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Aliases for TMIGD2 Gene

Aliases for TMIGD2 Gene

  • Transmembrane And Immunoglobulin Domain Containing 2 2 3 5
  • Immunoglobulin And Proline-Rich Receptor 1 3 4
  • CD28 Homologue 2 3
  • CD28 Homolog 3 4
  • IGPR-1 3 4
  • CD28H 3 4
  • IGPR1 3 4
  • Transmembrane And Immunoglobulin Domain-Containing Protein 2 Variant 2 3
  • Transmembrane And Immunoglobulin Domain-Containing Protein 2 Variant 3 3
  • Transmembrane And Immunoglobulin Domain-Containing Protein 2 3
  • Immunoglobulin-Containing And Proline-Rich Receptor-1 2
  • Immunoglobulin-Containing And Proline-Rich Receptor 1 3

External Ids for TMIGD2 Gene

Previous GeneCards Identifiers for TMIGD2 Gene

  • GC19M004244
  • GC19M004055

Summaries for TMIGD2 Gene

GeneCards Summary for TMIGD2 Gene

TMIGD2 (Transmembrane And Immunoglobulin Domain Containing 2) is a Protein Coding gene. Among its related pathways are T Cell Co-Signaling Pathway: Ligand-Receptor Interactions. GO annotations related to this gene include coreceptor activity.

UniProtKB/Swiss-Prot for TMIGD2 Gene

  • Plays a role in cell-cell interaction, cell migration, and angiogenesis. Through interaction with HHLA2, costimulates T-cells in the context of TCR-mediated activation. Enhances T-cell proliferation and cytokine production via an AKT-dependent signaling cascade.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMIGD2 Gene

Genomics for TMIGD2 Gene

Regulatory Elements for TMIGD2 Gene

Enhancers for TMIGD2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F004340 0.5 ENCODE 12.4 -39.9 -39859 3.5 HDGF PKNOX1 MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 STAP2 SH3GL1 LOC100287614 ENSG00000266959 DAPK3 ENSG00000267255 TMIGD2 FSD1 SHD CHAF1A
GH19F004347 0.2 ENCODE 12.4 -44.9 -44899 0.8 STAP2 FSD1 TMIGD2 SHD SH3GL1 CHAF1A MPND EIF1P6
GH19F004344 0.5 ENCODE 12.4 -41.8 -41804 0.1 BCOR ZNF263 FSD1 TMIGD2 SHD SH3GL1 CHAF1A EIF1P6 MPND
GH19F004359 0.2 ENCODE 12.3 -58.6 -58637 3.5 CTCF TEAD4 ZIC2 HIC1 ZFHX2 GLIS2 POLR2A PATZ1 ZNF600 E2F6 ENSG00000267769 CHAF1A UBXN6 SH3GL1 TMIGD2 FSD1 CCDC94 EBI3 ENSG00000267980 ENSG00000269318
GH19F004367 1.5 FANTOM5 Ensembl ENCODE 12.3 -72.2 -72239 14.8 MLX CREB3L1 DMAP1 ZNF143 ZNF263 NFYC TBX21 MEF2D SSRP1 GLIS1 ENSG00000267769 SEMA6B CACTIN CHAF1A ENSG00000267030 SH3GL1 UBXN6 CACTIN-AS1 FSD1 TMIGD2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TMIGD2 on UCSC Golden Path with GeneCards custom track

Genomic Location for TMIGD2 Gene

Chromosome:
19
Start:
4,292,227 bp from pter
End:
4,302,582 bp from pter
Size:
10,356 bases
Orientation:
Minus strand

Genomic View for TMIGD2 Gene

Genes around TMIGD2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMIGD2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMIGD2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMIGD2 Gene

Proteins for TMIGD2 Gene

  • Protein details for TMIGD2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96BF3-TMIG2_HUMAN
    Recommended name:
    Transmembrane and immunoglobulin domain-containing protein 2
    Protein Accession:
    Q96BF3
    Secondary Accessions:
    • Q6UW59

    Protein attributes for TMIGD2 Gene

    Size:
    282 amino acids
    Molecular mass:
    30675 Da
    Quaternary structure:
    • May form homophilic interactions that could regulate cell-cell interaction. Interacts with CACNB2, DST, MIA and NCKIPSD. Interacts with HHLA2.

