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Aliases & Descriptions for TMPRSS2
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase, and/or 9Nature:405,311-319 and CroW21) About This Section
|
| Aliases |
|---|
| EC 3.4.21.- 3 | | FLJ41954 2 | | PP9284 2 | | PRSS10 1, 2, 3 | | epitheliasin 2 |
| | | Descriptions |
|---|
| Serine protease 10 3 | | transmembrane protease, serine 2 2 | | transmembrane protease, serine 2, EC 3.4.21 9 |
|
| | Search outside databases for aliases for TMPRSS2 genePrevious GC identifers: GC21M039410 GC21M041757 GC21M041756 |
Summaries for TMPRSS2(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for TMPRSS2: This gene encodes a protein that belongs to the serine protease family. The encoded protein contains a type II transmembrane domain, a receptor class A domain, a scavenger receptor cysteine-rich domain and a protease domain. Serine proteases are known to be involved in many physiological and pathological processes. This gene was demonstrated to be up-regulated by androgenic hormones in prostate cancer cells and down-regulated in androgen-independent prostate cancer tissue. The protease domain of this protein is thought to be cleaved and secreted into cell media after autocleavage. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq] Gene Wiki entry for TMPRSS2 |
Genomic Location for TMPRSS2
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences, Whole Chromsome Sequence According to
Nature (Cited Here with Permission):405,311-319 and CroW21) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 21q22.3 Ensembl cytogenetic band: 21q22.3 HGNC cytogenetic band: 21q22.3 Nature(405: 311-319) cytogenetic band: 21q22.3 | TMPRSS2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 |
| GC21M041750: |
GeneLoc |
Nature:405,311-319 |
Start:
|
41,758,351 bp from pter |
28,410,553 bp from centromere |
End:
|
41,801,948 bp from pter |
28,443,714 bp from centromere |
Size:
|
43,598 bases |
33,162 bases |
Orientation:
|
minus strand |
minus strand |
RefSeq DNA sequence:- NC_000021.7 NT_011512.10
Proteins for TMPRSS2
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: TMPS2_HUMAN, O15393 (See
protein sequence)Recommended Name: Transmembrane protease, serine 2 precursor Size: 492 amino acids; 53859 Da
Subcellular location: Cell membrane; Single-pass type II membrane protein
Subcellular location: Transmembrane protease, serine 2 catalytic chain: Secreted. Note=Activated by cleavage and secreted
Secondary accessions: Q6GTK7 Q9BXX1REFSEQ proteins (2 alternative transcripts):
NP_001128571.1 NP_005647.3
ENSEMBL proteins: ENSP00000381588 ENSP00000330330
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for TMPRSS2: Assays for TMPRSS2: | Protein
Domains/ Families for TMPRSS2(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry O15393
ProtoNet protein and cluster: O15393 4 Blocks protein families: IPB001190 Speract/scavenger receptor IPB001254 Serine protease IPB001314 Chymotrypsin serine protease family (S1) signature IPB002172 Low density lipoprotein-receptor
UniProtKB/Swiss-Prot: TMPS2_HUMAN, O15393Similarity: Belongs to the peptidase S1 familySimilarity: Contains 1 LDL-receptor class A domainSimilarity: Contains 1 peptidase S1 domainSimilarity: Contains 1 SRCR domain | Gene Function for TMPRSS2
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005656
Applied Biosystems Silencer® siRNAs for TMPRSS2
Sigma-Aldrich siRNA and siRNA Panels for TMPRSS2  Sigma-Aldrich shRNA for TMPRSS2  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005656                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005656                                  untagged cDNA clones in CMV expression vector (see all 4): NM_005656 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005656
Genatlas biochemistry entry for TMPRSS2:transmembrane protein,type II,strongly expressed in small intestine and in normal or carcinoid cells of epithelial prostate,homologous to the enteropeptidase gene,potentially involved in prostate carcinogenesis1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Tmprss2):
3 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0004252 | serine-type endopeptidase activity |
IEA | -- | | GO:0005044 | scavenger receptor activity |
IEA | -- | | GO:0008233 | peptidase activity |
IEA | -- | About this table | Pathways & Interactions for TMPRSS2
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for TMPRSS2 
5/12 Interacting proteins for TMPRSS2 (ENSP000003303303) via UniProtKB, MINT, and/or STRING (see all 12
)About this table
1 Gene Ontology (GO) biological process term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006508 | proteolysis |
IEA | -- | About this table
|
Drugs & Compounds for TMPRSS2(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for TMPRSS2 1 Novoseek chemical compound relationship for TMPRSS2 gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| rubin |
71.73 |
2 |
17826676 (1), 17826677 (1) |
About this table
|
Transcripts for TMPRSS2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005656
Sigma-Aldrich siRNA and siRNA Panels for TMPRSS2  Sigma-Aldrich shRNA for TMPRSS2  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_005656 REFSEQ mRNAs for TMPRSS2 gene (2 alternative transcripts): NM_001135099.1 NM_005656.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005656               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005656                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005656                                  untagged cDNA clones in CMV expression vector (see all 4): NM_005656  Additional cDNA sequence: AF123453.1 AF270487.1 AF329454.1 AK092554.1 AK123948.1 AK222784.1 AK291813.1 AK296860.1 AK313338.1 BC015819.1 BC035623.1 BC051839.1 DQ204771.1 EU090249.1 U75329.1 18 DOTS entries: DT.212263 DT.101982015 DT.100755214 DT.91757425 DT.86850243 DT.101982291 DT.91750049 DT.99997274 DT.101972563 DT.100682811 DT.121131591 DT.121131632 DT.40126200 DT.101982290 DT.121131617 DT.95273880 DT.95273881 DT.121131588 24/153 AceView cDNA sequences (see all 153
