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Aliases for TMOD1 Gene

Aliases for TMOD1 Gene

  • Tropomodulin 1 2 3 5
  • Erythrocyte Tropomodulin 3 4
  • D9S57E 3 4
  • E-Tmod 3 4
  • TMOD 3 4
  • E-Tropomodulin 3
  • Tropomodulin-1 3
  • ETMOD 3

External Ids for TMOD1 Gene

Previous HGNC Symbols for TMOD1 Gene

  • D9S57E
  • TMOD

Previous GeneCards Identifiers for TMOD1 Gene

  • GC09P092029
  • GC09P093743
  • GC09P095643
  • GC09P095666
  • GC09P097343
  • GC09P099303
  • GC09P100263
  • GC09P069864

Summaries for TMOD1 Gene

Entrez Gene Summary for TMOD1 Gene

  • This gene encodes a member of the tropomodulin family. The encoded protein is an actin-capping protein that regulates tropomyosin by binding to its N-terminus, inhibiting depolymerization and elongation of the pointed end of actin filaments and thereby influencing the structure of the erythrocyte membrane skeleton. Multiple transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Oct 2009]

GeneCards Summary for TMOD1 Gene

TMOD1 (Tropomodulin 1) is a Protein Coding gene. Diseases associated with TMOD1 include Cardiomyopathy, Hypertrophic 6 and Corneal Dystrophy, Posterior Polymorphous, 1. Among its related pathways are Striated Muscle Contraction and MAPK-Erk Pathway. GO annotations related to this gene include actin binding and tropomyosin binding. An important paralog of this gene is TMOD3.

UniProtKB/Swiss-Prot for TMOD1 Gene

  • Blocks the elongation and depolymerization of the actin filaments at the pointed end. The Tmod/TM complex contributes to the formation of the short actin protofilament, which in turn defines the geometry of the membrane skeleton. May play an important role in regulating the organization of actin filaments by preferentially binding to a specific tropomyosin isoform at its N-terminus.

Gene Wiki entry for TMOD1 Gene

Additional gene information for TMOD1 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMOD1 Gene

Genomics for TMOD1 Gene

Regulatory Elements for TMOD1 Gene

Enhancers for TMOD1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H097524 1.4 Ensembl ENCODE dbSUPER 11.7 +26.3 26325 5 BATF BRCA1 RFX5 ZNF143 RCOR1 FOS ATF7 ETV6 RUNX3 IKZF2 TMOD1 LOC105376168 TDRD7 ANKRD18CP ENSG00000203279 AAED1 CCDC180 PIR34153
GH09H097570 0.8 ENCODE dbSUPER 19.3 +70.1 70113 1 NFIC NFIB POLR2A RCOR1 TMOD1 LOC105376168 TDRD7 PIR34153
GH09H097631 1.4 ENCODE dbSUPER 9.2 +132.2 132234 3 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 YY1 ZNF766 NCBP1 MFSD14C LOC441454 ZNF782 NUTM2G TSTD2 ZNF322P1 ENSG00000224848 ZNF510 ENSG00000254633
GH09H097703 1.2 Ensembl ENCODE 10.7 +202.9 202905 1 TBP PKNOX1 FOXA2 BMI1 FEZF1 BATF THRB RARA ZNF366 SCRT2 TMOD1 FOXE1 KRT18P13 TRMO TSTD2 ENSG00000260677
GH09H097554 1.7 FANTOM5 Ensembl ENCODE dbSUPER 6.7 +56.0 56017 5 PKNOX1 FOXA2 RAD21 YY1 SCRT2 RCOR1 ATF7 RUNX3 CREM IKZF2 TMOD1 TRMO PIR34153 LOC105376168
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TMOD1 on UCSC Golden Path with GeneCards custom track

Promoters for TMOD1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000238518 520 1001 HDAC1 PKNOX1 BMI1 RAD21 EGR1 ATF7 RUNX3 IKZF2 EGR2 SMARCA5

Genomic Location for TMOD1 Gene

Chromosome:
9
Start:
97,501,180 bp from pter
End:
97,601,748 bp from pter
Size:
100,569 bases
Orientation:
Plus strand

Genomic View for TMOD1 Gene

Genes around TMOD1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMOD1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMOD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMOD1 Gene

Proteins for TMOD1 Gene

  • Protein details for TMOD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P28289-TMOD1_HUMAN
    Recommended name:
    Tropomodulin-1
    Protein Accession:
    P28289
    Secondary Accessions:
    • B2RB77
    • Q5T7W3
    • Q9BUF1

    Protein attributes for TMOD1 Gene

    Size:
    359 amino acids
    Molecular mass:
    40569 Da
    Quaternary structure:
    • Binds to the N-terminus of isoforms 2/3 of TPM3 and to actin.

