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Aliases for TNFAIP8L1 Gene

Aliases for TNFAIP8L1 Gene

  • Tumor Necrosis Factor, Alpha-Induced Protein 8-Like 1 2 3
  • TNF Alpha-Induced Protein 8-Like Protein 1 3 4
  • Oxidative Stress-Regulated Gene-Beta 3 4
  • TNFAIP8-Like Protein 1 3 4
  • Oxy-Beta 3 4
  • TIPE1 3 4
  • Tumor Necrosis Factor, Alpha-Induced Protein 8-Like Protein 1 3
  • Tumor Necrosis Factor Alpha-Induced Protein 8-Like Protein 1 3

External Ids for TNFAIP8L1 Gene

Previous GeneCards Identifiers for TNFAIP8L1 Gene

  • GC19P004591
  • GC19P004400

Summaries for TNFAIP8L1 Gene

GeneCards Summary for TNFAIP8L1 Gene

TNFAIP8L1 (Tumor Necrosis Factor, Alpha-Induced Protein 8-Like 1) is a Protein Coding gene. An important paralog of this gene is TNFAIP8.

UniProtKB/Swiss-Prot for TNFAIP8L1 Gene

  • Acts as a negative regulator of mTOR activity.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TNFAIP8L1 Gene

Genomics for TNFAIP8L1 Gene

Regulatory Elements for TNFAIP8L1 Gene

Genomic Location for TNFAIP8L1 Gene

Start:
4,639,515 bp from pter
End:
4,655,568 bp from pter
Size:
16,054 bases
Orientation:
Plus strand

Genomic View for TNFAIP8L1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TNFAIP8L1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TNFAIP8L1 Gene

Proteins for TNFAIP8L1 Gene

  • Protein details for TNFAIP8L1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WVP5-TP8L1_HUMAN
    Recommended name:
    Tumor necrosis factor alpha-induced protein 8-like protein 1
    Protein Accession:
    Q8WVP5
    Secondary Accessions:
    • D6W627

    Protein attributes for TNFAIP8L1 Gene

    Size:
    186 amino acids
    Molecular mass:
    20827 Da
    Quaternary structure:
    • Interacts with FBXW5; TNFAIP8L1 competes with TSC2 to bind FBXW5 increasing TSC2 stability by preventing its ubiquitination.

neXtProt entry for TNFAIP8L1 Gene

Proteomics data for TNFAIP8L1 Gene at MOPED

Post-translational modifications for TNFAIP8L1 Gene

No Post-translational modifications

Other Protein References for TNFAIP8L1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TNFAIP8L1 Gene

Domains for TNFAIP8L1 Gene

Protein Domains for TNFAIP8L1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TNFAIP8L1 Gene

Graphical View of Domain Structure for InterPro Entry

Q8WVP5

UniProtKB/Swiss-Prot:

TP8L1_HUMAN :
  • Q8WVP5
Family:
  • Belongs to the TNFAIP8 family.
genes like me logo Genes that share domains with TNFAIP8L1: view

No data available for Gene Families for TNFAIP8L1 Gene

Function for TNFAIP8L1 Gene

Molecular function for TNFAIP8L1 Gene

UniProtKB/Swiss-Prot Function: Acts as a negative regulator of mTOR activity.
UniProtKB/Swiss-Prot Induction: Up-regulated by oxidative stress (OS) at both transcriptional and translational levels.

Gene Ontology (GO) - Molecular Function for TNFAIP8L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with TNFAIP8L1: view

Phenotypes for TNFAIP8L1 Gene

GenomeRNAi human phenotypes for TNFAIP8L1:
genes like me logo Genes that share phenotypes with TNFAIP8L1: view

miRNA for TNFAIP8L1 Gene

miRTarBase miRNAs that target TNFAIP8L1

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for TNFAIP8L1 Gene

Localization for TNFAIP8L1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TNFAIP8L1 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TNFAIP8L1 Gene COMPARTMENTS Subcellular localization image for TNFAIP8L1 gene
Compartment Confidence
cytosol 1
extracellular 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for TNFAIP8L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm ISS --
genes like me logo Genes that share ontologies with TNFAIP8L1: view

Pathways for TNFAIP8L1 Gene

SuperPathways for TNFAIP8L1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TNFAIP8L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0032007 negative regulation of TOR signaling ISS --
genes like me logo Genes that share ontologies with TNFAIP8L1: view

No data available for Pathways by source for TNFAIP8L1 Gene

Transcripts for TNFAIP8L1 Gene

Unigene Clusters for TNFAIP8L1 Gene

Tumor necrosis factor, alpha-induced protein 8-like 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TNFAIP8L1 Gene

No ASD Table

Relevant External Links for TNFAIP8L1 Gene

GeneLoc Exon Structure for
TNFAIP8L1
ECgene alternative splicing isoforms for
TNFAIP8L1

