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Aliases for TMPO-AS1 Gene

Subcategory (RNA class) for TMPO-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for TMPO-AS1 Gene

  • TMPO Antisense RNA 1 2 3
  • TMPO Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TMPO-AS1 Gene

ORGUL Members for TMPO-AS1 Gene

Previous GeneCards Identifiers for TMPO-AS1 Gene

  • GC12M098909

Summaries for TMPO-AS1 Gene

GeneCards Summary for TMPO-AS1 Gene

TMPO-AS1 is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMPO-AS1 Gene

Genomics for TMPO-AS1 Gene

Genomic Location for TMPO-AS1 Gene

Start:
98,512,973 bp from pter
End:
98,516,422 bp from pter
Size:
3,450 bases
Orientation:
Minus strand

Genomic View for TMPO-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TMPO-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMPO-AS1 Gene

No data available for Regulatory Elements for TMPO-AS1 Gene

Proteins for TMPO-AS1 Gene

Post-translational modifications for TMPO-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMPO-AS1 Gene

Domains for TMPO-AS1 Gene

Gene Families for TMPO-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TMPO-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMPO-AS1 Gene

Function for TMPO-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TMPO-AS1 Gene

Localization for TMPO-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TMPO-AS1 Gene

Pathways for TMPO-AS1 Gene

SuperPathways for TMPO-AS1 Gene

No Data Available

Interacting Proteins for TMPO-AS1 Gene

Gene Ontology (GO) - Biological Process for TMPO-AS1 Gene

None

No data available for Pathways by source for TMPO-AS1 Gene

Transcripts for TMPO-AS1 Gene

mRNA/cDNA for TMPO-AS1 Gene

(4) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMPO-AS1 Gene

TMPO antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMPO-AS1 Gene

No ASD Table

Relevant External Links for TMPO-AS1 Gene

GeneLoc Exon Structure for
TMPO-AS1
ECgene alternative splicing isoforms for
TMPO-AS1

Expression for TMPO-AS1 Gene

mRNA expression in normal human tissues for TMPO-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TMPO-AS1 Gene

This gene is overexpressed in Testis (9.3).

SOURCE GeneReport for Unigene cluster for TMPO-AS1 Gene Hs.594042

genes like me logo Genes that share expressions with TMPO-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for TMPO-AS1 Gene

Orthologs for TMPO-AS1 Gene

Evolution for TMPO-AS1 Gene

ENSEMBL:
Gene Tree for TMPO-AS1 (if available)
TreeFam:
Gene Tree for TMPO-AS1 (if available)

No data available for Orthologs for TMPO-AS1 Gene

Paralogs for TMPO-AS1 Gene

No data available for Paralogs for TMPO-AS1 Gene

Variants for TMPO-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMPO-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs61934001 -- 98,512,476(+) TCTTA(C/T)ACATA downstream-variant-500B
rs74407403 -- 98,513,057(+) AGGAT(C/G)TGAAA nc-transcript-variant
rs79405238 -- 98,513,080(+) TGAAC(A/G)TATGA nc-transcript-variant
rs115991697 -- 98,512,555(+) GCAGC(A/C)TCAAC downstream-variant-500B
rs138419438 -- 98,512,939(+) AATGC(A/C)AGAGA downstream-variant-500B

Relevant External Links for TMPO-AS1 Gene

HapMap Linkage Disequilibrium report
TMPO-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for TMPO-AS1 Gene

Disorders for TMPO-AS1 Gene

No disorders were found for TMPO-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for TMPO-AS1 Gene

Publications for TMPO-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for TMPO-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TMPO-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TMPO-AS1
    • Block miRNA regulation of TMPO-AS1 using miScript Target Protectors

    Sources for TMPO-AS1 Gene

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