Search Advanced Cell Diagnostics for RNAscope RNA in situ hybridization assays for TNFRSF13C
     SwitchGear 3'UTR luciferase reporter plasmids for TNFRSF13C
     SwitchGear Promoter luciferase reporter plasmids for TNFRSF13C
     ThermoFisher Antibodies for TNFRSF13C
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TNFRSF13C
           
    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 27 Apr 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      TNFRSF13C gene at Home site.
    hostname: 356980-web2.xennexinc.com index build: 100 solr: 1.4