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TMPRSS2 Gene

protein-coding   GIFtS: 65

GC21M041750
transmembrane protease, serine 2
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase, and/or 9Nature:405,311-319 and CroW21)
About This Section

Aliases
EC 3.4.21.- 3
FLJ41954 2
PP9284 2
PRSS10 1, 2, 3
epitheliasin 2
Descriptions
Serine protease 10 3
transmembrane protease, serine 2 2
transmembrane protease, serine 2, EC 3.4.21 9
External Ids
HGNC: 118761
Entrez Gene: 71132
UniProtKB: O153933
Ensembl: ENSG000001840127
Search outside databases for aliases for TMPRSS2 gene

Previous GC identifers: GC21M039410 GC21M041757 GC21M041756

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for TMPRSS2:
This gene encodes a protein that belongs to the serine protease family. The encoded protein
contains a type II transmembrane domain, a receptor class A domain, a scavenger receptor
cysteine-rich domain and a protease domain. Serine proteases are known to be involved in many
physiological and pathological processes. This gene was demonstrated to be up-regulated by
androgenic hormones in prostate cancer cells and down-regulated in androgen-independent prostate
cancer tissue. The protease domain of this protein is thought to be cleaved and secreted into cell
media after autocleavage. Alternatively spliced transcript variants encoding different isoforms
have been found for this gene. [provided by RefSeq]

Gene Wiki entry for TMPRSS2
(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences, Whole Chromsome Sequence According to Nature (Cited Here with Permission):405,311-319 and CroW21)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 21q22.3   Ensembl cytogenetic band:  21q22.3   HGNC cytogenetic band: 21q22.3
Nature(405: 311-319) cytogenetic band:   21q22.3
TMPRSS2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
GeneLoc gene densities for chromosome 21         GeneLoc Exon Structure

(about GC identifiers)
GC21M041750:   GeneLoc Nature:405,311-319
Start:
41,758,351 bp from pter       28,410,553 bp from centromere
End:
41,801,948 bp from pter 28,443,714 bp from centromere
Size:
43,598 bases 33,162 bases
Orientation:
minus strand minus strand
RefSeq DNA sequence:
NC_000021.7  NT_011512.10  

Whole chromosome sequencing:
cDNA sequence: U75329
genomic clones: Q87D5 to CIT2533B8

(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: TMPS2_HUMAN, O15393 (See protein sequence)
Recommended Name: Transmembrane protease, serine 2 precursor  
Size: 492 amino acids; 53859 Da
Subcellular location: Cell membrane; Single-pass type II membrane protein
Subcellular location: Transmembrane protease, serine 2 catalytic chain: Secreted. Note=Activated by
cleavage and secreted
Secondary accessions: Q6GTK7 Q9BXX1

REFSEQ proteins (2 alternative transcripts): 
NP_001128571.1  NP_005647.3  


ENSEMBL proteins: 
ENSP00000381588 ENSP00000330330 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (TMPRSS2)
Human Recombinant Proteins from Abnova (TMPRSS2)
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

3 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005576 extracellular region IEA--
GO:0005886 plasma membrane IEA--
GO:0005887 integral to plasma membrane TAS9325052
About this table

Antibodies for TMPRSS2: 
Browse Antibodies Central at Invitrogen
Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
Sigma-Aldrich Antibodies for TMPRSS2
Browse R&D Systems for Antibodies
Antibodies from Abcam (TMPRSS2), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (TMPRSS2)
Novus Biologicals Antibody for TMPRSS2

Assays for TMPRSS2: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

5/6 InterPro domains/families (see all 6 ):
 IPR002172 LDL_rcpt_classA_cys-rich
 IPR001314 Peptidase_S1A
 IPR001190 Srcr_rcpt
 IPR017448 Srcr_rcpt-rel
 IPR001254 Peptidase_S1_S6


   GeneDecks  TMPRSS2 for the domains selected above  
About GeneDecksing

Graphical View of Domain Structure for InterPro Entry O15393

ProtoNet protein and cluster: O15393

4 Blocks protein families:
IPB001190 Speract/scavenger receptor
IPB001254 Serine protease
IPB001314 Chymotrypsin serine protease family (S1) signature
IPB002172 Low density lipoprotein-receptor


UniProtKB/Swiss-Prot: TMPS2_HUMAN, O15393
Similarity: Belongs to the peptidase S1 family
Similarity: Contains 1 LDL-receptor class A domain
Similarity: Contains 1 peptidase S1 domain
Similarity: Contains 1 SRCR domain

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (TMPRSS2)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (TMPRSS2)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005656

              Applied Biosystems Silencer® siRNAs for TMPRSS2

              Sigma-Aldrich siRNA and siRNA Panels for TMPRSS2  
                     Sigma-Aldrich shRNA for TMPRSS2  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for TMPRSS2
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005656
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_005656
                                 untagged cDNA clones in CMV expression vector (see all 4): NM_005656 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_005656

