TMSB4XP4 Gene
pseudogene GIFtS: 23
GCID: GC09P131105
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thymosin beta 4, X-linked pseudogene 4(Previous names: thymosin-like 4, thymosin-like 4 (pseudogene) )
(Previous symbol: TMSL4)
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Aliases
for TMSB4XP4 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Thymosin Beta 4, X-Linked Pseudogene 41 2 | | TMSL41 2 | | Thymosin-Like 41 | | Thymosin-Like 4 (Pseudogene)1 | | Protein TMSB4XP44 |
Export aliases for TMSB4XP4 gene to outside databases |
Summaries
for TMSB4XP4 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for TMSB4XP4 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for TMSB4XP4
Other transcription factors
Search SABiosciences Chromatin IP Primers for TMSB4XP4
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TMSB4XP4 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 9q34.11 Ensembl cytogenetic band: 9q34.11 HGNC cytogenetic band: 9q34.11TMSB4XP4 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 9 GeneLoc Exon Structure GeneLoc location for GC09P131105: view genomic region
(about GC identifiers)
Start:
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131,104,334 bp from pter |
End:
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131,105,073 bp from pter |
Size:
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740 bases |
Orientation:
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plus strand |
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Proteins
for TMSB4XP4 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
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UniProtKB/TrEMBL: Q5T4B6 (See
protein sequence)Recommended Name: HCG1780554 Size: 44 amino acids; 5113 DaTMSB4XP4 Protein expression data from MOPED and PaxDb: About this image 
ENSEMBL proteins: ENSP00000378430
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
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| GO:0005737 | cytoplasm |
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TMSB4XP4 for ontologies About GeneDecksing
TMSB4XP4 Antibody Products:
Assay Products for TMSB4XP4: |
Protein
Domains /
Families
for TMSB4XP4 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
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TMSB4XP4 for domains About GeneDecksing
2 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q5T4B6ProtoNet protein and cluster: Q5T4B6 1 Blocks protein family: IPB001152 Thymosin beta-4
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Function
for TMSB4XP4 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
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Gene Ontology (GO): 1 molecular function term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
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| GO:0003779 | actin binding |
-- | -- |
TMSB4XP4 for ontologies About GeneDecksing
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Pathways & Interactions
for TMSB4XP4 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
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Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TMSB4XP4
STRING Interaction
Network Preview (showing 1 interactants - click image to see more details)
5/8 Interacting proteins for TMSB4XP4 (Q5T4B63 ENSP000003784304) via UniProtKB, MINT, STRING, and/or I2D (see all 8)About this table
Gene Ontology (GO): 2 biological process terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
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| GO:0030036 | actin cytoskeleton organization |
-- | -- | | GO:0042989 | sequestering of actin monomers |
-- | -- |
TMSB4XP4 for ontologies About GeneDecksing
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Drugs & Compounds
for TMSB4XP4 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for TMSB4XP4
Search CenterWatch for drugs/clinical trials and news about TMSB4XP4 
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Transcripts
for TMSB4XP4 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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1 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000323496
20 AceView cDNA sequences: NM_182794 BI495532 BG943909 CB219715 CB219820 AW404596 CB219855 CB219864 CB219880 N93046 BE774839 AI869472 AV707234 AW945884 AI341952 AW016791 AI904573 BE826239 BE826476 BE826222
GeneLoc Exon Structure
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Expression
for TMSB4XP4 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| See probesets specificity/sensitivity at GeneAnnot
CGAP TAG: --
See TMSB4XP4 Protein Expression from SPIRE MOPED and PaxDB SABiosciences Custom PCR Arrays for TMSB4XP4
Primer
Products: |  | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat TMSB4XP4 | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TMSB4XP4 | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TMSB4XP4 |
Orthologs
for TMSB4XP4 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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This gene was present in the common ancestor of chordates.
Orthologs for TMSB4XP4 gene from 3/8 species (see all 8) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
chicken
(Gallus gallus) |
Aves |
TMSB106 |
Uncharacterized protein |
81(a) |
1 → many |
13(14578839-14579804) |
lizard
(Anolis carolinensis) |
Reptilia |
TMSL46 |
-- |
95(a) |
1 → many |
3(120076424-120076936) |
zebrafish
(Danio rerio) |
Actinopterygii |
zgc:1951546 |
zgc:195154 |
77(a) |
1 → many |
9(56198178-56199762) |
Species with no ortholog for TMSB4XP4
ENSEMBL Gene Tree for TMSB4XP4 (if available)
TreeFam Gene Tree for TMSB4XP4 (if available) |
Paralogs
for TMSB4XP4 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for TMSB4XP4 gene
- TMSB15B2 TMSB15A2 TMSB4Y2 TMSB4X2 TMSB102
5 SIMAP similar genes for TMSB4XP4 using alignment to 1 protein entry: Q5T4B6_HUMAN:TMSB4X TMSB10 TMSB15B TMSB4Y TMSB15A
TMSB4XP4 for paralogs About GeneDecksing
1 Pseudogenes.org Pseudogene for TMSB4XP4
PGOHUM00000262017
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Genomic Variants
for TMSB4XP4 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
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| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 9 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for TMSB4XP4 (131104334 - 131105073 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for TMSB4XP4: -- | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for TMSB4XP4 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for TMSB4XP4 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
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External Searches for TMSB4XP4 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing TMSB4XP4 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
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Other Databases showing TMSB4XP4 gene
(According to HUGE)
About This Section
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Specialized Databases showing TMSB4XP4 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for TMSB4XP4 | Pharmacogenomics, SNPs, Pathways |
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About This Section
| Patent Information for TMSB4XP4 gene:
Search GeneIP for patents involving TMSB4XP4
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Products
for TMSB4XP4 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat TMSB4XP4 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TMSB4XP4 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TMSB4XP4 | | | Search QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TMSB4XP4 | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TMSB4XP4 | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TMSB4XP4 |
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 | | | | |  |  |  | | | | Search ThermoFisher Antibodies for TMSB4XP4 |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat TMSB4XP4 |
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