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TMPRSS11F Gene

protein-coding   GIFtS: 38
GCID: GC04M068918

Transmembrane Protease, Serine 11F

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Transmembrane Protease, Serine 11F1 2     HATL43
Airway Trypsin-Like Protease 42 3     EC 3.4.218
Transmembrane Protease Serine 11F2     EC 3.4.21.428
EC 3.4.21.-3     

External Ids:    HGNC: 299941   Entrez Gene: 3892082   Ensembl: ENSG000001980927   UniProtKB: Q6ZWK63   

Export aliases for TMPRSS11F gene to outside databases

Previous GC identifers: GC04M068748 GC04M068601 GC04M064834


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for TMPRSS11F Gene:
TMPRSS11F (transmembrane protease, serine 11F) is a protein-coding gene. GO annotations related to this gene include serine-type endopeptidase activity. An important paralog of this gene is TMPRSS11D.

UniProtKB/Swiss-Prot: TM11F_HUMAN, Q6ZWK6
Function: Probable serine protease (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the TMPRSS11F gene promoter:
         LHX3b/Lhx3b   FOXF2   Brachyury   STAT5A   CUTL1   Gfi-1   LHX3a/Lhx3a   FOXO1a   Cart-1   FOXO1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTMPRSS11F promoter sequence
   Search Chromatin IP Primers for TMPRSS11F

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat TMPRSS11F


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q13.2   Ensembl cytogenetic band:  4q13.2   HGNC cytogenetic band: 4q13.2

TMPRSS11F Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TMPRSS11F gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04M068918:  view genomic region     (about GC identifiers)

Start:
68,918,916 bp from pter      End:
68,995,598 bp from pter
Size:
76,683 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: TM11F_HUMAN, Q6ZWK6 (See protein sequence)
Recommended Name: Transmembrane protease serine 11F  
Size: 438 amino acids; 49410 Da
Secondary accessions: A8MXX2

Explore the universe of human proteins at neXtProt for TMPRSS11F: NX_Q6ZWK6

Explore proteomics data for TMPRSS11F at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus
  • Selected DME Specific Peptides for TMPRSS11F (Q6ZWK6) (see all 5)
     GDSGGPL  WIASKTG  CKGDSGG  DIALVQL 


    See TMPRSS11F Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_997290.2  
    ENSEMBL proteins: 
     ENSP00000348639  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    TMPRSS: Serine peptidases / Transmembrane

    Selected InterPro protein domains (see all 6):
     IPR001314 Peptidase_S1A
     IPR000082 SEA_dom
     IPR017329 Pept_S1A_HAT/DESC1
     IPR009003 Trypsin-like_Pept_dom
     IPR001254 Peptidase_S1

    Graphical View of Domain Structure for InterPro Entry Q6ZWK6

    ProtoNet protein and cluster: Q6ZWK6

    3 Blocks protein domains:
    IPB000082 SEA domain
    IPB001254 Serine protease
    IPB001314 Chymotrypsin serine protease family (S1) signature


    UniProtKB/Swiss-Prot: TM11F_HUMAN, Q6ZWK6
    Similarity: Belongs to the peptidase S1 family
    Similarity: Contains 1 peptidase S1 domain
    Similarity: Contains 1 SEA domain


    Find genes that share domains with TMPRSS11F           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: TM11F_HUMAN, Q6ZWK6
    Function: Probable serine protease (By similarity)

         Enzyme Numbers (IUBMB): EC 3.4.212 EC 3.4.21.422 EC 3.4.21.-1

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003824catalytic activity ----
    GO:0004252serine-type endopeptidase activity IEA--
         
    Find genes that share ontologies with TMPRSS11F           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for TMPRSS11F:
     High actin ratio cells 

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for TMPRSS11F

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    TM11F_HUMAN, Q6ZWK6: Membrane; Single-pass type II membrane protein (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    extracellular2
    plasma membrane2
    cytosol1
    endoplasmic reticulum1
    golgi apparatus1
    mitochondrion1

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region IEA--
    GO:0005887integral component of plasma membrane IEA--

    Find genes that share ontologies with TMPRSS11F           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for TMPRSS11F
    Interactions:

        Search GeneGlobe Interaction Network for TMPRSS11F

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006508proteolysis ----

    Find genes that share ontologies with TMPRSS11F           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for TMPRSS11F (TM11F)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for TMPRSS11F gene: 
    NM_207407.2  

    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000356291(uc003hdt.1)
    miRNA
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    hsa-miR-31 hsa-miR-136 hsa-miR-489 hsa-miR-516a-3p hsa-miR-3662 hsa-miR-516b*
    SwitchGear 3'UTR luciferase reporter plasmidTMPRSS11F 3' UTR sequence
    Inhib. RNA
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      QuantiFast Probe-based Assays in human, mouse, rat TMPRSS11F

