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Aliases for TMPO-AS1 Gene

Subcategory (RNA class) for TMPO-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for TMPO-AS1 Gene

  • TMPO Antisense RNA 1 2 3 5
  • TMPO Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TMPO-AS1 Gene

ORGUL Members for TMPO-AS1 Gene

Previous GeneCards Identifiers for TMPO-AS1 Gene

  • GC12M098909

Summaries for TMPO-AS1 Gene

GeneCards Summary for TMPO-AS1 Gene

TMPO-AS1 (TMPO Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMPO-AS1 Gene

Genomics for TMPO-AS1 Gene

Regulatory Elements for TMPO-AS1 Gene

Enhancers for TMPO-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G098512 1.7 Ensembl ENCODE dbSUPER 6 +0.3 303 7.0 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 ZNF610 GLIS1 TMPO RNU4-41P SLC9A7P1 TMPO-AS1 LINC02453 GC12M098515
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TMPO-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TMPO-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000056128 122 4201 FEZF1 DMAP1 YY1 ZNF143 SP3 NFYC TBX21 ZNF610 GLIS1 NBN

Genomic Location for TMPO-AS1 Gene

Chromosome:
12
Start:
98,512,973 bp from pter
End:
98,516,422 bp from pter
Size:
3,450 bases
Orientation:
Minus strand

Genomic View for TMPO-AS1 Gene

Genes around TMPO-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMPO-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMPO-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMPO-AS1 Gene

Proteins for TMPO-AS1 Gene

Post-translational modifications for TMPO-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMPO-AS1 Gene

Domains & Families for TMPO-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMPO-AS1 Gene

Function for TMPO-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMPO-AS1 Gene

Localization for TMPO-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TMPO-AS1 Gene

Pathways & Interactions for TMPO-AS1 Gene

SuperPathways for TMPO-AS1 Gene

No Data Available

Interacting Proteins for TMPO-AS1 Gene

Gene Ontology (GO) - Biological Process for TMPO-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMPO-AS1 Gene

Drugs & Compounds for TMPO-AS1 Gene

No Compound Related Data Available

Transcripts for TMPO-AS1 Gene

mRNA/cDNA for TMPO-AS1 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMPO-AS1 Gene

TMPO antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMPO-AS1 Gene

No ASD Table

Relevant External Links for TMPO-AS1 Gene

GeneLoc Exon Structure for
TMPO-AS1
ECgene alternative splicing isoforms for
TMPO-AS1

Expression for TMPO-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMPO-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TMPO-AS1 Gene

This gene is overexpressed in Testis (x9.3).

SOURCE GeneReport for Unigene cluster for TMPO-AS1 Gene:

Hs.594042
genes like me logo Genes that share expression patterns with TMPO-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMPO-AS1 Gene

Orthologs for TMPO-AS1 Gene

Evolution for TMPO-AS1 Gene

ENSEMBL:
Gene Tree for TMPO-AS1 (if available)
TreeFam:
Gene Tree for TMPO-AS1 (if available)

No data available for Orthologs for TMPO-AS1 Gene

Paralogs for TMPO-AS1 Gene

No data available for Paralogs for TMPO-AS1 Gene

Variants for TMPO-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMPO-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs886038776 Likely benign 98,516,131(+) AGCCG(A/C)GCAGC nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon
rs886038806 Likely benign 98,515,891(+) GACCC(C/T)TCGGT nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon
rs370309699 Uncertain significance 98,515,816(+) GCCGG(C/T)GTGAG nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs397516494 Uncertain significance 98,515,944(+) TGTGA(C/T)GCTGC intron-variant, upstream-variant-2KB, reference, missense
rs549257131 Uncertain significance 98,515,948(+) ACGCT(A/G/T)CCGGC intron-variant, upstream-variant-2KB, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for TMPO-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv7234 OTHER inversion 18451855

Relevant External Links for TMPO-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMPO-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMPO-AS1 Gene

Disorders for TMPO-AS1 Gene

Relevant External Links for TMPO-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMPO-AS1

No disorders were found for TMPO-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMPO-AS1 Gene

Publications for TMPO-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TMPO-AS1 Gene

Sources for TMPO-AS1 Gene

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