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Aliases for TMX4 Gene

Aliases for TMX4 Gene

  • Thioredoxin Related Transmembrane Protein 4 2 3 5
  • Protein Disulfide Isomerase Family A, Member 14 2 3
  • Thioredoxin-Related Transmembrane Protein 4 2 3
  • Thioredoxin Domain-Containing Protein 13 3 4
  • Thioredoxin Domain Containing 13 2 3
  • TXNDC13 3 4
  • DJ971N18.2 3
  • KIAA1162 4
  • PDIA14 3

External Ids for TMX4 Gene

Previous HGNC Symbols for TMX4 Gene

  • TXNDC13

Summaries for TMX4 Gene

Entrez Gene Summary for TMX4 Gene

  • This gene encodes a member of the disulfide isomerase (PDI) family of endoplasmic reticulum (ER) proteins that catalyze protein folding and thiol-disulfide interchange reactions. The encoded protein has an N-terminal ER-signal sequence, a catalytically active thioredoxin domain, one transmembrane domain and C-terminal ASP/GLU-rich calcium binding domain. Unlike most members of this gene family, it lacks a C-terminal ER-retention sequence. The encoded protein has been shown to have reductase activity in vitro. [provided by RefSeq, Jan 2017]

GeneCards Summary for TMX4 Gene

TMX4 (Thioredoxin Related Transmembrane Protein 4) is a Protein Coding gene. GO annotations related to this gene include protein disulfide isomerase activity. An important paralog of this gene is TMX1.

Gene Wiki entry for TMX4 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMX4 Gene

Genomics for TMX4 Gene

Regulatory Elements for TMX4 Gene

Enhancers for TMX4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G008018 1.1 ENCODE 14.6 -0.1 -53 2.8 HDGF PKNOX1 FOXA2 CREB3L1 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 TMX4 GC20P008028
GH20G008722 0.8 ENCODE 11.1 -702.7 -702670 0.2 ELF3 DRAP1 CTCF ARID4B EBF1 RAD21 RELA TEAD3 ZBTB48 ZNF143 LOC105372520 TMX4 LOC105372521 GC20P008831 RNU105B
GH20G008427 1 FANTOM5 Ensembl ENCODE 8.4 -408.1 -408076 1.0 GATA2 HLF MAFK NR2F2 PLCB1 TMX4 GC20P008366 GC20M008621
GH20G008129 0.8 ENCODE 10.4 -110.0 -109980 0.1 ELF3 SOX13 FOXA2 SAP130 CEBPG ZNF644 RARA NR2F6 HOMEZ TCF7L2 TMX4 LOC105372520 PHKBP1 GC20M008185
GH20G008130 0.7 ENCODE 10.4 -109.9 -109890 0.0 ELF3 FOXA2 SAP130 CEBPG ZNF644 NR2F6 TCF7L2 SOX5 TEAD1 CEBPB TMX4 LOC105372520 PHKBP1 GC20M008185
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TMX4 on UCSC Golden Path with GeneCards custom track

Promoters for TMX4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000134274 529 1801 HDGF PKNOX1 FOXA2 CREB3L1 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143

Genomic Location for TMX4 Gene

Chromosome:
20
Start:
7,977,348 bp from pter
End:
8,019,829 bp from pter
Size:
42,482 bases
Orientation:
Minus strand

Genomic View for TMX4 Gene

Genes around TMX4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMX4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMX4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMX4 Gene

Proteins for TMX4 Gene

  • Protein details for TMX4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H1E5-TMX4_HUMAN
    Recommended name:
    Thioredoxin-related transmembrane protein 4
    Protein Accession:
    Q9H1E5
    Secondary Accessions:
    • Q8N4P7
    • Q8NCC1
    • Q9UJA1
    • Q9ULQ8

    Protein attributes for TMX4 Gene

    Size:
    349 amino acids
    Molecular mass:
    38952 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAB56344.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for TMX4 Gene

Post-translational modifications for TMX4 Gene

  • Ubiquitination at Lys115
  • Modification sites at PhosphoSitePlus

Other Protein References for TMX4 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TMX4 Gene

Domains & Families for TMX4 Gene

Gene Families for TMX4 Gene

Protein Domains for TMX4 Gene

Suggested Antigen Peptide Sequences for TMX4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TMX4: view

No data available for UniProtKB/Swiss-Prot for TMX4 Gene

Function for TMX4 Gene

Gene Ontology (GO) - Molecular Function for TMX4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003756 protein disulfide isomerase activity IBA --
genes like me logo Genes that share ontologies with TMX4: view
genes like me logo Genes that share phenotypes with TMX4: view

Animal Model Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for TMX4

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TMX4 Gene

Localization for TMX4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TMX4 Gene

Membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TMX4 gene
Compartment Confidence
endoplasmic reticulum 5
extracellular 2
nucleus 2
mitochondrion 1
peroxisome 1
cytosol 1
lysosome 1

Gene Ontology (GO) - Cellular Components for TMX4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005623 cell IEA --
GO:0005783 endoplasmic reticulum IBA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TMX4: view

