Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TMPRSS4-AS1 Gene

Subcategory (RNA class) for TMPRSS4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TMPRSS4-AS1 Gene

  • TMPRSS4 Antisense RNA 1 2 3 5
  • TMPRSS4 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TMPRSS4-AS1 Gene

Previous GeneCards Identifiers for TMPRSS4-AS1 Gene

  • GC11M117887

Summaries for TMPRSS4-AS1 Gene

GeneCards Summary for TMPRSS4-AS1 Gene

TMPRSS4-AS1 (TMPRSS4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMPRSS4-AS1 Gene

Genomics for TMPRSS4-AS1 Gene

Regulatory Elements for TMPRSS4-AS1 Gene

Enhancers for TMPRSS4-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F118088 1.1 Ensembl ENCODE 0.8 -0.4 -435 1.3 ELF3 HDAC1 LEF1 IRF2 NFRKB TAL1 MAX RARA TEAD3 ZNF316 CD3E SCN4B TMPRSS4-AS1 LOC105369517
GH11F118082 1.1 Ensembl ENCODE 0.8 +4.4 4373 2.7 HDGF HDAC1 PKNOX1 RARA ZNF766 ZEB2 NR2F2 SMARCA4 PBX2 ETV4 SCN4B TMPRSS13 IL10RA JAML TMPRSS4-AS1 TMPRSS4
GH11F118091 0.8 ENCODE 0.8 -4.2 -4151 2.4 SOX13 HDAC1 DMAP1 THRB ZNF644 RARA NCOR1 NR2F6 CREM ZNF652 CD3E SCN4B TMPRSS4-AS1 LOC105369517
GH11F118074 1.3 Ensembl ENCODE 0.4 +10.9 10916 5.4 ATF1 PKNOX1 SIN3A ZNF2 GLIS2 ZNF766 GATA2 ZNF143 ZNF207 FOS LOC101929133 LOC653303 RNF214 SCN4B TMPRSS13 TMPRSS4 TMPRSS4-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TMPRSS4-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TMPRSS4-AS1 Gene

Chromosome:
11
Start:
118,003,634 bp from pter
End:
118,088,299 bp from pter
Size:
84,666 bases
Orientation:
Minus strand

Genomic View for TMPRSS4-AS1 Gene

Genes around TMPRSS4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMPRSS4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMPRSS4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMPRSS4-AS1 Gene

Proteins for TMPRSS4-AS1 Gene

  • Protein details for TMPRSS4-AS1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GVV1
    Recommended name:
    Protein TMPRSS4-AS1
    Protein Accession:
    A0A1B0GVV1

    Protein attributes for TMPRSS4-AS1 Gene

    Size:
    85 amino acids
    Molecular mass:
    9379 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TMPRSS4-AS1 Gene

Post-translational modifications for TMPRSS4-AS1 Gene

No Post-translational modifications

Other Protein References for TMPRSS4-AS1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TMPRSS4-AS1 Gene

Domains & Families for TMPRSS4-AS1 Gene

Protein Domains for TMPRSS4-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TMPRSS4-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMPRSS4-AS1 Gene

Function for TMPRSS4-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMPRSS4-AS1 Gene

Localization for TMPRSS4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TMPRSS4-AS1 Gene

Pathways & Interactions for TMPRSS4-AS1 Gene

SuperPathways for TMPRSS4-AS1 Gene

No Data Available

Interacting Proteins for TMPRSS4-AS1 Gene

Gene Ontology (GO) - Biological Process for TMPRSS4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMPRSS4-AS1 Gene

Transcripts for TMPRSS4-AS1 Gene

mRNA/cDNA for TMPRSS4-AS1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TMPRSS4-AS1 Gene

No ASD Table

Relevant External Links for TMPRSS4-AS1 Gene

GeneLoc Exon Structure for
TMPRSS4-AS1
ECgene alternative splicing isoforms for
TMPRSS4-AS1

Expression for TMPRSS4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TMPRSS4-AS1 Gene

SOURCE GeneReport for Unigene cluster for TMPRSS4-AS1 Gene:

Hs.627426
genes like me logo Genes that share expression patterns with TMPRSS4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TMPRSS4-AS1 Gene

Orthologs for TMPRSS4-AS1 Gene

Evolution for TMPRSS4-AS1 Gene

ENSEMBL:
Gene Tree for TMPRSS4-AS1 (if available)
TreeFam:
Gene Tree for TMPRSS4-AS1 (if available)

No data available for Orthologs for TMPRSS4-AS1 Gene

Paralogs for TMPRSS4-AS1 Gene

No data available for Paralogs for TMPRSS4-AS1 Gene

Variants for TMPRSS4-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMPRSS4-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10160375 -- 118,083,535(+) GCTCC(C/T)TCCCA intron-variant
rs10219396 -- 118,057,051(+) GGTCT(A/G)GCCAC intron-variant
rs10431040 -- 118,027,750(+) GGGAG(A/G)CACAC intron-variant
rs10431083 -- 118,027,440(+) ACCCA(A/G)TTCAC intron-variant
rs10444335 -- 118,045,157(+) TTCTA(A/G)GCCCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMPRSS4-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv556464 CNV gain 21841781
nsv556463 CNV loss 21841781
nsv509444 CNV insertion 20534489
nsv468878 CNV gain 19166990
nsv1159938 CNV duplication 26073780
nsv1049373 CNV loss 25217958
esv998313 CNV insertion 20482838
esv3892103 CNV gain 25118596
esv3579922 CNV loss 25503493

Relevant External Links for TMPRSS4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMPRSS4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMPRSS4-AS1 Gene

Disorders for TMPRSS4-AS1 Gene

Relevant External Links for TMPRSS4-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMPRSS4-AS1

No disorders were found for TMPRSS4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMPRSS4-AS1 Gene

Publications for TMPRSS4-AS1 Gene

No publications were found for TMPRSS4-AS1 Gene.

Products for TMPRSS4-AS1 Gene

Sources for TMPRSS4-AS1 Gene

Content
Loading form....