    Three dimensional structures from OCA and Proteopedia for TMOD1 Gene

    Alternative splice isoforms for TMOD1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TMOD1 Gene

Post-translational modifications for TMOD1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TMOD1 Gene

No data available for DME Specific Peptides for TMOD1 Gene

Domains & Families for TMOD1 Gene

Gene Families for TMOD1 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for TMOD1 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for TMOD1 Gene

Graphical View of Domain Structure for InterPro Entry

P28289

UniProtKB/Swiss-Prot:

TMOD1_HUMAN :
  • Belongs to the tropomodulin family.
Family:
  • Belongs to the tropomodulin family.
genes like me logo Genes that share domains with TMOD1: view

Function for TMOD1 Gene

Molecular function for TMOD1 Gene

UniProtKB/Swiss-Prot Function:
Blocks the elongation and depolymerization of the actin filaments at the pointed end. The Tmod/TM complex contributes to the formation of the short actin protofilament, which in turn defines the geometry of the membrane skeleton. May play an important role in regulating the organization of actin filaments by preferentially binding to a specific tropomyosin isoform at its N-terminus.

Phenotypes From GWAS Catalog for TMOD1 Gene

Gene Ontology (GO) - Molecular Function for TMOD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003779 actin binding IDA 26370058
GO:0005523 tropomyosin binding IBA --
GO:0051015 actin filament binding IEA --
genes like me logo Genes that share ontologies with TMOD1: view
genes like me logo Genes that share phenotypes with TMOD1: view

Animal Models for TMOD1 Gene

MGI Knock Outs for TMOD1:

Animal Model Products

CRISPR Products

miRNA for TMOD1 Gene

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for TMOD1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for TMOD1 Gene

Localization for TMOD1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TMOD1 Gene

Cytoplasm, cytoskeleton. Note=In myofibrils with sarcomeric structure, localizes to the pointed end of actin thin filaments (PubMed:25250574). {ECO:0000269 PubMed:25250574}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TMOD1 gene
Compartment Confidence
cytoskeleton 5
cytosol 5
nucleus 2

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for TMOD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005829 cytosol TAS --
GO:0005856 cytoskeleton IEA --
GO:0005865 striated muscle thin filament IDA 25250574
GO:0005884 actin filament IDA 26370058
genes like me logo Genes that share ontologies with TMOD1: view

Pathways & Interactions for TMOD1 Gene

genes like me logo Genes that share pathways with TMOD1: view

Pathways by source for TMOD1 Gene

1 Sino Biological pathway for TMOD1 Gene
1 BioSystems pathway for TMOD1 Gene
2 Reactome pathways for TMOD1 Gene

Gene Ontology (GO) - Biological Process for TMOD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006936 muscle contraction IBA --
GO:0007015 actin filament organization IBA --
GO:0008344 adult locomotory behavior IEA --
GO:0030049 muscle filament sliding TAS --
GO:0030239 myofibril assembly IBA --
genes like me logo Genes that share ontologies with TMOD1: view

No data available for SIGNOR curated interactions for TMOD1 Gene

Drugs & Compounds for TMOD1 Gene

No Compound Related Data Available

Transcripts for TMOD1 Gene

mRNA/cDNA for TMOD1 Gene

Unigene Clusters for TMOD1 Gene

Tropomodulin 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for TMOD1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TMOD1 Gene

No ASD Table

Relevant External Links for TMOD1 Gene

GeneLoc Exon Structure for
TMOD1
ECgene alternative splicing isoforms for
TMOD1

Expression for TMOD1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMOD1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TMOD1 Gene

This gene is overexpressed in Muscle - Skeletal (x6.9), Heart - Left Ventricle (x5.5), and Heart - Atrial Appendage (x4.4).

Protein differential expression in normal tissues from HIPED for TMOD1 Gene

This gene is overexpressed in Heart (21.4) and Fetal heart (11.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for TMOD1 Gene



Protein tissue co-expression partners for TMOD1 Gene

NURSA nuclear receptor signaling pathways regulating expression of TMOD1 Gene:

TMOD1

SOURCE GeneReport for Unigene cluster for TMOD1 Gene:

Hs.404289

mRNA Expression by UniProt/SwissProt for TMOD1 Gene:

P28289-TMOD1_HUMAN
Tissue specificity: Highly expressed in the erythrocyte, heart and skeletal muscle.

