Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TMPRSS11BNL Gene

Aliases for TMPRSS11BNL Gene

  • TMPRSS11B N-Terminal Like, Pseudogene 2 3 5
  • TMPRSS11B N Terminal-Like 2
  • TMPRSS11B N-Terminal Like 2

External Ids for TMPRSS11BNL Gene

Previous GeneCards Identifiers for TMPRSS11BNL Gene

  • GC04M069055
  • GC04M064969

Summaries for TMPRSS11BNL Gene

GeneCards Summary for TMPRSS11BNL Gene

TMPRSS11BNL (TMPRSS11B N-Terminal Like, Pseudogene) is a Pseudogene.

Additional gene information for TMPRSS11BNL Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMPRSS11BNL Gene

Genomics for TMPRSS11BNL Gene

GeneHancer (GH) Regulatory Elements for TMPRSS11BNL Gene

Promoters and enhancers for TMPRSS11BNL Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I068346 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 4.4 -130.7 -130708 5.2 HDGF PKNOX1 CLOCK FOXA2 SMAD1 ARID4B SIN3A DMAP1 ZNF2 IRF4 YTHDC1 CENPC UBA6 ENSG00000270257 UGT2B29P TMPRSS11BNL APOOP4
GH04I068148 Enhancer 0.6 ENCODE 11 +69.1 69057 1.6 SOX6 TAL1 CBFA2T3 ATF2 TCF12 ATF4 NCOR1 SMARCA4 ZNF512 ID3 TMPRSS11BNL TMPRSS11F FTLP10
GH04I068256 Enhancer 0.6 ENCODE 10.5 -38.4 -38428 0.1 GATAD2A SOX6 TEAD4 TAL1 CBFA2T3 ZEB2 CHAMP1 TCF12 NCOR1 ADNP TMPRSS11BNL TMPRSS11B ENSG00000250642
GH04I068151 Enhancer 0.6 ENCODE 10.5 +65.6 65576 1.3 SOX6 MAFG ZMYM3 ZEB2 FOSL1 JUND SMARCA4 NFE2 FOS GCOM2 TMPRSS11GP TMPRSS11F TMPRSS11BNL TMPRSS11D FTLP10
GH04I068360 Enhancer 1.3 Ensembl ENCODE dbSUPER 4.8 -143.1 -143147 2 PKNOX1 ATF1 FOXA2 ARNT SIN3A ZNF766 ATF7 ATF4 SMARCA4 ZNF184 TMPRSS11BNL UGT2B29P YTHDC1 MT2P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TMPRSS11BNL on UCSC Golden Path with GeneCards custom track

Genomic Locations for TMPRSS11BNL Gene

Genomic Locations for TMPRSS11BNL Gene
chr4:68,184,081-68,218,080
(GRCh38/hg38)
Size:
34,000 bases
Orientation:
Minus strand
chr4:69,054,242-69,083,798
(GRCh37/hg19)

Genomic View for TMPRSS11BNL Gene

Genes around TMPRSS11BNL on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMPRSS11BNL Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMPRSS11BNL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMPRSS11BNL Gene

Proteins for TMPRSS11BNL Gene

Post-translational modifications for TMPRSS11BNL Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMPRSS11BNL Gene

Domains & Families for TMPRSS11BNL Gene

Suggested Antigen Peptide Sequences for TMPRSS11BNL Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for TMPRSS11BNL Gene

Function for TMPRSS11BNL Gene

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TMPRSS11BNL Gene

Localization for TMPRSS11BNL Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TMPRSS11BNL gene
Compartment Confidence
extracellular 3

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMPRSS11BNL Gene

Pathways & Interactions for TMPRSS11BNL Gene

SuperPathways for TMPRSS11BNL Gene

No Data Available

Interacting Proteins for TMPRSS11BNL Gene

Gene Ontology (GO) - Biological Process for TMPRSS11BNL Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMPRSS11BNL Gene

Drugs & Compounds for TMPRSS11BNL Gene

No Compound Related Data Available

Transcripts for TMPRSS11BNL Gene

mRNA/cDNA for TMPRSS11BNL Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMPRSS11BNL Gene

TMPRSS11B N terminal-like:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMPRSS11BNL Gene

No ASD Table

Relevant External Links for TMPRSS11BNL Gene

GeneLoc Exon Structure for
TMPRSS11BNL
ECgene alternative splicing isoforms for
TMPRSS11BNL

Expression for TMPRSS11BNL Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMPRSS11BNL Gene

mRNA differential expression in normal tissues according to GTEx for TMPRSS11BNL Gene

This gene is overexpressed in Esophagus - Mucosa (x28.0), Minor Salivary Gland (x11.9), and Vagina (x9.1).

NURSA nuclear receptor signaling pathways regulating expression of TMPRSS11BNL Gene:

TMPRSS11BNL

SOURCE GeneReport for Unigene cluster for TMPRSS11BNL Gene:

Hs.652046
genes like me logo Genes that share expression patterns with TMPRSS11BNL: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMPRSS11BNL Gene

Orthologs for TMPRSS11BNL Gene

Evolution for TMPRSS11BNL Gene

ENSEMBL:
Gene Tree for TMPRSS11BNL (if available)
TreeFam:
Gene Tree for TMPRSS11BNL (if available)

No data available for Orthologs for TMPRSS11BNL Gene

Paralogs for TMPRSS11BNL Gene

No data available for Paralogs for TMPRSS11BNL Gene

Variants for TMPRSS11BNL Gene

Sequence variations from dbSNP and Humsavar for TMPRSS11BNL Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000087267 -- 68,207,600(-) C/A intron_variant
rs1000123478 -- 68,194,143(-) C/G intron_variant
rs1000168096 -- 68,184,989(-) G/A intron_variant
rs1000178096 -- 68,194,418(-) G/A/T intron_variant
rs1000221000 -- 68,189,622(-) T/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TMPRSS11BNL Gene

Variant ID Type Subtype PubMed ID
esv3323904 CNV duplication 20981092
esv996547 CNV deletion 20482838
nsv1073768 CNV deletion 25765185
nsv1126690 CNV deletion 24896259
nsv4371 CNV deletion 18451855
nsv499044 CNV loss 21111241
nsv508285 CNV deletion 20534489
nsv594506 CNV loss 21841781
nsv950047 CNV deletion 24416366

Variation tolerance for TMPRSS11BNL Gene

Gene Damage Index Score: 0.57; 12.37% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for TMPRSS11BNL Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMPRSS11BNL

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TMPRSS11BNL Gene

Disorders for TMPRSS11BNL Gene

Additional Disease Information for TMPRSS11BNL

No disorders were found for TMPRSS11BNL Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMPRSS11BNL Gene

Publications for TMPRSS11BNL Gene

No publications were found for TMPRSS11BNL Gene.

Products for TMPRSS11BNL Gene

Sources for TMPRSS11BNL Gene

Content
Loading form....