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Aliases for TMPRSS11BNL Gene

Aliases for TMPRSS11BNL Gene

  • TMPRSS11B N-Terminal Like, Pseudogene 2 3 5
  • TMPRSS11B N Terminal-Like 2
  • TMPRSS11B N-Terminal Like 2

External Ids for TMPRSS11BNL Gene

Previous GeneCards Identifiers for TMPRSS11BNL Gene

  • GC04M069055
  • GC04M064969

Summaries for TMPRSS11BNL Gene

GeneCards Summary for TMPRSS11BNL Gene

TMPRSS11BNL (TMPRSS11B N-Terminal Like, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMPRSS11BNL Gene

Genomics for TMPRSS11BNL Gene

Genomic Location for TMPRSS11BNL Gene

Chromosome:
4
Start:
68,184,081 bp from pter
End:
68,218,080 bp from pter
Size:
34,000 bases
Orientation:
Minus strand

Genomic View for TMPRSS11BNL Gene

Genes around TMPRSS11BNL on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMPRSS11BNL Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMPRSS11BNL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMPRSS11BNL Gene

No data available for Regulatory Elements for TMPRSS11BNL Gene

Proteins for TMPRSS11BNL Gene

Post-translational modifications for TMPRSS11BNL Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMPRSS11BNL Gene

Domains & Families for TMPRSS11BNL Gene

Suggested Antigen Peptide Sequences for TMPRSS11BNL Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for TMPRSS11BNL Gene

Function for TMPRSS11BNL Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TMPRSS11BNL Gene

Localization for TMPRSS11BNL Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TMPRSS11BNL Gene COMPARTMENTS Subcellular localization image for TMPRSS11BNL gene
Compartment Confidence
extracellular 3

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for TMPRSS11BNL Gene

Pathways & Interactions for TMPRSS11BNL Gene

SuperPathways for TMPRSS11BNL Gene

No Data Available

Interacting Proteins for TMPRSS11BNL Gene

Gene Ontology (GO) - Biological Process for TMPRSS11BNL Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMPRSS11BNL Gene

Drugs & Compounds for TMPRSS11BNL Gene

No Compound Related Data Available

Transcripts for TMPRSS11BNL Gene

mRNA/cDNA for TMPRSS11BNL Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMPRSS11BNL Gene

TMPRSS11B N terminal-like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMPRSS11BNL Gene

No ASD Table

Relevant External Links for TMPRSS11BNL Gene

GeneLoc Exon Structure for
TMPRSS11BNL
ECgene alternative splicing isoforms for
TMPRSS11BNL

Expression for TMPRSS11BNL Gene

mRNA expression in normal human tissues for TMPRSS11BNL Gene

mRNA differential expression in normal tissues according to GTEx for TMPRSS11BNL Gene

This gene is overexpressed in Esophagus - Mucosa (x28.0), Minor Salivary Gland (x11.9), and Vagina (x9.1).

SOURCE GeneReport for Unigene cluster for TMPRSS11BNL Gene Hs.652046

genes like me logo Genes that share expression patterns with TMPRSS11BNL: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for TMPRSS11BNL Gene

Orthologs for TMPRSS11BNL Gene

Evolution for TMPRSS11BNL Gene

ENSEMBL:
Gene Tree for TMPRSS11BNL (if available)
TreeFam:
Gene Tree for TMPRSS11BNL (if available)

No data available for Orthologs for TMPRSS11BNL Gene

Paralogs for TMPRSS11BNL Gene

No data available for Paralogs for TMPRSS11BNL Gene

Variants for TMPRSS11BNL Gene

Sequence variations from dbSNP and Humsavar for TMPRSS11BNL Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs4058263 -- 68,219,476(-) TCCCC(A/G)GGATG upstream-variant-2KB
rs4860917 -- 68,216,985(+) TCACA(C/T)AACAA intron-variant
rs6552169 -- 68,218,658(+) ACATG(A/T)TTATA upstream-variant-2KB
rs6552170 -- 68,218,760(+) ATTGG(A/G)AAAAA upstream-variant-2KB
rs7440016 -- 68,213,764(+) ATACC(A/C)CACAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMPRSS11BNL Gene

Variant ID Type Subtype PubMed ID
nsv4371 CNV Loss 18451855
nsv508285 CNV Loss 20534489
esv996547 CNV Deletion 20482838
nsv499044 CNV Loss 21111241

Variation tolerance for TMPRSS11BNL Gene

Gene Damage Index Score: 0.57; 12.37% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TMPRSS11BNL Gene

HapMap Linkage Disequilibrium report
TMPRSS11BNL

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TMPRSS11BNL Gene

Disorders for TMPRSS11BNL Gene

Relevant External Links for TMPRSS11BNL

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMPRSS11BNL

No disorders were found for TMPRSS11BNL Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMPRSS11BNL Gene

Publications for TMPRSS11BNL Gene

No publications were found for TMPRSS11BNL Gene.

Products for TMPRSS11BNL Gene

Sources for TMPRSS11BNL Gene

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