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Aliases for TMEM9B-AS1 Gene

Subcategory (RNA class) for TMEM9B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for TMEM9B-AS1 Gene

  • TMEM9B Antisense RNA 1 2 3 5
  • TMEM9B Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 11 Open Reading Frame 18 2
  • C11orf18 3

External Ids for TMEM9B-AS1 Gene

Previous HGNC Symbols for TMEM9B-AS1 Gene

  • C11orf18

Previous GeneCards Identifiers for TMEM9B-AS1 Gene

  • GC11P008987

Summaries for TMEM9B-AS1 Gene

GeneCards Summary for TMEM9B-AS1 Gene

TMEM9B-AS1 (TMEM9B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM9B-AS1 Gene

Genomics for TMEM9B-AS1 Gene

Regulatory Elements for TMEM9B-AS1 Gene

Enhancers for TMEM9B-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F008962 1.1 ENCODE 74.4 -0.3 -313 3.9 PKNOX1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF207 KLF13 TMEM9B-AS1 TMEM9B AKIP1 ENSG00000238387 ENSG00000223080
GH11F008905 1.1 Ensembl ENCODE 48.9 -58.0 -58003 3.3 TBP PKNOX1 INSM2 SIN3A BRCA1 RFX5 ZNF121 ZNF366 RCOR1 FOS TMEM9B-AS1 AKIP1 EIF3F SNORA3B WEE1 RPL21P97 ZNF143 ENSG00000223080 ASCL3 RPL27A
GH11F007962 1.4 Ensembl ENCODE 34.9 -997.9 -997943 8.2 HDGF PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 TMEM9B-AS1 EIF3F OLFML1 TUB ZNF214 NLRP10 OR10A3 AKIP1 CASC23 GC11M007966
GH11F008988 1.2 Ensembl ENCODE 34.9 +24.8 24826 1.4 HDAC1 ATF1 CBX3 GATA2 FOS CREM ZBTB2 JUNB CEBPB ZEB2 TMEM9B-AS1 AKIP1 TMEM9B GC11P008977 NRIP3
GH11F008825 1.5 FANTOM5 Ensembl ENCODE 26.5 -133.7 -133699 10.9 YBX3 HDGF HDAC1 PKNOX1 ZNF133 NFXL1 YBX1 GATA2 ZNF143 FOS TMEM9B-AS1 AKIP1 SCUBE2 WEE1 TMEM9B EIF3F RPL27A SNORA3A ENSG00000254665 ENSG00000254900
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TMEM9B-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TMEM9B-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000558052 -375 2601 PKNOX1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF207 KLF13

Genomic Location for TMEM9B-AS1 Gene

8,964,675 bp from pter
8,977,527 bp from pter
12,853 bases
Plus strand

Genomic View for TMEM9B-AS1 Gene

Genes around TMEM9B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM9B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM9B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM9B-AS1 Gene

Proteins for TMEM9B-AS1 Gene

Post-translational modifications for TMEM9B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM9B-AS1 Gene

Domains & Families for TMEM9B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMEM9B-AS1 Gene

Function for TMEM9B-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM9B-AS1 Gene

Localization for TMEM9B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TMEM9B-AS1 Gene

Pathways & Interactions for TMEM9B-AS1 Gene

SuperPathways for TMEM9B-AS1 Gene

No Data Available

Interacting Proteins for TMEM9B-AS1 Gene

Gene Ontology (GO) - Biological Process for TMEM9B-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TMEM9B-AS1 Gene

Transcripts for TMEM9B-AS1 Gene

mRNA/cDNA for TMEM9B-AS1 Gene

(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMEM9B-AS1 Gene

TMEM9B antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM9B-AS1 Gene

No ASD Table

Relevant External Links for TMEM9B-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TMEM9B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TMEM9B-AS1 Gene

SOURCE GeneReport for Unigene cluster for TMEM9B-AS1 Gene:

genes like me logo Genes that share expression patterns with TMEM9B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TMEM9B-AS1 Gene

Orthologs for TMEM9B-AS1 Gene

Evolution for TMEM9B-AS1 Gene

Gene Tree for TMEM9B-AS1 (if available)
Gene Tree for TMEM9B-AS1 (if available)

No data available for Orthologs for TMEM9B-AS1 Gene

Paralogs for TMEM9B-AS1 Gene

No data available for Paralogs for TMEM9B-AS1 Gene

Variants for TMEM9B-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM9B-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10532682 -- 8,973,118(+) GAACA(-/AATG)AATGA intron-variant
rs10689687 -- 8,965,293(+) GACAC(-/AG)GGATC intron-variant, upstream-variant-2KB
rs10709524 -- 8,976,462(+) ACCAG(-/A)AAAAA downstream-variant-500B
rs11042141 -- 8,965,506(+) GATCT(C/T)GGCTC intron-variant, upstream-variant-2KB
rs11042142 -- 8,965,624(+) TTTTT(C/T)TTTTT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TMEM9B-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv832062 CNV loss 17160897
nsv7215 OTHER inversion 18451855
nsv499766 OTHER inversion 21111241
nsv435923 CNV deletion 17901297
esv3891928 CNV gain 25118596
esv2759803 CNV gain 17122850

Relevant External Links for TMEM9B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMEM9B-AS1 Gene

Disorders for TMEM9B-AS1 Gene

Relevant External Links for TMEM9B-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for TMEM9B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM9B-AS1 Gene

Publications for TMEM9B-AS1 Gene

  1. Comparative genomic sequencing reveals a strikingly similar architecture of a conserved syntenic region on human chromosome 11p15.3 (including gene ST5) and mouse chromosome 7. (PMID: 11528127) Amid C. … Schmidt E.R. (Cytogenet. Cell Genet. 2001) 2 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64
  4. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. (PMID: 7566098) Adams M.D. … White O. (Nature 1995) 3 64

Products for TMEM9B-AS1 Gene

Sources for TMEM9B-AS1 Gene

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