Pathways & Interactions for TMX4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TMX4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006457 protein folding IBA --
GO:0034976 response to endoplasmic reticulum stress IBA --
GO:0045454 cell redox homeostasis IEA --
GO:0055114 oxidation-reduction process IEA --
genes like me logo Genes that share ontologies with TMX4: view

No data available for Pathways by source and SIGNOR curated interactions for TMX4 Gene

Drugs & Compounds for TMX4 Gene

No Compound Related Data Available

Transcripts for TMX4 Gene

Unigene Clusters for TMX4 Gene

Thioredoxin-related transmembrane protein 4:
Representative Sequences:

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for TMX4

Alternative Splicing Database (ASD) splice patterns (SP) for TMX4 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b · 8c ^ 9 ^ 10
SP1: - -
SP2: -
SP3:
SP4: - -
SP5: - - - -

Relevant External Links for TMX4 Gene

GeneLoc Exon Structure for
TMX4
ECgene alternative splicing isoforms for
TMX4

Expression for TMX4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMX4 Gene

Protein differential expression in normal tissues from HIPED for TMX4 Gene

This gene is overexpressed in Nasal epithelium (21.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for TMX4 Gene



Protein tissue co-expression partners for TMX4 Gene

NURSA nuclear receptor signaling pathways regulating expression of TMX4 Gene:

TMX4

SOURCE GeneReport for Unigene cluster for TMX4 Gene:

Hs.169358

Evidence on tissue expression from TISSUES for TMX4 Gene

  • Nervous system(4.8)
  • Liver(4.4)
  • Lung(2.9)
  • Heart(2)
genes like me logo Genes that share expression patterns with TMX4: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMX4 Gene

Orthologs for TMX4 Gene

This gene was present in the common ancestor of animals.

Orthologs for TMX4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TMX4 34 35
  • 99.14 (n)
dog
(Canis familiaris)
Mammalia TMX4 34 35
  • 86.67 (n)
cow
(Bos Taurus)
Mammalia TMX4 34 35
  • 86.63 (n)
-- 35
  • 63 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Tmx4 34
  • 84.44 (n)
mouse
(Mus musculus)
Mammalia Tmx4 34 16 35
  • 83.78 (n)
oppossum
(Monodelphis domestica)
Mammalia TMX4 35
  • 64 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TMX4 35
  • 49 (a)
OneToOne
chicken
(Gallus gallus)
Aves TMX4 34 35
  • 65.2 (n)
lizard
(Anolis carolinensis)
Reptilia TMX4 35
  • 52 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tmx4 34
  • 64.64 (n)
Str.19537 34
zebrafish
(Danio rerio)
Actinopterygii tmx4 34 35
  • 57.47 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG5554 35
  • 29 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea dpy-11 35
  • 33 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 29 (a)
OneToMany
Species where no ortholog for TMX4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TMX4 Gene

ENSEMBL:
Gene Tree for TMX4 (if available)
TreeFam:
Gene Tree for TMX4 (if available)

Paralogs for TMX4 Gene

Paralogs for TMX4 Gene

(2) SIMAP similar genes for TMX4 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with TMX4: view

Variants for TMX4 Gene

Sequence variations from dbSNP and Humsavar for TMX4 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1000104146 -- 7,989,422(+) CAAGA(A/T)ACTTT intron-variant
rs1000337228 -- 8,007,822(+) GGCCA(A/T)CCTAA intron-variant
rs1000355043 -- 7,991,726(+) AGACA(A/G)TAATG intron-variant
rs1000613398 -- 7,985,237(+) TGTGT(A/G)TATAT intron-variant
rs1000686447 -- 7,990,277(+) GTGAC(A/G)CAGTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMX4 Gene

Variant ID Type Subtype PubMed ID
esv2422203 CNV duplication 17116639
esv3584438 CNV loss 25503493
esv3893279 CNV gain 25118596
nsv1059059 CNV gain 25217958
nsv585384 CNV gain 21841781

Variation tolerance for TMX4 Gene

Residual Variation Intolerance Score: 62.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.89; 35.28% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TMX4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMX4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TMX4 Gene

Disorders for TMX4 Gene

Relevant External Links for TMX4

Genetic Association Database (GAD)
TMX4
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMX4

No disorders were found for TMX4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMX4 Gene

Publications for TMX4 Gene

  1. Novel thioredoxin-related transmembrane protein TMX4 has reductase activity. (PMID: 20056998) Sugiura Y. … Nagata K. (J. Biol. Chem. 2010) 2 3 64
  2. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen J.V. … Mann M. (Cell 2006) 3 4 64
  3. Signal sequence and keyword trap in silico for selection of full- length human cDNAs encoding secretion or membrane proteins from oligo- capped cDNA libraries. (PMID: 16303743) Otsuki T. … Isogai T. (DNA Res. 2005) 3 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4 64

Products for TMX4 Gene

  • Addgene plasmids for TMX4

Sources for TMX4 Gene

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