    Alternative splice isoforms for TMIGD2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TMIGD2 Gene

Post-translational modifications for TMIGD2 Gene

Other Protein References for TMIGD2 Gene

Antibody Products

  • Abcam antibodies for TMIGD2
  • Santa Cruz Biotechnology (SCBT) Antibodies for TMIGD2

No data available for DME Specific Peptides for TMIGD2 Gene

Domains & Families for TMIGD2 Gene

Gene Families for TMIGD2 Gene

Protein Domains for TMIGD2 Gene

Suggested Antigen Peptide Sequences for TMIGD2 Gene

Graphical View of Domain Structure for InterPro Entry

Q96BF3

UniProtKB/Swiss-Prot:

TMIG2_HUMAN :
  • Contains 1 Ig-like (immunoglobulin-like) domain.
Domain:
  • Contains 1 Ig-like (immunoglobulin-like) domain.
genes like me logo Genes that share domains with TMIGD2: view

Function for TMIGD2 Gene

Molecular function for TMIGD2 Gene

UniProtKB/Swiss-Prot Function:
Plays a role in cell-cell interaction, cell migration, and angiogenesis. Through interaction with HHLA2, costimulates T-cells in the context of TCR-mediated activation. Enhances T-cell proliferation and cytokine production via an AKT-dependent signaling cascade.

Gene Ontology (GO) - Molecular Function for TMIGD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 23784006
GO:0015026 coreceptor activity IDA 23784006
genes like me logo Genes that share ontologies with TMIGD2: view
genes like me logo Genes that share phenotypes with TMIGD2: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TMIGD2 Gene

Localization for TMIGD2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TMIGD2 Gene

Cell membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TMIGD2 Gene COMPARTMENTS Subcellular localization image for TMIGD2 gene
Compartment Confidence
plasma membrane 5
extracellular 4
cytosol 1
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for TMIGD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IBA --
GO:0005886 plasma membrane IEA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TMIGD2: view

Pathways & Interactions for TMIGD2 Gene

genes like me logo Genes that share pathways with TMIGD2: view

Pathways by source for TMIGD2 Gene

1 R&D Systems pathway for TMIGD2 Gene

Interacting Proteins for TMIGD2 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000301272%0d%0a9606.ENSP00000358081%0d%0a
Selected Interacting proteins: ENSP00000301272 Q96BF3-TMIG2_HUMAN for TMIGD2 Gene via STRING IID

Symbol External ID(s) Details
HLA-B
HLA-A
HLA-C
HLA-DRB1
BAG3

Gene Ontology (GO) - Biological Process for TMIGD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001819 positive regulation of cytokine production IDA 23784006
GO:0002377 immunoglobulin production IBA --
GO:0006955 immune response IBA --
GO:0007165 signal transduction IEA --
GO:0031295 T cell costimulation IDA 23784006
genes like me logo Genes that share ontologies with TMIGD2: view

No data available for SIGNOR curated interactions for TMIGD2 Gene

Transcripts for TMIGD2 Gene

mRNA/cDNA for TMIGD2 Gene

(4) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(12) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMIGD2 Gene

Transmembrane and immunoglobulin domain containing 2:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMIGD2 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5
SP1:
SP2: -

Relevant External Links for TMIGD2 Gene

GeneLoc Exon Structure for
TMIGD2
ECgene alternative splicing isoforms for
TMIGD2

Expression for TMIGD2 Gene

mRNA expression in normal human tissues for TMIGD2 Gene

mRNA differential expression in normal tissues according to GTEx for TMIGD2 Gene

This gene is overexpressed in Whole Blood (x24.9) and Spleen (x5.4).