    4 AceView cDNA sequences:

    CA390379 AK122625 NM_207407 BF367386 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    TMPRSS11F expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TTGTGTTGTT
    TMPRSS11F Expression
    About this image

    TMPRSS11F Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    TMPRSS11F Protein Expression
        Custom PCR Arrays for TMPRSS11F
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for TMPRSS11F gene from Selected species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Tmprss11f1 , 5 transmembrane protease, serine 11f1, 5 85.84(n)1
    86.99(a)1
      5 (43.56 cM)5
    2430831  NM_178730.31  NP_848845.11 
     865218985 
    chicken
    (Gallus gallus)
    Aves --
    Uncharacterized protein
    43(a)
    1 → many
    4(51120507-51159534)
    lizard
    (Anolis carolinensis)
    Reptilia --
    Uncharacterized protein
    47(a)
    1 → many
    6(58396729-58445129)


    ENSEMBL Gene Tree for TMPRSS11F (if available)
    TreeFam Gene Tree for TMPRSS11F (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for TMPRSS11F gene
    TMPRSS11D2  TMPRSS32  TMPRSS11B2  TMPRSS62  TMPRSS11A2  TMPRSS72  TMPRSS52  TMPRSS42  
    ST142  TMPRSS132  TMPRSS11E2  TMPRSS22  KLKB12  F112  HPN2  TMPRSS152  
    Selected SIMAP similar genes for TMPRSS11F using alignment to 1 protein entry:     TM11F_HUMAN(see all similar genes):
    HP    TMPRSS11B    TMPRSS11D    TMPRSS11A    DESC1    TMPRSS3
    F11    HAT    MGC52282    PROC1    PRSS22    TMPRSS11E
    TMPRSS15    DKFZp586F0824    KLKB1    PROC    CELA2A    ELA2A

    Find genes that share paralogs with TMPRSS11F           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for TMPRSS11F (see all 1227)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 4 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs746151351,2
    C,F--68939491(+) CACCTT/CACGAC 1 -- int11Minor allele frequency- C:0.05EA 120
    rs1809379031,2
    --68939605(+) GTTCAA/TCAAAT 1 -- int10--------
    rs1432739181,2
    F--68939686(+) TTGATA/GAATCG 2 F syn11Minor allele frequency- G:0.00NA 3786
    rs2003594891,2
    --68939690(+) TAAATC/TGACCG 2 Q R mis10--------
    rs1995597431,2
    C--68939693(+) ATCGAA/CCGCCT 2 G V mis10--------
    rs1998435971,2
    --68939786(+) AATAA-/TTTTTT 1 -- int10--------
    rs755519931,2
    C,F--68940033(+) TTGATT/GTGAGA 1 -- int11Minor allele frequency- G:0.13WA 118
    rs13708291,2
    C,F--68940060(+) TCACAC/TATTTT 1 -- int116Minor allele frequency- T:0.04NA EA WA CSA 632
    rs800893301,2
    F--68940198(+) CATCCC/AAAATA 1 -- int11Minor allele frequency- A:0.04WA 118
    rs13708301,2
    C,F,A,H--68940208(+) ATGGCG/ATCTCA 1 -- int126Minor allele frequency- A:0.37NS EA NA WA 2448

    HapMap Linkage Disequilibrium report for TMPRSS11F (68918916 - 68995598 bp)

    Structural Variations
         Database of Genomic Variants (DGV) Selected variations for TMPRSS11F (see all 14):    About this table    
    Variant IDTypeSubtypePubMed ID
    esv273792CNV Insertion20981092
    esv268503CNV Insertion20981092
    nsv879219CNV Loss21882294
    nsv879222CNV Loss21882294
    nsv879221CNV Loss21882294
    nsv879220CNV Loss21882294
    esv35010CNV Gain17911159
    nsv10514CNV Gain18304495
    nsv469718CNV Gain16826518
    nsv818242CNV Gain17921354

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for TMPRSS11F gene integrated from 10 sources:
    (articles sorted by number of sources associating them with TMPRSS11F)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)
    2. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)2 Hillier L.W.... Wilson R.K. (Nature 2005)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (Nat. Genet. 2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 389208 HGNC: 29994 AceView: FLJ16046 Ensembl:ENSG00000198092 euGenes: HUgn389208
    ECgene: TMPRSS11F H-InvDB: TMPRSS11F

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for TMPRSS11F Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for TMPRSS11F gene:
    Search GeneIP for patents involving TMPRSS11F

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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