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Aliases for TMTC2 Gene

Aliases for TMTC2 Gene

  • Transmembrane And Tetratricopeptide Repeat Containing 2 2 3
  • IBDBP1, Transcript 1 3
  • IBDBP1 Transcript 2 3
  • IBDBP1 3

External Ids for TMTC2 Gene

Previous GeneCards Identifiers for TMTC2 Gene

  • GC12P081584
  • GC12P083080
  • GC12P080139

Summaries for TMTC2 Gene

GeneCards Summary for TMTC2 Gene

TMTC2 (Transmembrane And Tetratricopeptide Repeat Containing 2) is a Protein Coding gene. Diseases associated with TMTC2 include glaucoma 1, open angle, e. GO annotations related to this gene include identical protein binding. An important paralog of this gene is TMTC3.

Gene Wiki entry for TMTC2 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMTC2 Gene

Genomics for TMTC2 Gene

Regulatory Elements for TMTC2 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for TMTC2 Gene

82,686,880 bp from pter
83,134,870 bp from pter
447,991 bases
Plus strand

Genomic View for TMTC2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TMTC2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMTC2 Gene

Proteins for TMTC2 Gene

  • Protein details for TMTC2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Transmembrane and TPR repeat-containing protein 2
    Protein Accession:
    Secondary Accessions:
    • B2RCU7
    • Q8N2K8

    Protein attributes for TMTC2 Gene

    836 amino acids
    Molecular mass:
    94130 Da
    Quaternary structure:
    No Data Available
    • Sequence=BAC11102.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for TMTC2 Gene

Proteomics data for TMTC2 Gene at MOPED

Post-translational modifications for TMTC2 Gene

  • Glycosylation at Asn 221
  • Modification sites at PhosphoSitePlus

Other Protein References for TMTC2 Gene

No data available for DME Specific Peptides for TMTC2 Gene

Domains & Families for TMTC2 Gene

Gene Families for TMTC2 Gene

Protein Domains for TMTC2 Gene

Suggested Antigen Peptide Sequences for TMTC2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the TMTC family.
  • Contains 10 TPR repeats.
  • Belongs to the TMTC family.
  • Contains 10 TPR repeats.
genes like me logo Genes that share domains with TMTC2: view

Function for TMTC2 Gene

Gene Ontology (GO) - Molecular Function for TMTC2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 24764305
genes like me logo Genes that share ontologies with TMTC2: view

Phenotypes for TMTC2 Gene

genes like me logo Genes that share phenotypes with TMTC2: view

Animal Model Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TMTC2

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for TMTC2 Gene

Localization for TMTC2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TMTC2 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

Jensen Localization Image for TMTC2 Gene COMPARTMENTS Subcellular localization image for TMTC2 gene
Compartment Confidence
endoplasmic reticulum 5
cytoskeleton 2
cytosol 2

Gene Ontology (GO) - Cellular Components for TMTC2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005783 endoplasmic reticulum IDA --
GO:0005789 endoplasmic reticulum membrane IDA 24764305
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TMTC2: view

Pathways & Interactions for TMTC2 Gene

SuperPathways for TMTC2 Gene

No Data Available

Interacting Proteins for TMTC2 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
Selected Interacting proteins: Q8N394-TMTC2_HUMAN ENSP00000322300 for TMTC2 Gene via I2D STRING

Gene Ontology (GO) - Biological Process for TMTC2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0055074 calcium ion homeostasis IMP 24764305
genes like me logo Genes that share ontologies with TMTC2: view

No data available for Pathways by source and SIGNOR curated interactions for TMTC2 Gene

Drugs & Compounds for TMTC2 Gene

No Compound Related Data Available

Transcripts for TMTC2 Gene

Unigene Clusters for TMTC2 Gene

Transmembrane and tetratricopeptide repeat containing 2:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TMTC2

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMTC2 Gene

No ASD Table

Relevant External Links for TMTC2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TMTC2 Gene

mRNA expression in normal human tissues for TMTC2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TMTC2 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x4.1).

Protein differential expression in normal tissues from HIPED for TMTC2 Gene

This gene is overexpressed in Liver (49.6) and Frontal cortex (16.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MOPED, and MaxQB for TMTC2 Gene

SOURCE GeneReport for Unigene cluster for TMTC2 Gene Hs.577775

genes like me logo Genes that share expression patterns with TMTC2: view

Protein tissue co-expression partners for TMTC2 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for TMTC2 Gene

Orthologs for TMTC2 Gene

This gene was present in the common ancestor of animals.