Expression for TNFAIP8L1 Gene

mRNA expression in normal human tissues for TNFAIP8L1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TNFAIP8L1 Gene

This gene is overexpressed in Colon - Sigmoid (4.3).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for TNFAIP8L1 Gene

SOURCE GeneReport for Unigene cluster for TNFAIP8L1 Gene Hs.465643

mRNA Expression by UniProt/SwissProt for TNFAIP8L1 Gene

Q8WVP5-TP8L1_HUMAN
Tissue specificity: High expression detected in most carcinoma cell lines, especially in cells transformed with virus genomes.
genes like me logo Genes that share expressions with TNFAIP8L1: view

Orthologs for TNFAIP8L1 Gene

This gene was present in the common ancestor of animals.

Orthologs for TNFAIP8L1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TNFAIP8L1 35
  • 100 (n)
  • 100 (a)
TNFAIP8L1 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TNFAIP8L1 35
  • 87.46 (n)
  • 84.41 (a)
TNFAIP8L1 36
  • 84 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TNFAIP8L1 35
  • 89.96 (n)
  • 89.78 (a)
TNFAIP8L1 36
  • 51 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tnfaip8l1 35
  • 81 (n)
  • 81.72 (a)
Tnfaip8l1 16
Tnfaip8l1 36
  • 82 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TNFAIP8L1 36
  • 66 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TNFAIP8L1 36
  • 68 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tnfaip8l1 35
  • 78.67 (n)
  • 77.96 (a)
chicken
(Gallus gallus)
Aves TNFAIP8L1 35
  • 74.55 (n)
  • 69.89 (a)
TNFAIP8L1 36
  • 70 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii tnfaip8 36
  • 68 (a)
OneToOne
tnfaip8l1 35
  • 70.07 (n)
  • 68.28 (a)
zgc55331 35
fruit fly
(Drosophila melanogaster)
Insecta CG4091 36
  • 30 (a)
OneToMany
Species with no ortholog for TNFAIP8L1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TNFAIP8L1 Gene

ENSEMBL:
Gene Tree for TNFAIP8L1 (if available)
TreeFam:
Gene Tree for TNFAIP8L1 (if available)

Paralogs for TNFAIP8L1 Gene

Paralogs for TNFAIP8L1 Gene

Selected SIMAP similar genes for TNFAIP8L1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with TNFAIP8L1: view

Variants for TNFAIP8L1 Gene

Sequence variations from dbSNP and Humsavar for TNFAIP8L1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs1060555 -- 4,652,810(+) GACTA(C/G)GGGTT utr-variant-3-prime
rs2003489 -- 4,655,851(-) GGCAC(C/T)CGCCG downstream-variant-500B
rs2363266 -- 4,647,799(-) AAAAA(A/T)TTTTT intron-variant
rs2363267 -- 4,644,229(-) ATTTT(A/T)TTTTT intron-variant
rs2363268 -- 4,644,228(-) TTTTA(A/T)TTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TNFAIP8L1 Gene

Variant ID Type Subtype PubMed ID
dgv3678n71 CNV Loss 21882294
nsv428361 CNV Loss 18775914
dgv3679n71 CNV Loss 21882294
nsv910847 CNV Loss 21882294
nsv526746 CNV Loss 19592680
nsv910848 CNV Loss 21882294
nsv910849 CNV Loss 21882294
dgv3680n71 CNV Loss 21882294
dgv3681n71 CNV Loss 21882294
nsv910856 CNV Loss 21882294
nsv833721 CNV Loss 17160897

Relevant External Links for TNFAIP8L1 Gene

HapMap Linkage Disequilibrium report
TNFAIP8L1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TNFAIP8L1 Gene

Disorders for TNFAIP8L1 Gene

No disorders were found for TNFAIP8L1 Gene.

No data available for UniProtKB/Swiss-Prot for TNFAIP8L1 Gene

Publications for TNFAIP8L1 Gene

  1. The expression of TIPE1 in murine tissues and human cell lines. (PMID: 21600655) Cui J. … Liu S. (Mol. Immunol. 2011) 3 4
  2. Tnfaip8 l1/Oxi-beta binds to FBXW5, increasing autophagy through activation of TSC2 in a Parkinson's disease model. (PMID: 24444419) Ha J.Y. … Son J.H. (J. Neurochem. 2014) 3 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  5. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual J.F. … Vidal M. (Nature 2005) 3

Products for TNFAIP8L1 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • Pathway & Disease-focused RT² Profiler PCR Arrays
    • Molecular Toxicology PathwayFinder 384HT in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate TNFAIP8L1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TNFAIP8L1
    • Block miRNA regulation of TNFAIP8L1 using miScript Target Protectors

    Sources for TNFAIP8L1 Gene

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