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Aliases for TMX2-CTNND1 Gene

Subcategory (RNA class) for TMX2-CTNND1 Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for TMX2-CTNND1 Gene

  • TMX2-CTNND1 Readthrough (NMD Candidate) 2 3

External Ids for TMX2-CTNND1 Gene

Summaries for TMX2-CTNND1 Gene

Entrez Gene Summary for TMX2-CTNND1 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring TMX2 (thioredoxin-related transmembrane protein 2) and CTNND1 (catenin, cadherin-associated protein, delta 1) genes on chromosome 11. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is therefore unlikely to produce a protein product. [provided by RefSeq, Dec 2010]

GeneCards Summary for TMX2-CTNND1 Gene

TMX2-CTNND1 is a RNA Gene, and belongs to ncRNA RNA class. An important paralog of this gene is TMX2.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMX2-CTNND1 Gene

Genomics for TMX2-CTNND1 Gene

Genomic Location for TMX2-CTNND1 Gene

Start:
57,712,523 bp from pter
End:
57,819,180 bp from pter
Size:
106,658 bases
Orientation:
Plus strand

Genomic View for TMX2-CTNND1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TMX2-CTNND1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMX2-CTNND1 Gene

No data available for Regulatory Elements for TMX2-CTNND1 Gene

Proteins for TMX2-CTNND1 Gene

  • Protein details for TMX2-CTNND1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    H3BSU7-H3BSU7
    Recommended name:
    Protein TMX2-CTNND1
    Protein Accession:
    H3BSU7
    Secondary Accessions:

    Protein attributes for TMX2-CTNND1 Gene

    Size:
    103 amino acids
    Molecular mass:
    11615 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TMX2-CTNND1 Gene

Proteomics data for TMX2-CTNND1 Gene at MOPED

Post-translational modifications for TMX2-CTNND1 Gene

No Post-translational modifications

Other Protein References for TMX2-CTNND1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TMX2-CTNND1 Gene

Domains for TMX2-CTNND1 Gene

Protein Domains for TMX2-CTNND1 Gene

ProtoNet:
genes like me logo Genes that share domains with TMX2-CTNND1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for TMX2-CTNND1 Gene

Function for TMX2-CTNND1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TMX2-CTNND1 Gene

Localization for TMX2-CTNND1 Gene

No data available for Gene Ontology (GO) - Cellular Components for TMX2-CTNND1 Gene

Pathways for TMX2-CTNND1 Gene

SuperPathways for TMX2-CTNND1 Gene

No Data Available

Interacting Proteins for TMX2-CTNND1 Gene

STRING Interaction Network Preview (showing 3 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000456881%0d%0a9606.ENSP00000244769%0d%0a9606.ENSP00000356231%0d%0a9606.ENSP00000370984%0d%0a
Selected Interacting proteins: ENSP00000456881 for TMX2-CTNND1 Gene via STRING

Gene Ontology (GO) - Biological Process for TMX2-CTNND1 Gene

None

No data available for Pathways by source for TMX2-CTNND1 Gene

Transcripts for TMX2-CTNND1 Gene

mRNA/cDNA for TMX2-CTNND1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TMX2-CTNND1 Gene

No ASD Table

Relevant External Links for TMX2-CTNND1 Gene

GeneLoc Exon Structure for
TMX2-CTNND1
ECgene alternative splicing isoforms for
TMX2-CTNND1

Expression for TMX2-CTNND1 Gene

mRNA expression in normal human tissues for TMX2-CTNND1 Gene

genes like me logo Genes that share expressions with TMX2-CTNND1: view

Orthologs for TMX2-CTNND1 Gene

This gene was present in the common ancestor of animals.

Orthologs for TMX2-CTNND1 Gene

Organism Taxonomy Gene Similarity Type Details
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 28 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 13 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 37
  • 26 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 27 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii tmx2a 37
  • 18 (a)
ManyToMany
tmx2b 37
  • 20 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta CG11007 37
  • 11 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea C35D10.10 37
  • 10 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.5859 37
  • 12 (a)
OneToMany
Species with no ortholog for TMX2-CTNND1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for TMX2-CTNND1 Gene

ENSEMBL:
Gene Tree for TMX2-CTNND1 (if available)
TreeFam:
Gene Tree for TMX2-CTNND1 (if available)

Paralogs for TMX2-CTNND1 Gene

Paralogs for TMX2-CTNND1 Gene

Selected SIMAP similar genes for TMX2-CTNND1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with TMX2-CTNND1: view

Variants for TMX2-CTNND1 Gene

Sequence variations from dbSNP and Humsavar for TMX2-CTNND1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs501738 -- 57,758,411(-) ATTCA(C/T)TGATT intron-variant
rs507827 -- 57,759,567(-) ttctt(G/T)gggcc intron-variant
rs511708 -- 57,754,109(+) CTCAC(G/T)GCAGC intron-variant
rs552122 -- 57,758,328(-) TCACT(A/G)CTCAC intron-variant
rs7949841 -- 57,757,228(+) actct(C/G)tcgcc intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMX2-CTNND1 Gene

Variant ID Type Subtype PubMed ID
nsv832163 CNV Gain 17160897
nsv832164 CNV Loss 17160897
nsv508633 CNV Loss 20534489
nsv326 CNV Insertion 18451855
esv2668702 CNV Deletion 23128226
nsv327 CNV Loss 18451855

Relevant External Links for TMX2-CTNND1 Gene

HapMap Linkage Disequilibrium report
TMX2-CTNND1

Disorders for TMX2-CTNND1 Gene

No disorders were found for TMX2-CTNND1 Gene.

No data available for UniProtKB/Swiss-Prot for TMX2-CTNND1 Gene

Publications for TMX2-CTNND1 Gene

  1. Prediction of the coding sequences of unidentified human genes. VII. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. (PMID: 9205841) Nagase T. … Ohara O. (DNA Res. 1997) 3
  2. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3

Products for TMX2-CTNND1 Gene

Sources for TMX2-CTNND1 Gene

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