Genatlas biochemistry entry for TMPRSS2:
transmembrane protein,type II,strongly expressed in small intestine and in normal or carcinoid
cells of epithelial prostate,homologous to the enteropeptidase gene,potentially involved in
prostate carcinogenesis

1 MGI mutant phenotype (inferred from 1 allele(MGI details for Tmprss2):

normal

3 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0004252 serine-type endopeptidase activity IEA--
GO:0005044 scavenger receptor activity IEA--
GO:0008233 peptidase activity IEA--
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section


 Gene Network CentralTM Interacting Genes and Proteins Network for  TMPRSS2 


5/12 Interacting proteins for TMPRSS2 (ENSP000003303303) via UniProtKB, MINT, and/or STRING (see all 12 )
InteractantInteraction Details
GeneCardExternal ID(s)
ARENSP000003638223STRING (score=.979)
ETV1ENSP000002420663STRING (score=.961)
SLC45A3ENSP000003561133STRING (score=.933)
C15orf21ENSP000003133993STRING (score=.929)
HNRNPA2B1ENSP000003466943STRING (score=.918)
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1 Gene Ontology (GO) biological process term (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0006508 proteolysis IEA--
About this table
(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for TMPRSS2
1 Novoseek chemical compound relationship for TMPRSS2 gene
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
rubin 71.73 2 17826676 (1), 17826677 (1)
About this table


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (TMPRSS2)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (TMPRSS2)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005656

              Sigma-Aldrich siRNA and siRNA Panels for TMPRSS2  
                     Sigma-Aldrich shRNA for TMPRSS2  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_005656  

REFSEQ mRNAs for TMPRSS2 gene (2 alternative transcripts): 

NM_001135099.1   NM_005656.3   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_005656  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005656
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_005656
                                 untagged cDNA clones in CMV expression vector (see all 4): NM_005656 

Additional cDNA sequence: 

AF123453.1 AF270487.1 AF329454.1 AK092554.1 AK123948.1 AK222784.1 AK291813.1 AK296860.1 
AK313338.1 BC015819.1 BC035623.1 BC051839.1 DQ204771.1 EU090249.1 U75329.1 

18 DOTS entries:

DT.212263  DT.101982015  DT.100755214  DT.91757425  DT.86850243  DT.101982291  DT.91750049  DT.99997274 
DT.101972563  DT.100682811  DT.121131591  DT.121131632  DT.40126200  DT.101982290  DT.121131617  DT.95273880 
DT.95273881  DT.121131588 

24/153 AceView cDNA sequences (see all 153 ):

BE857738 BM829557 CB989588 CB156146 AA904080 BQ083899 BQ082736 AF270487 
BM747154 BX099916 CK430020 AA515387 AI668954 BM771081 BF001767 AI289207 
CF145271 BU930003 BI761763 BM126828 BX508867 BF940659 AA225818 AW025029 

highest scoring ESTs for TMPRSS2:

AF270487 AF329454 AI826806 AU099721 BC035623 BC051839 BI761763 BX508867 CF145271 CF147031 

Unigene Cluster for TMPRSS2:

Transmembrane protease, serine 2
Hs.439309  [show with all ESTs]
Unigene Representative Sequence: AF329454


GeneLoc Exon Structure

5/11 Alternative Splicing Database (ASD) splice patterns (SP) for TMPRSS2 (see all 11 )

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9a · 9b ^ 10a · 10b · 10c ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16a · 16b · 16c ^ 17a ·
SP1:              -     -     -     -     -     -                                                                                         -                 -   
SP2:                          -     -     -     -                                                                                                               
SP3:                                                                                                                                                            
SP4:                                                                          -     -                                                                           
SP5:              -     -     -     -     -     -                             -     -                                                                           

ExUns: 17b · 17c ^ 18a · 18b · 18c
SP1:        -                     
SP2:                              
SP3:                              
SP4:                              
SP5:                              

About this scheme

ECgene alternative splicing isoforms for TMPRSS2

2 Ensembl transcripts including schematic representations:
ENST00000398585  ENST00000332149  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

TMPRSS2 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for TMPRSS2

1 / 2 / 3

8 probe-sets matching TMPRSS2 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
34996_at2, 3 U95-A 2 1.00 0.97 0.99 0.75 U75329 0.80 1.00 0.91 1

63329_at2, 3 U95-C 1 0.62 1.00 0.99 1.26 AI826806 0.80 1.00 0.91 1

211689_s_at2, 3 U133-A 1 1.00 1.00 -- -- AF270487 0.80 1.00 0.91 1

205102_at2, 3 U133-A 1 1.00 1.00 -- -- NM_005656 0.60 1.00 0.82 1

226553_at2, 3 U133-B 1 0.73 1.00 -- -- AI660243 0.60 1.00 0.82 1

211689_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

205102_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

226553_at2 U133Plus2 1 0.73 1.00 -- -- -- -- -- -- --
GeneDecks  TMPRSS2 for binary patterns associated with the probe-sets selected above  
About GeneDecksing
About this table    
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: CAAATAAATT