Protein differential expression in normal tissues from HIPED for TMIGD2 Gene

This gene is overexpressed in CD8 Tcells (51.9) and NK cells (17.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for TMIGD2 Gene



Protein tissue co-expression partners for TMIGD2 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TMIGD2 Gene:

TMIGD2

SOURCE GeneReport for Unigene cluster for TMIGD2 Gene:

Hs.263928

mRNA Expression by UniProt/SwissProt for TMIGD2 Gene:

Q96BF3-TMIG2_HUMAN
Tissue specificity: Widely expressed, mainly by epithelial and endothelial cells, including bronchial epithelial cells of lung, breast glandular and lobular epithelia cells, urothelium of the bladder, skin epidermis, epithelium of gastrointestinal, rectum, endometrial glands of the uterus, ureter, fallopian tube epithelium, colonic epithelium, small bowl epithelium, stomach epithelium, including both chief and parietal cells, trophoblastic epithelium of placenta, and pancreatic acinar cells (at protein level). Consistently expressed in veins and arteries (at protein level). Not detected in thyroid, cerebellum, cerebral cortex and thymus (at protein level). Expressed in lymphoid organs, with highest levels in thymus, spleen, peripheral blood lymphocytes and liver. In the thymus, expressed in CD4+ and CD8+ single- and double-positive cells, but not in immature CD4- and CD8- double-negative cells (at protein level). In peripheral blood mononuclear cells, highly expressed on CD56+ or CD16+ natural killer cells and CD3+ T-cells(at protein level). Not detected on B-cells(at protein level). Expressed in tonsils (at protein level).
genes like me logo Genes that share expression patterns with TMIGD2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for TMIGD2 Gene

Orthologs for TMIGD2 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TMIGD2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TMIGD2 34 35
  • 98.7 (n)
cow
(Bos Taurus)
Mammalia TMIGD2 34 35
  • 71.93 (n)
oppossum
(Monodelphis domestica)
Mammalia TMIGD2 35
  • 33 (a)
OneToOne
Species where no ortholog for TMIGD2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TMIGD2 Gene

ENSEMBL:
Gene Tree for TMIGD2 (if available)
TreeFam:
Gene Tree for TMIGD2 (if available)

Paralogs for TMIGD2 Gene

No data available for Paralogs for TMIGD2 Gene

Variants for TMIGD2 Gene

Sequence variations from dbSNP and Humsavar for TMIGD2 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10402370 -- 4,297,661(+) ACTAT(C/T)CTGGC intron-variant
rs10418253 -- 4,300,731(+) ggcag(C/G/T)gcaca intron-variant
rs10422247 -- 4,293,065(+) ttcac(A/G)ccatt intron-variant
rs10424457 -- 4,293,315(+) tgtag(C/T)agcgg intron-variant
rs111375981 -- 4,296,737(+) TCCTA(C/G)CAGCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMIGD2 Gene

Variant ID Type Subtype PubMed ID
esv2677475 CNV deletion 23128226
esv2718004 CNV deletion 23290073
esv3643495 CNV loss 21293372
esv3643497 CNV gain 21293372
nsv1109161 CNV deletion 24896259
nsv578442 CNV loss 21841781
nsv833717 CNV loss 17160897
nsv833718 CNV loss 17160897

Variation tolerance for TMIGD2 Gene

Residual Variation Intolerance Score: 95.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.30; 70.48% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TMIGD2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMIGD2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TMIGD2 Gene

Disorders for TMIGD2 Gene

Relevant External Links for TMIGD2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMIGD2

No disorders were found for TMIGD2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMIGD2 Gene

Publications for TMIGD2 Gene

  1. B7-H5 costimulates human T cells via CD28H. (PMID: 23784006) Zhu Y. … Chen L. (Nat Commun 2013) 2 3 4 64
  2. Identification of IGPR-1 as a novel adhesion molecule involved in angiogenesis. (PMID: 22419821) Rahimi N. … Meyer R.D. (Mol. Biol. Cell 2012) 2 3 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4 64
  5. Bcl2-associated athanogene 3 interactome analysis reveals a new role in modulating proteasome activity. (PMID: 23824909) Chen Y. … Ge F. (Mol. Cell Proteomics 2013) 3 64

Products for TMIGD2 Gene

Sources for TMIGD2 Gene

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