):BE857738 BM829557 CB989588 CB156146 AA904080 BQ083899 BQ082736 AF270487 BM747154 BX099916 CK430020 AA515387 AI668954 BM771081 BF001767 AI289207 CF145271 BU930003 BI761763 BM126828 BX508867 BF940659 AA225818 AW025029
highest scoring ESTs for TMPRSS2:AF270487 AF329454 AI826806 AU099721 BC035623 BC051839 BI761763 BX508867 CF145271 CF147031 Unigene Cluster for TMPRSS2: Transmembrane protease, serine 2 Hs.439309 [show with all ESTs]Unigene Representative Sequence: AF329454
GeneLoc Exon Structure
5/11 Alternative Splicing Database (ASD) splice patterns (SP) for TMPRSS2 (see all 11
)
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b | · | 4c | ^ | 5 | ^ | 6 | ^ | 7a | · | 7b | ^ | 8 | ^ | 9a | · | 9b | ^ | 10a | · | 10b | · | 10c | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | ^ | 15 | ^ | 16a | · | 16b | · | 16c | ^ | 17a | · | |
| SP1: | |   | |   | - |   | - |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |
| SP2: | |   | |   | |   | |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | - |   | - |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 17b | · | 17c | ^ | 18a | · | 18b | · | 18c | |
| SP1: | |   | - |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for TMPRSS2
2 Ensembl transcripts including schematic representations: ENST00000398585
ENST00000332149
|
Expression for TMPRSS2
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| TMPRSS2 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for TMPRSS2
1 / 2 / 3 8 probe-sets matching TMPRSS2 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CAAATAAATT
SOURCE GeneReport for Unigene cluster: Hs.439309
Expression variation in blood from EXPOLDB for TMPRSS2 UniProtKB/Swiss-Prot: TMPS2_HUMAN, O15393Tissue specificity: Expressed strongly in small intestine. Also expressed in prostate, colon, stomach and salivary gland |
Orthologs for TMPRSS2
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for TMPRSS2 gene from 5/10 species (see all 10
)
About this table Species with no ortholog for TMPRSS2
ENSEMBL Gene Tree for TMPRSS2 | Paralogs for TMPRSS2(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for TMPRSS2 gene
- TMPRSS32 TMPRSS42 TMPRSS132
|
SNPs/Variants for TMPRSS2(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for TMPRSS2 (up to first 250kb)
|
Disorders & Mutations for TMPRSS2
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 602060
6 Novoseek disease relationships for TMPRSS2 gene
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| prostate cancer |
78.39 |
127 |
17334343 (6), 18519769 (6), 18500259 (6), 17172822 (5) (see all 48) |
| carcinoma |
33.93 |
1 |
18550704 (1) |
| cancer |
29.85 |
7 |
18338334 (2), 17079440 (1), 11745466 (1), 18794177 (1) (see all 6) |
| tumors |
26.85 |
13 |
18500259 (2), 17079440 (1), 18385909 (1), 17334351 (1) (see all 8) |
| chromosomal aberrations |
15.70 |
1 |
17334343 (1) |
| metastasis |
14.64 |
6 |
18338334 (2), 18385909 (2) |
About this table
Genetic Association Database: TMPRSS2 Human Genome Epidemiology Navigator: TMPRSS2 (3 documents)
|
Medical News for TMPRSS2(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for TMPRSS2 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/92 PubMed articles for TMPRSS2 gene (see all 92
):- Cloning of the TMPRSS2 gene, which encodes a novel serine protease with transmembrane, LDLRA, and SRCR domains and maps to 21q22.3. (PubMed id 9325052)1, 2, 3, 4 Paoloni-Giacobino A....Antonarakis S.E. (1997)
- Expression of transmembrane serine protease TMPRSS2 in mouse and human tissues. (PubMed id 11169526)1, 3, 4 Vaarala M.H.... Vihko P.T. (2001)
- Met160Val polymorphism in the TRMPSS2 gene and risk of prostate cancer in a population-based case-control study. (PubMed id 15065083)1, 3, 6 Lubieniecka J.M....Ostrander E.A. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Catalytic cleavage of the androgen-regulated TMPRSS2 protease results in its secretion by prostate and prostate cancer epithelia. (PubMed id 11245484)3, 4 Afar D.E.H.... Jakobovits A. (2001)
- Mutation analyses of 268 candidate genes in human tumor cell lines. (PubMed id 11414763)3, 4 Teng D.-H.... Wong A.K.C. (2001)
- Detection of TMPRSS2:ERG fusion gene in circulating prostate cancer cells. (PubMed id 18385909)1, 3 Mao X....Lu Y.J. (2008)
- TMPRSS2:ERG fusion identifies a subgroup of prostate cancers with a favorable prognosis. (PubMed id 18519769)1, 3 Saramaki O.R....Visakorpi T. (2008)
- Characterization of TMPRSS2:ETV5 and SLC45A3:ETV5 gene fusions in prostate cancer. (PubMed id 18172298)1, 3 Helgeson B.E....Chinnaiyan A.M. (2008)
- Cloning and characterization of the cDNA and gene for human epitheliasin. (PubMed id 11322890)1, 3 Jacquinet E....Hoidal J.R. (2001)
|
Search for TMPRSS2
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing TMPRSS2
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing TMPRSS2
(According to HUGE)
About This Section
| -- |
Specialized Databases showing TMPRSS2(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for TMPRSS2(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for TMPRSS2:

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Incremental update: 13 Oct 2009
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