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Aliases for TMPO-AS1 Gene

Subcategory (RNA class) for TMPO-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for TMPO-AS1 Gene

  • TMPO Antisense RNA 1 2 3 5
  • TMPO Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TMPO-AS1 Gene

ORGUL Members for TMPO-AS1 Gene

Previous GeneCards Identifiers for TMPO-AS1 Gene

  • GC12M098909

Summaries for TMPO-AS1 Gene

GeneCards Summary for TMPO-AS1 Gene

TMPO-AS1 (TMPO Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

Additional gene information for TMPO-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMPO-AS1 Gene

Genomics for TMPO-AS1 Gene

GeneHancer (GH) Regulatory Elements for TMPO-AS1 Gene

Promoters and enhancers for TMPO-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I098512 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 556 +0.3 303 7 FEZF1 DMAP1 YY1 E2F8 ZNF143 SP3 NFYC ZNF610 GLIS1 NBN TMPO TMPO-AS1 GC12M098515 GC12P098518 RNU4-41P SLC9A7P1 LINC02453
GH12I098592 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10 -78.1 -78094 4.3 PKNOX1 SMAD1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC25A3 GC12M098595 TMPO APAF1 IKBIP TMPO-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TMPO-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TMPO-AS1 Gene

Genomic Locations for TMPO-AS1 Gene
chr12:98,512,973-98,516,422
(GRCh38/hg38)
Size:
3,450 bases
Orientation:
Minus strand
chr12:98,906,751-98,910,200
(GRCh37/hg19)

Genomic View for TMPO-AS1 Gene

Genes around TMPO-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMPO-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMPO-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMPO-AS1 Gene

Proteins for TMPO-AS1 Gene

Post-translational modifications for TMPO-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMPO-AS1 Gene

Domains & Families for TMPO-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMPO-AS1 Gene

Function for TMPO-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMPO-AS1 Gene

Localization for TMPO-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMPO-AS1 Gene

Pathways & Interactions for TMPO-AS1 Gene

SuperPathways for TMPO-AS1 Gene

No Data Available

Interacting Proteins for TMPO-AS1 Gene

Gene Ontology (GO) - Biological Process for TMPO-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMPO-AS1 Gene

Drugs & Compounds for TMPO-AS1 Gene

No Compound Related Data Available

Transcripts for TMPO-AS1 Gene

mRNA/cDNA for TMPO-AS1 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMPO-AS1 Gene

TMPO antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMPO-AS1 Gene

No ASD Table

Relevant External Links for TMPO-AS1 Gene

GeneLoc Exon Structure for
TMPO-AS1
ECgene alternative splicing isoforms for
TMPO-AS1

Expression for TMPO-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMPO-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TMPO-AS1 Gene

This gene is overexpressed in Testis (x9.3).

SOURCE GeneReport for Unigene cluster for TMPO-AS1 Gene:

Hs.594042
genes like me logo Genes that share expression patterns with TMPO-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMPO-AS1 Gene

Orthologs for TMPO-AS1 Gene

Evolution for TMPO-AS1 Gene

ENSEMBL:
Gene Tree for TMPO-AS1 (if available)
TreeFam:
Gene Tree for TMPO-AS1 (if available)

No data available for Orthologs for TMPO-AS1 Gene

Paralogs for TMPO-AS1 Gene

No data available for Paralogs for TMPO-AS1 Gene

Variants for TMPO-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMPO-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs114074541 benign, not specified, Loeys-Dietz syndrome 2 98,515,954(-) C/T intron_variant
rs370309699 uncertain-significance, Dilated Cardiomyopathy, Dominant 98,515,816(-) C/T non_coding_transcript_variant
rs549257131 uncertain-significance, Dilated Cardiomyopathy, Dominant 98,515,948(-) G/A/T intron_variant
rs575336054 uncertain-significance, Dilated Cardiomyopathy, Dominant 98,515,613(-) C/A non_coding_transcript_variant
rs59027673 benign, not specified, Loeys-Dietz syndrome 2 98,516,092(-) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TMPO-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv7234 OTHER inversion 18451855

Additional Variant Information for TMPO-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMPO-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMPO-AS1 Gene

Disorders for TMPO-AS1 Gene

Additional Disease Information for TMPO-AS1

No disorders were found for TMPO-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMPO-AS1 Gene

Publications for TMPO-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for TMPO-AS1 Gene

Sources for TMPO-AS1 Gene

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