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Aliases for TMX3 Gene

Aliases for TMX3 Gene

  • Thioredoxin-Related Transmembrane Protein 3 2 3 4
  • Thioredoxin Domain-Containing Protein 10 3 4
  • Thioredoxin Domain Containing 10 2 3
  • EC 5.3.4.1 4 63
  • TXNDC10 3 4
  • Protein Disulfide Isomerase Family A, Member 13 3
  • Protein Disulfide Isomerase Family A 2
  • Member 13 2
  • KIAA1830 4
  • PDIA13 3

External Ids for TMX3 Gene

Previous HGNC Symbols for TMX3 Gene

  • TXNDC10

Previous GeneCards Identifiers for TMX3 Gene

  • GC18M064493
  • GC18M066340
  • GC18M063058

Summaries for TMX3 Gene

GeneCards Summary for TMX3 Gene

TMX3 (Thioredoxin-Related Transmembrane Protein 3) is a Protein Coding gene. GO annotations related to this gene include calcium ion binding and protein disulfide isomerase activity. An important paralog of this gene is PDIA3.

UniProtKB/Swiss-Prot for TMX3 Gene

  • Probable disulfide isomerase, which participates in the folding of proteins containing disulfide bonds. May act as a dithiol oxidase.

Gene Wiki entry for TMX3 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMX3 Gene

Genomics for TMX3 Gene

Regulatory Elements for TMX3 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for TMX3 Gene

Chromosome:
18
Start:
68,673,688 bp from pter
End:
68,715,298 bp from pter
Size:
41,611 bases
Orientation:
Minus strand

Genomic View for TMX3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TMX3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMX3 Gene

Proteins for TMX3 Gene

  • Protein details for TMX3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96JJ7-TMX3_HUMAN
    Recommended name:
    Protein disulfide-isomerase TMX3
    Protein Accession:
    Q96JJ7
    Secondary Accessions:
    • B3KV75
    • Q52LT7
    • Q8N5J0
    • Q9NWJ9

    Protein attributes for TMX3 Gene

    Size:
    454 amino acids
    Molecular mass:
    51872 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAA91381.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=BAB47459.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for TMX3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TMX3 Gene

Proteomics data for TMX3 Gene at MOPED

Post-translational modifications for TMX3 Gene

Domains & Families for TMX3 Gene

Gene Families for TMX3 Gene

Protein Domains for TMX3 Gene

Graphical View of Domain Structure for InterPro Entry

Q96JJ7

UniProtKB/Swiss-Prot:

TMX3_HUMAN :
  • The di-lysine motif confers endoplasmic reticulum localization for type I membrane proteins.
  • Belongs to the protein disulfide isomerase family.
Domain:
  • The di-lysine motif confers endoplasmic reticulum localization for type I membrane proteins.
  • Contains 1 thioredoxin domain.
Family:
  • Belongs to the protein disulfide isomerase family.
genes like me logo Genes that share domains with TMX3: view

Function for TMX3 Gene

Molecular function for TMX3 Gene

UniProtKB/Swiss-Prot BiophysicochemicalProperties:
Redox potential: E(0) is -157 mV. {ECO:0000269 PubMed:15623505};
UniProtKB/Swiss-Prot CatalyticActivity:
Catalyzes the rearrangement of -S-S- bonds in proteins.
UniProtKB/Swiss-Prot Function:
Probable disulfide isomerase, which participates in the folding of proteins containing disulfide bonds. May act as a dithiol oxidase.
UniProtKB/Swiss-Prot Induction:
Not up-regulated by unfolded protein response (UPR).

Enzyme Numbers (IUBMB) for TMX3 Gene

Gene Ontology (GO) - Molecular Function for TMX3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003756 protein disulfide isomerase activity IBA --
GO:0005515 protein binding IPI 25416956
GO:0016972 thiol oxidase activity IDA 15623505
genes like me logo Genes that share ontologies with TMX3: view

Phenotypes for TMX3 Gene

GenomeRNAi human phenotypes for TMX3:
genes like me logo Genes that share phenotypes with TMX3: view

Animal Model Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TMX3

In Situ Assay Products

Flow Cytometry Products

No data available for Animal Models , Transcription Factor Targets and HOMER Transcription for TMX3 Gene

Localization for TMX3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TMX3 Gene

Endoplasmic reticulum membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TMX3 Gene COMPARTMENTS Subcellular localization image for TMX3 gene
Compartment Confidence
endoplasmic reticulum 3

Gene Ontology (GO) - Cellular Components for TMX3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005623 cell --
GO:0005789 endoplasmic reticulum membrane IDA 15623505
GO:0009986 cell surface IDA 19995400
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TMX3: view

Pathways & Interactions for TMX3 Gene

SuperPathways for TMX3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TMX3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006457 protein folding IBA --
GO:0018171 peptidyl-cysteine oxidation IDA 15623505
GO:0034976 response to endoplasmic reticulum stress IBA --
GO:0045454 cell redox homeostasis IEA --
genes like me logo Genes that share ontologies with TMX3: view

No data available for Pathways by source and SIGNOR curated interactions for TMX3 Gene

Drugs & Compounds for TMX3 Gene

No Compound Related Data Available

Transcripts for TMX3 Gene

Unigene Clusters for TMX3 Gene

Thioredoxin-related transmembrane protein 3:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TMX3

