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TMSB15A Gene

protein-coding   GIFtS: 41
GCID: GC0XM101768

Thymosin Beta 15a

(Previous name: thymosin-like 8)
(Previous symbol: TMSL8)
  See TMSB15A-related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Thymosin Beta 15a1 2     TMSB15B2
TMSL81 2 3     Tb152
Thymosin-Like 81 2     TbNB2
Thymosin-Like Protein 82 3     Thymosin Beta-15A2
TMSNB2 3     Thymosin Beta-15B2
NB Thymosin Beta2 3     Thymosin, Beta, Identified In Neuroblastoma Cells2
TMSB152     

External Ids:    HGNC: 307441   Entrez Gene: 110132   Ensembl: ENSG000001581647   OMIM: 6015875   UniProtKB: P0CG343   

Export aliases for TMSB15A gene to outside databases

Previous GC identifers: GC0XM101657 GC0XM091433


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for TMSB15A Gene:
TMSB15A (thymosin beta 15a) is a protein-coding gene. Diseases associated with TMSB15A include neuroblastoma. GO annotations related to this gene include actin binding. An important paralog of this gene is TMSB15B.

UniProtKB/Swiss-Prot: TB15A_HUMAN, P0CG34
Function: Plays an important role in the organization of the cytoskeleton. Binds to and sequesters actin monomers
(G actin) and therefore inhibits actin polymerization (By similarity)

Gene Wiki entry for TMSB15A Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000023.10  NC_018934.2  NT_011651.18  
Regulatory elements:
   Regulatory transcription factor binding sites in the TMSB15A gene promoter:
         HFH-3   STAT1   AML1a   STAT1beta   CUTL1   POU3F2   STAT1alpha   FOXI1   Chx10   STAT3   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTMSB15A promoter sequence
   Search Chromatin IP Primers for TMSB15A

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat TMSB15A


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xq21.33-q22.3   Ensembl cytogenetic band:  Xq22.1   HGNC cytogenetic band: Xq21.33-q22.3

TMSB15A Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TMSB15A gene location

GeneLoc information about chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XM101768:  view genomic region     (about GC identifiers)

Start:
101,768,604 bp from pter      End:
101,771,712 bp from pter
Size:
3,109 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: TB15A_HUMAN, P0CG34 (See protein sequence)
Recommended Name: Thymosin beta-15A  
Size: 45 amino acids; 5229 Da
Secondary accessions: A8K614 Q99406

Explore the universe of human proteins at neXtProt for TMSB15A: NX_P0CG34

Explore proteomics data for TMSB15A at MOPED


See TMSB15A Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_068832.1  
ENSEMBL proteins: 
 ENSP00000289373  

TMSB15A Human Recombinant Protein Products:

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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2 InterPro protein domains:
 IPR001152 Thymosin_b4
 IPR016323 Thymosin_b4_metazoa

Graphical View of Domain Structure for InterPro Entry P0CG34

ProtoNet protein and cluster: P0CG34

UniProtKB/Swiss-Prot: TB15A_HUMAN, P0CG34
Similarity: Belongs to the thymosin beta family


Find genes that share domains with TMSB15A           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: TB15A_HUMAN, P0CG34
Function: Plays an important role in the organization of the cytoskeleton. Binds to and sequesters actin monomers
(G actin) and therefore inhibits actin polymerization (By similarity)
Induction: Down-regulated by TGFB1

     Gene Ontology (GO): 1 molecular function term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0003779actin binding IEA--
     
Find genes that share ontologies with TMSB15A           About GenesLikeMe


Phenotypes:
     1 GenomeRNAi human phenotype for TMSB15A:
 Decreased circadian period len 

Animal Models:
   inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for TMSB15A
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miRNA
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miRTarBase miRNAs that target TMSB15A:
hsa-mir-26b-5p (MIRT030293)

Block miRNA regulation of human, mouse, rat TMSB15A using miScript Target Protectors
1 qRT-PCR Assays for microRNA that regulate TMSB15A:
hsa-miR-1283
SwitchGear 3'UTR luciferase reporter plasmidTMSB15A 3' UTR sequence
Inhib. RNA
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
TB15A_HUMAN, P0CG34: Cytoplasm, cytoskeleton (By similarity)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
cytosol3
cytoskeleton2
extracellular2
nucleus1

