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Aliases for TMPRSS11BNL Gene

Aliases for TMPRSS11BNL Gene

  • TMPRSS11B N-Terminal Like, Pseudogene 2 3
  • TMPRSS11B N Terminal-Like 2
  • TMPRSS11B N-Terminal Like 2

External Ids for TMPRSS11BNL Gene

Summaries for TMPRSS11BNL Gene

GeneCards Summary for TMPRSS11BNL Gene

TMPRSS11BNL is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMPRSS11BNL Gene

Genomics for TMPRSS11BNL Gene

Genomic Location for TMPRSS11BNL Gene

Start:
68,184,081 bp from pter
End:
68,218,080 bp from pter
Size:
34,000 bases
Orientation:
Minus strand

Genomic View for TMPRSS11BNL Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TMPRSS11BNL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMPRSS11BNL Gene

No data available for Regulatory Elements for TMPRSS11BNL Gene

Proteins for TMPRSS11BNL Gene

Post-translational modifications for TMPRSS11BNL Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMPRSS11BNL Gene

Domains for TMPRSS11BNL Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for TMPRSS11BNL Gene

Function for TMPRSS11BNL Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TMPRSS11BNL Gene

Localization for TMPRSS11BNL Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TMPRSS11BNL Gene COMPARTMENTS Subcellular localization image for TMPRSS11BNL gene
Compartment Confidence
extracellular 3

No data available for Gene Ontology (GO) - Cellular Components for TMPRSS11BNL Gene

Pathways for TMPRSS11BNL Gene

SuperPathways for TMPRSS11BNL Gene

No Data Available

Interacting Proteins for TMPRSS11BNL Gene

Gene Ontology (GO) - Biological Process for TMPRSS11BNL Gene

None

No data available for Pathways by source for TMPRSS11BNL Gene

Transcripts for TMPRSS11BNL Gene

mRNA/cDNA for TMPRSS11BNL Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMPRSS11BNL Gene

TMPRSS11B N terminal-like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMPRSS11BNL Gene

No ASD Table

Relevant External Links for TMPRSS11BNL Gene

GeneLoc Exon Structure for
TMPRSS11BNL
ECgene alternative splicing isoforms for
TMPRSS11BNL

Expression for TMPRSS11BNL Gene

mRNA expression in normal human tissues for TMPRSS11BNL Gene

mRNA differential expression in normal tissues according to GTEx for TMPRSS11BNL Gene

This gene is overexpressed in Esophagus - Mucosa (28.0), Minor Salivary Gland (11.9), and Vagina (9.1).

SOURCE GeneReport for Unigene cluster for TMPRSS11BNL Gene Hs.652046

genes like me logo Genes that share expressions with TMPRSS11BNL: view

Orthologs for TMPRSS11BNL Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for TMPRSS11BNL Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Tmprss11bnl 16
Species with no ortholog for TMPRSS11BNL:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TMPRSS11BNL Gene

ENSEMBL:
Gene Tree for TMPRSS11BNL (if available)
TreeFam:
Gene Tree for TMPRSS11BNL (if available)

Paralogs for TMPRSS11BNL Gene

No data available for Paralogs for TMPRSS11BNL Gene

Variants for TMPRSS11BNL Gene

Sequence variations from dbSNP and Humsavar for TMPRSS11BNL Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs4058263 -- 68,219,476(-) TCCCC(A/G)GGATG upstream-variant-2KB
rs4267805 -- 68,213,161(+) AGGAT(C/T)TGTGG intron-variant
rs4267806 -- 68,213,265(+) GCAAA(C/T)TGAGT intron-variant
rs4267807 -- 68,213,309(+) GATGG(C/T)TAATT intron-variant
rs4463136 -- 68,212,395(+) AATAG(C/T)TATTC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for TMPRSS11BNL Gene

Variant ID Type Subtype PubMed ID
nsv4371 CNV Loss 18451855
nsv508285 CNV Loss 20534489
esv996547 CNV Deletion 20482838
nsv499044 CNV Loss 21111241

Relevant External Links for TMPRSS11BNL Gene

HapMap Linkage Disequilibrium report
TMPRSS11BNL

Disorders for TMPRSS11BNL Gene

No disorders were found for TMPRSS11BNL Gene.

No data available for UniProtKB/Swiss-Prot for TMPRSS11BNL Gene

Publications for TMPRSS11BNL Gene

No publications were found for TMPRSS11BNL Gene.

Products for TMPRSS11BNL Gene

Sources for TMPRSS11BNL Gene

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