Orthologs for TMTC2 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia TMTC2 35
  • 92.42 (n)
  • 96.17 (a)
TMTC2 36
  • 93 (a)
(Canis familiaris)
Mammalia TMTC2 35
  • 89.67 (n)
  • 95.45 (a)
TMTC2 36
  • 95 (a)
(Mus musculus)
Mammalia Tmtc2 35
  • 88.8 (n)
  • 95.69 (a)
Tmtc2 16
Tmtc2 36
  • 96 (a)
(Pan troglodytes)
Mammalia TMTC2 35
  • 99.4 (n)
  • 99.4 (a)
TMTC2 36
  • 99 (a)
(Rattus norvegicus)
Mammalia Tmtc2 35
  • 88.56 (n)
  • 96.05 (a)
(Monodelphis domestica)
Mammalia TMTC2 36
  • 90 (a)
(Ornithorhynchus anatinus)
Mammalia TMTC2 36
  • 87 (a)
(Gallus gallus)
Aves TMTC2 35
  • 81.28 (n)
  • 87.16 (a)
TMTC2 36
  • 86 (a)
(Anolis carolinensis)
Reptilia TMTC2 36
  • 83 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia tmtc2 35
  • 76.44 (n)
  • 82.78 (a)
(Danio rerio)
Actinopterygii tmtc2 35
  • 66.51 (n)
  • 71.86 (a)
tmtc2 36
  • 69 (a)
TMTC2 (1 of 2) 36
  • 75 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP009112 35
  • 50.29 (n)
  • 45.36 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG4341 35
  • 48.28 (n)
  • 43.27 (a)
CG31690 36
  • 35 (a)
CG4341 36
  • 35 (a)
(Caenorhabditis elegans)
Secernentea F32D1.3 35
  • 43.7 (n)
  • 34.93 (a)
F32D1.3 36
  • 32 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 39 (a)
Species with no ortholog for TMTC2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TMTC2 Gene

Gene Tree for TMTC2 (if available)
Gene Tree for TMTC2 (if available)

Paralogs for TMTC2 Gene

Paralogs for TMTC2 Gene

(3) SIMAP similar genes for TMTC2 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with TMTC2: view

Variants for TMTC2 Gene

Sequence variations from dbSNP and Humsavar for TMTC2 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs2111 -- 82,813,368(+) TTTAC(C/T)AAGTG intron-variant, upstream-variant-2KB
rs366075 -- 82,983,182(-) AGTGT(G/T)TACTA intron-variant
rs367012 -- 83,050,856(-) CATGA(A/C)ACAAT intron-variant
rs367772 -- 83,043,529(-) AAACA(C/G)AACAT intron-variant
rs369299 -- 83,043,092(-) CTCTA(G/T)CCTTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMTC2 Gene

Variant ID Type Subtype PubMed ID
nsv899348 CNV Gain 21882294
nsv899349 CNV Gain 21882294
nsv521849 CNV Gain 19592680
esv1008305 CNV Loss 20482838
esv5126 CNV Deletion 18987735
nsv507662 CNV Insertion 20534489
nsv469490 CNV Loss 19166990
dgv523e1 CNV Complex 17122850
nsv469491 CNV Loss 19166990
esv999149 CNV Loss 20482838
esv1003105 CNV Deletion 20482838
nsv899350 CNV Loss 21882294
nsv899351 CNV Loss 21882294
dgv33e180 CNV Loss 20482838
essv19112 CNV CNV 17122850
esv30004 CNV Loss 17803354
nsv469492 CNV Loss 19166990
nsv516625 CNV Loss 19592680
nsv818928 CNV Loss 17921354
nsv469494 CNV Loss 19166990
nsv437765 CNV Loss 16327808
esv2663704 CNV Deletion 23128226
esv2421910 CNV Deletion 20811451
nsv442650 CNV CNV 18776908
nsv832472 CNV Loss 17160897
esv29204 CNV Loss 19812545
esv2746123 CNV Deletion 23290073
esv2746124 CNV Deletion 23290073
esv1419949 CNV Insertion 17803354
esv2746125 CNV Deletion 23290073
nsv469495 CNV Loss 19166990
esv2016291 CNV Deletion 18987734
esv1011810 CNV Insertion 17803354
nsv523902 CNV Loss 19592680
esv9165 CNV Gain 19470904
esv2746126 CNV Deletion 23290073

Variation tolerance for TMTC2 Gene

Residual Variation Intolerance Score: 26.38% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.41; 63.81% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TMTC2 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TMTC2 Gene

Disorders for TMTC2 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TMTC2 Gene - From: DISEASES

Disorder Aliases PubMed IDs
glaucoma 1, open angle, e
  • primary open angle glaucoma
- elite association
Search TMTC2 in MalaCards View complete list of genes associated with diseases

Relevant External Links for TMTC2

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with TMTC2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TMTC2 Gene

Publications for TMTC2 Gene

  1. TMTC1 and TMTC2 are novel endoplasmic reticulum tetratricopeptide repeat-containing adapter proteins involved in calcium homeostasis. (PMID: 24764305) Sunryd J.C. … Hebert D.N. (J. Biol. Chem. 2014) 2 67
  2. Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process. (PMID: 25241763) Springelkamp H. … Hammond C.J. (Nat Commun 2014) 67
  3. CBFI^ stabilizes HIV Vif to counteract APOBEC3 at the expense of RUNX1 target gene expression. (PMID: 23333304) Kim D.Y. … Gross J.D. (Mol. Cell 2013) 67
  4. A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. (PMID: 22219177) Tao S. … Sun J. (Carcinogenesis 2012) 67
  5. Genome-wide association study of antibody response to smallpox vaccine. (PMID: 22542470) Ovsyannikova I.G. … Poland G.A. (Vaccine 2012) 67

Products for TMTC2 Gene

Sources for TMTC2 Gene

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