Gene Ontology (GO): 2 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005737cytoplasm IEA--
GO:0005856cytoskeleton IEA--

Find genes that share ontologies with TMSB15A           About GenesLikeMe


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for TMSB15A
Interactions:

    Search GeneGlobe Interaction Network for TMSB15A

STRING Interaction Network Preview (showing 5 interactants - click image to see more details)

5 Interacting proteins for TMSB15A (ENSP000002893734) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
PFN1ENSP000002256554STRING: ENSP00000225655
PFN2ENSP000002399404STRING: ENSP00000239940
PFN3ENSP000003513794STRING: ENSP00000351379
PFN4ENSP000003221704STRING: ENSP00000322170
SCO2ENSP000002527854STRING: ENSP00000252785
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Gene Ontology (GO): 3 biological process terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0007010cytoskeleton organization ----
GO:0030036actin cytoskeleton organization IEA--
GO:0042989sequestering of actin monomers IEA--

Find genes that share ontologies with TMSB15A           About GenesLikeMe



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for TMSB15A (TB15A)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for TMSB15A gene: 
NM_021992.2  

Unigene Cluster for TMSB15A:

Thymosin beta 15a
Hs.56145  [show with all ESTs]
Unigene Representative Sequence: BG471140
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000289373(uc004eje.3)
miRNA
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1 qRT-PCR Assays for microRNA that regulate TMSB15A:
hsa-miR-1283
SwitchGear 3'UTR luciferase reporter plasmidTMSB15A 3' UTR sequence
Inhib. RNA
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OriGene RNAi products in human, mouse, rat for TMSB15A
Predesigned siRNA for gene silencing in human, mouse, rat TMSB15A
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Primer
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  QuantiFast Probe-based Assays in human, mouse, rat TMSB15A

Additional mRNA sequence: 

AF086495.1 AK311771.1 BC000183.1 D82345.1 

2 DOTS entries:

DT.454212  DT.97840003 

Selected AceView cDNA sequences (see all 72):

AW445063 BC000183 AI674986 AA952964 D82345 BF447294 AA706578 AA036683 
BQ896443 BM699211 AI050944 AW511002 NM_021992 AW135562 BI493734 AI571193 
AI122999 BQ890551 AI201015 AF086495 AA485835 AW662785 BI113720 W93771 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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TMSB15A expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: CTTTTGCAGC
TMSB15A Expression
About this image


TMSB15A expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 4) fully expand
 
 Inner Cell Mass (Early Embryonic Tissues)    fully expand to see all 2 entries
         Human embryonic stem cells (family)
 
 Epithelial Cells
         Mature Retinal Pigmented Epithelium Cells Retinal Pigmented Epithelium
 
 Eye (Sensory Organs)
         Mature Retinal Pigmented Epithelium Cells Retinal Pigmented Epithelium
 
 Brain (Nervous System)
TMSB15A Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

TMSB15A Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.56145

UniProtKB/Swiss-Prot: TB15A_HUMAN, P0CG34
Tissue specificity: Neuroblastoma-specific

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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TMSB15A

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for TMSB15A gene from Selected species (see all 6)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
lizard
(Anolis carolinensis)
Reptilia --
Uncharacterized protein
84(a)
1 → many
GL343686.1(76431-76694)
zebrafish
(Danio rerio)
Actinopterygii tmsb4x6
si:ch211-11c15.36
(see all 3)
si:ch211-11c15.3
(see all 3)
66(a)
62(a)
(see all 3)
many ↔ many
many ↔ many
(see all 3)
9(56198178-56199762) ENSDARG00000077777
14(35617038-35619396) ENSDARG00000092970
        Species with no ortholog for TMSB15A

ENSEMBL Gene Tree for TMSB15A (if available)
TreeFam Gene Tree for TMSB15A (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for TMSB15A gene
TMSB15B2  TMSB4Y2  TMSB102  TMSB4X2  
5 SIMAP similar genes for TMSB15A using alignment to 1 protein entry:     TB15A_HUMAN:
TMSB15B    TMSB4X    TMSB10    TMSB4Y    TMSB4XP4