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMX3 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11a · 11b ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18
SP1: - - - -
SP2: - - - -
SP3: - -
SP4: - - -
SP5: - -
SP6: -
SP7:

Relevant External Links for TMX3 Gene

GeneLoc Exon Structure for
TMX3
ECgene alternative splicing isoforms for
TMX3

Expression for TMX3 Gene

mRNA expression in normal human tissues for TMX3 Gene

Protein differential expression in normal tissues from HIPED for TMX3 Gene

This gene is overexpressed in Nasal epithelium (17.4), Lymph node (9.7), and Bone (6.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for TMX3 Gene



SOURCE GeneReport for Unigene cluster for TMX3 Gene Hs.440534

mRNA Expression by UniProt/SwissProt for TMX3 Gene

Q96JJ7-TMX3_HUMAN
Tissue specificity: Widely expressed. Expressed in brain, testis, lung, skin, kidney, uterus, bone, stomach, liver, prostate, placenta, eye and muscle.
genes like me logo Genes that share expression patterns with TMX3: view

Protein tissue co-expression partners for TMX3 Gene

- Elite partner

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for TMX3 Gene

Orthologs for TMX3 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for TMX3 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia TMX3 35
  • 87.37 (n)
  • 88.77 (a)
TMX3 36
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TMX3 35
  • 90.8 (n)
  • 92.27 (a)
TMX3 36
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tmx3 35
  • 90.5 (n)
  • 92.43 (a)
Tmx3 16
Tmx3 36
  • 91 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia TMX3 35
  • 99.49 (n)
  • 99.56 (a)
TMX3 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tmx3 35
  • 88.51 (n)
  • 89.04 (a)
oppossum
(Monodelphis domestica)
Mammalia TMX3 36
  • 71 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TMX3 36
  • 85 (a)
OneToOne
chicken
(Gallus gallus)
Aves TMX3 35
  • 75.79 (n)
  • 78.37 (a)
TMX3 36
  • 77 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TMX3 36
  • 71 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tmx3 35
  • 71.03 (n)
  • 72.28 (a)
zebrafish
(Danio rerio)
Actinopterygii zgc:152808 35
  • 64.55 (n)
  • 67.01 (a)
tmx3 36
  • 49 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP005431 35
  • 43.54 (n)
  • 30.61 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG5027 35
  • 46.48 (n)
  • 30.4 (a)
CG5027 36
  • 29 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea ZK973.11 35
  • 47.25 (n)
  • 33.24 (a)
ZK973.11 36
  • 29 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes EUG1 36
  • 13 (a)
ManyToMany
PDI1 36
  • 14 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.10269 36
  • 32 (a)
OneToOne
Species with no ortholog for TMX3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TMX3 Gene

ENSEMBL:
Gene Tree for TMX3 (if available)
TreeFam:
Gene Tree for TMX3 (if available)

Paralogs for TMX3 Gene

Paralogs for TMX3 Gene

genes like me logo Genes that share paralogs with TMX3: view

Variants for TMX3 Gene

Sequence variations from dbSNP and Humsavar for TMX3 Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type MAF
rs167443 -- 68,684,944(+) TGGCC(A/G)TTGAC intron-variant
rs167444 -- 68,694,608(-) cttgc(A/G)cccac intron-variant
rs172630 -- 68,691,887(-) TCAAA(A/G)TAAGT intron-variant
rs177919 -- 68,686,139(+) GCGTC(A/G)GGAGG intron-variant
rs177920 -- 68,704,445(-) TCCTG(A/T)TTTAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMX3 Gene

Variant ID Type Subtype PubMed ID
nsv458117 CNV Gain 19166990
esv847 CNV CNV 17122850
dgv1044e1 CNV Complex 17122850
dgv3446n71 CNV Gain 21882294

Variation tolerance for TMX3 Gene

Residual Variation Intolerance Score: 63.54% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.31; 41.29% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TMX3 Gene

HapMap Linkage Disequilibrium report
TMX3
Human Gene Mutation Database (HGMD)
TMX3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TMX3 Gene

Disorders for TMX3 Gene

Relevant External Links for TMX3

Genetic Association Database (GAD)
TMX3
Human Genome Epidemiology (HuGE) Navigator
TMX3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMX3
genes like me logo Genes that share disorders with TMX3: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMX3 Gene

Publications for TMX3 Gene

  1. Identification and characterization of a novel thioredoxin-related transmembrane protein of the endoplasmic reticulum. (PMID: 15623505) Haugstetter J. … Ellgaard L. (J. Biol. Chem. 2005) 2 23 67
  2. A male with unilateral microphthalmia reveals a role for TMX3 in eye development. (PMID: 20485507) Chao R. … Slavotinek A. (PLoS ONE 2010) 23 67
  3. N-terminome analysis of the human mitochondrial proteome. (PMID: 25944712) Vaca Jacome A.S. … Carapito C. (Proteomics 2015) 67
  4. Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation. (PMID: 25921289) Emdal K.B. … Olsen J.V. (Sci Signal 2015) 67
  5. The central role of EED in the orchestration of polycomb group complexes. (PMID: 24457600) Cao Q. … Chinnaiyan A.M. (Nat Commun 2014) 67

Products for TMX3 Gene

Sources for TMX3 Gene

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