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Aliases for TMPO-AS1 Gene

Subcategory (RNA class) for TMPO-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for TMPO-AS1 Gene

  • TMPO Antisense RNA 1 2 3 5
  • TMPO Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TMPO-AS1 Gene

ORGUL Members for TMPO-AS1 Gene

Previous GeneCards Identifiers for TMPO-AS1 Gene

  • GC12M098909

Summaries for TMPO-AS1 Gene

GeneCards Summary for TMPO-AS1 Gene

TMPO-AS1 (TMPO Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMPO-AS1 Gene

Genomics for TMPO-AS1 Gene

Regulatory Elements for TMPO-AS1 Gene

Enhancers for TMPO-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F098512 1.2 ENCODE 6 +0.3 303 7.0 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 CBX5 TMPO LOC101928937 PPIAP8 RNU6-36P RNU4-41P SLC9A7P1 TMPO-AS1 LOC643770 GC12M098515
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TMPO-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TMPO-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001404791 -78 5001 HDGF ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 CBX5 ZNF143

Genomic Location for TMPO-AS1 Gene

Chromosome:
12
Start:
98,512,973 bp from pter
End:
98,516,422 bp from pter
Size:
3,450 bases
Orientation:
Minus strand

Genomic View for TMPO-AS1 Gene

Genes around TMPO-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMPO-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMPO-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMPO-AS1 Gene

Proteins for TMPO-AS1 Gene

Post-translational modifications for TMPO-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMPO-AS1 Gene

Domains & Families for TMPO-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMPO-AS1 Gene

Function for TMPO-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMPO-AS1 Gene

Localization for TMPO-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TMPO-AS1 Gene

Pathways & Interactions for TMPO-AS1 Gene

SuperPathways for TMPO-AS1 Gene

No Data Available

Interacting Proteins for TMPO-AS1 Gene

Gene Ontology (GO) - Biological Process for TMPO-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMPO-AS1 Gene

Transcripts for TMPO-AS1 Gene

mRNA/cDNA for TMPO-AS1 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMPO-AS1 Gene

TMPO antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMPO-AS1 Gene

No ASD Table

Relevant External Links for TMPO-AS1 Gene

GeneLoc Exon Structure for
TMPO-AS1
ECgene alternative splicing isoforms for
TMPO-AS1

Expression for TMPO-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TMPO-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TMPO-AS1 Gene

This gene is overexpressed in Testis (x9.3).

SOURCE GeneReport for Unigene cluster for TMPO-AS1 Gene:

Hs.594042
genes like me logo Genes that share expression patterns with TMPO-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TMPO-AS1 Gene

Orthologs for TMPO-AS1 Gene

Evolution for TMPO-AS1 Gene

ENSEMBL:
Gene Tree for TMPO-AS1 (if available)
TreeFam:
Gene Tree for TMPO-AS1 (if available)

No data available for Orthologs for TMPO-AS1 Gene

Paralogs for TMPO-AS1 Gene

No data available for Paralogs for TMPO-AS1 Gene

Variants for TMPO-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMPO-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs727504659 Likely benign 98,516,119(+) GCCGC(A/G/T)GGCCG nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon
rs397516494 Uncertain significance 98,515,944(+) TGTGA(C/T)GCTGC intron-variant, upstream-variant-2KB, reference, missense
rs727505279 Uncertain significance 98,515,937(+) CCAAC(A/C)ATGTG intron-variant, upstream-variant-2KB, reference, missense
rs730880228 Uncertain significance 98,516,115(+) CGCCG(C/T)CGCGG nc-transcript-variant, upstream-variant-2KB, reference, missense
rs794729184 Uncertain significance 98,516,099(+) TCCTC(C/G)GCTCT nc-transcript-variant, upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for TMPO-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv7234 OTHER inversion 18451855

Relevant External Links for TMPO-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMPO-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMPO-AS1 Gene

Disorders for TMPO-AS1 Gene

Relevant External Links for TMPO-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMPO-AS1

No disorders were found for TMPO-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMPO-AS1 Gene

Publications for TMPO-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TMPO-AS1 Gene

Sources for TMPO-AS1 Gene

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