Find genes that share paralogs with TMSB15A           About GenesLikeMe



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for TMSB15A (see all 62)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr X posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs413062751,2
C--101768721(+) CATCAG/TAGCAG 1 -- ut310--------
rs1808588471,2
--101768915(+) GAAGAC/TGCCTA 1 -- ut310--------
rs1457018651,2
--101768916(+) AAGACA/GCCTAA 1 -- ut310--------
rs2013783441,2
C--101769005(+) GAGGCA/GATCCC 1 -- ut310--------
rs2002929461,2
C--101769082(+) TTAACC/G/TGTATG 1 -- int10--------
rs1850647021,2
--101769153(+) ATACAA/TGCCTT 1 -- int10--------
rs1477145791,2
--101769541(+) CCTACA/GTGCAC 1 -- int10--------
rs1398538301,2
--101769567(+) GTTCAC/TTGTCT 1 -- int10--------
rs1498298641,2
C--101769694(+) ACAAAA/GCTAAG 1 -- int10--------
rs1118811081,2
C,F--101769822(+) TTATAC/TAACCC 1 -- int11Minor allele frequency- T:0.00CSA 1

HapMap Linkage Disequilibrium report for TMSB15A (101768604 - 101771712 bp)

Structural Variations
      Database of Genomic Variants (DGV) variations for TMSB15A: --
Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing TMSB15A
DNA2.0 Custom Variant and Variant Library Synthesis for TMSB15A

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 601587    OMIM disorders: --

1 disease for TMSB15A:    
About MalaCards
neuroblastoma


Find genes that share disorders with TMSB15A           About GenesLikeMe


Export disorders for TMSB15A gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for TMSB15A gene, integrated from 10 sources (see all 15):
(articles sorted by number of sources associating them with TMSB15A)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Identification and cloning of neuroblastoma-specific and nerve tissue-specific genes through compiled expression profiles. (PubMed id 9039501)1, 2, 3 Yokoyama M.... Matsubara K. (DNA Res. 1996)
  2. Thymosin beta-NB is the human isoform of rat thymosin beta15. (PubMed id 17567946)1, 3, 9 Banyard J....Zetter B.R. (Ann. N. Y. Acad. Sci. 2007)
  3. Differential regulation of human thymosin beta 15 isoforms by transforming growth factor beta 1. (PubMed id 19296525)1, 2, 9 Banyard J.... Zetter B.R. (Genes Chromosomes Cancer 2009)
  4. The DNA sequence of the human X chromosome. (PubMed id 15772651)1, 2 Ross M.T.... Bentley D.R. (Nature 2005)
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  6. Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. (PubMed id 12665801)1, 2 Gevaert K.... Vandekerckhove J. (Nat. Biotechnol. 2003)
  7. Thymosin beta 15A (TMSB15A) is a predictor of chemotherapy response in triple-negative breast cancer. (PubMed id 23079573)1 Darb-Esfahani S....Loibl S. (Br. J. Cancer 2012)
  8. Expression and subcellular localization of thymosin beta15 following kainic acid treatment in rat brain. (PubMed id 18452710)1 Kim Y.W....Kim H. (Biochem. Biophys. Res. Commun. 2008)
  9. Elevated thymosin beta15 expression is associated with progression and metastasis of non-small cell lung cancer. (PubMed id 18754322)1 Gu Y.M....Wang E.H. (APMIS 2008)
  10. Exquisite sensitivity of TP53 mutant and basal breast cancers to a dose-dense epirubicin-cyclophosphamide regimen. (PubMed id 17388661)1 Bertheau P....de ThAc H. (PLoS Med. 2007)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 11013 HGNC: 30744 AceView: TMSNB Ensembl:ENSG00000158164 euGenes: HUgn11013
ECgene: TMSB15A H-InvDB: TMSB15A

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for TMSB15A Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for TMSB15A gene:
Search GeneIP for patents involving TMSB15A

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014

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