SOURCE GeneReport for Unigene cluster: Hs.439309

Expression variation in blood from EXPOLDB for TMPRSS2

UniProtKB/Swiss-Prot: TMPS2_HUMAN, O15393
Tissue specificity: Expressed strongly in small intestine. Also expressed in prostate, colon,
stomach and salivary gland

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for TMPRSS2 gene from 5/10 species (see all 10 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
chimpanzee
(Pan troglodytes)
TMPRSS21   -- transmembrane protease, serine 2 99.05(n)
97.76(a)
474007  XM_001172064.1  XP_001172064.1 
cow
(Bos taurus)
TMPRSS21   -- transmembrane protease, serine 2 82.21(n)
78.53(a)
511037  XM_588291.3  XP_588291.3 
rat
(Rattus norvegicus)
Tmprss21   -- transmembrane protease, serine 2 77.71(n)
78.32(a)
156435  NM_130424.2  NP_569108.2 
mouse
(Mus musculus)
Tmprss21, 5 16 (20.65 cM)5
transmembrane protease, serine 21, 5 77.51(n)1
78.53(a)1
505281  NM_015775.21  NP_056590.21 
 AF1135965  AF1993625  (see all 20)
chicken
(Gallus gallus)
TMPRSS21   -- transmembrane protease, serine 2 62.33(n)
60.17(a)
418528  XM_416737.2  XP_416737.2 
About this table        Species with no ortholog for TMPRSS2

ENSEMBL Gene Tree for TMPRSS2
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for TMPRSS2 gene
TMPRSS32  TMPRSS42  TMPRSS132  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/325 NCBI SNPs in TMPRSS2 are shown (see all 325 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 138)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 21 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs4562981,2
A,C,F,H,O41758621(+) TTGCAA/TGACTT 1 -- ut3113Minor allele frequency- T:0.36MN NA EU EA WA 1122
rs4561421,2
A,C,F,H,O41758366(+) AAAATT/CGCATA 1 -- ut315Minor allele frequency- C:0.49NA MN EA WA 487
rs4624711,2
A,C,F,H41758346(+) GCAGTG/AGTTAC 1 -- ng517Minor allele frequency- A:0.38NA EA WA 452
rs28380381,2
C,F,H,O41758555(+) TTCCAA/TGGTCC 1 -- ut31 ese38Minor allele frequency- T:0.08NA EU EA WA 575
rs4625741,2
A,C,F,H41758599(+) CAGACG/AGATCC 1 -- ut3111Minor allele frequency- A:0.27NA EU EA WA 851
rs81276741,2
A,C,F,H41803873(+) CTTTCA/GGCGGC 1 -- ng314Minor allele frequency- G:0.25EU EA WA 416
rs126273741,2
C,F,H41759561(+) CATGTC/TTCTCC 1 -- ut31 trp34Minor allele frequency- T:0.04EU EA WA 420
rs123297601,2
C,F,H41774367(+) GTACAC/TCTGAA 1 V/M mis1 ese34Minor allele frequency- T:0.29EU EA WA 420
rs119106781,2
C,F,H41758856(+) TTTGCT/CTCAGC 1 -- ut3111Minor allele frequency- C:0.06NA EU EA WA 980
rs124819841,2
C,F41802764(+) actggT/Ctatgt 1 -- ng311Minor allele frequency- C:0.31NA 90
About this table

HapMap Linkage Disequilibrium images for TMPRSS2 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 602060

6 Novoseek disease relationships for TMPRSS2 gene

Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
prostate cancer 78.39 127 17334343 (6), 18519769 (6), 18500259 (6), 17172822 (5) (see all 48)
carcinoma 33.93 1 18550704 (1)
cancer 29.85 7 18338334 (2), 17079440 (1), 11745466 (1), 18794177 (1) (see all 6)
tumors 26.85 13 18500259 (2), 17079440 (1), 18385909 (1), 17334351 (1) (see all 8)
chromosomal aberrations 15.70 1 17334343 (1)
metastasis 14.64 6 18338334 (2), 18385909 (2)
About this table

Genetic Association Database: TMPRSS2
Human Genome Epidemiology Navigator: TMPRSS2 (3 documents)

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/92 PubMed articles for TMPRSS2 gene (see all 92 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 7113 HGNC: 11876 AceView: TMPRSS2 Ensembl:ENSG00000184012 euGenes: HUgn7113
ECgene: TMPRSS2 H-InvDB: TMPRSS2
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

NameDescription
ATLAS Chromosomes in Cancer entry for TMPRSS2 Genetics and Cytogenetics in Oncology and Haematology
(Available from WIS Yeda, Salk, Tufts)
About This Section

  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for TMPRSS2:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



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 Predesigned and custom siRNAs for TMPRSS2 Antibodies for TMPRSS2
 Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
 Lentivirus-delivered shRNAs for TMPRSS2 Browse small molecules at Sigma-Aldrich
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