Evidence on tissue expression from TISSUES for TMOD1 Gene

  • Nervous system(4.7)
  • Muscle(3.4)
  • Heart(3)
  • Blood(2.2)
genes like me logo Genes that share expression patterns with TMOD1: view

Primer Products

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for TMOD1 Gene

Orthologs for TMOD1 Gene

This gene was present in the common ancestor of animals.

Orthologs for TMOD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TMOD1 34 33
  • 99.72 (n)
OneToOne
dog
(Canis familiaris)
Mammalia TMOD1 34 33
  • 92.11 (n)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TMOD1 34
  • 92 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TMOD1 33 34
  • 90.81 (n)
mouse
(Mus musculus)
Mammalia Tmod1 34 16 33
  • 89.6 (n)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tmod1 33
  • 89.51 (n)
oppossum
(Monodelphis domestica)
Mammalia TMOD1 34
  • 77 (a)
OneToOne
chicken
(Gallus gallus)
Aves TMOD1 33 34
  • 77.16 (n)
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 85 (a)
OneToMany
-- 34
  • 81 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia tmod1 33
  • 73.91 (n)
zebrafish
(Danio rerio)
Actinopterygii tmod1 34 33
  • 69.87 (n)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000969 33
  • 50.2 (n)
fruit fly
(Drosophila melanogaster)
Insecta tmod 33
  • 49.18 (n)
worm
(Caenorhabditis elegans)
Secernentea unc-94 33
  • 47.56 (n)
Species where no ortholog for TMOD1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TMOD1 Gene

ENSEMBL:
Gene Tree for TMOD1 (if available)
TreeFam:
Gene Tree for TMOD1 (if available)

Paralogs for TMOD1 Gene

Paralogs for TMOD1 Gene

(7) SIMAP similar genes for TMOD1 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with TMOD1: view

Variants for TMOD1 Gene

Sequence variations from dbSNP and Humsavar for TMOD1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000018993 -- 97,589,586(+) AACTC(A/C)CTAAT intron-variant
rs1000050005 -- 97,589,429(+) ACCAC(A/G)CCCAG intron-variant
rs1000097778 -- 97,499,904(+) ATAAG(A/G)TGAAA upstream-variant-2KB
rs1000106248 -- 97,518,866(+) ATCCC(A/T)TTGGC intron-variant
rs1000107243 -- 97,533,442(+) TAGTT(A/G)TGCAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMOD1 Gene

Variant ID Type Subtype PubMed ID
dgv1494e214 CNV gain 21293372
esv3621190 CNV gain 21293372
nsv1125063 CNV duplication 24896259
nsv1137485 CNV deletion 24896259
nsv1147546 CNV duplication 26484159

Variation tolerance for TMOD1 Gene

Residual Variation Intolerance Score: 18.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.33; 26.43% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TMOD1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMOD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TMOD1 Gene

Disorders for TMOD1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for TMOD1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
cardiomyopathy, hypertrophic 6
  • hypertrophic cardiomyopathy 6
corneal dystrophy, posterior polymorphous, 1
  • posterior polymorphous corneal dystrophy
- elite association - COSMIC cancer census association via MalaCards
Search TMOD1 in MalaCards View complete list of genes associated with diseases

Relevant External Links for TMOD1

Genetic Association Database (GAD)
TMOD1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMOD1
genes like me logo Genes that share disorders with TMOD1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TMOD1 Gene

Publications for TMOD1 Gene

  1. Molecular cloning and characterization of human fetal liver tropomodulin. A tropomyosin-binding protein. (PMID: 1370827) Sung LA … Chien S (The Journal of biological chemistry 1992) 2 3 4 22 60
  2. Genomic organization of mouse and human erythrocyte tropomodulin genes encoding the pointed end capping protein for the actin filaments. (PMID: 11054557) Chu X … Sung LA (Gene 2000) 3 4 22 60
  3. Erythrocyte tropomodulin binds to the N-terminus of hTM5, a tropomyosin isoform encoded by the gamma-tropomyosin gene. (PMID: 8002995) Sung LA … Lin JJ (Biochemical and biophysical research communications 1994) 3 4 22 60
  4. Leiomodin-3 dysfunction results in thin filament disorganization and nemaline myopathy. (PMID: 25250574) Yuen M … Clarke NF (The Journal of clinical investigation 2014) 3 4 60
  5. Mapping the tropomyosin isoform 5 binding site on human erythrocyte tropomodulin: further insights into E-Tmod/TM5 interaction. (PMID: 16297372) Vera C … Sung LA (Archives of biochemistry and biophysics 2005) 3 22 60

Products for TMOD1 Gene

Sources for TMOD1 Gene

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