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Aliases for TMEM98 Gene

Aliases for TMEM98 Gene

  • Transmembrane Protein 98 2 3 5
  • Protein TADA1 4
  • TADA1 3

External Ids for TMEM98 Gene

Previous GeneCards Identifiers for TMEM98 Gene

  • GC17P028280
  • GC17P031254
  • GC17P027440

Summaries for TMEM98 Gene

Entrez Gene Summary for TMEM98 Gene

  • This gene encodes a transmembrane protein. A missense mutation in this gene result in Nanophthalmos 4 (NNO4). Alternatively spliced transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Sep 2014]

GeneCards Summary for TMEM98 Gene

TMEM98 (Transmembrane Protein 98) is a Protein Coding gene. Diseases associated with TMEM98 include Nanophthalmos 4 and Microphthalmia.

Gene Wiki entry for TMEM98 Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM98 Gene

Genomics for TMEM98 Gene

Regulatory Elements for TMEM98 Gene

Enhancers for TMEM98 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F032818 1.2 Ensembl ENCODE 21.5 -108.8 -108799 1.0 HDAC1 ATF1 ARNT TBL1XR1 ZNF366 ELK1 GATA2 ETV6 CREM ZBTB11 TMEM98 ENSG00000226377 MYO1D LOC101927198 GC17M032752
GH17F032875 1 ENCODE 25.4 -50.1 -50108 4.5 ATF1 PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A ZNF2 GLIS2 ELK1 ZNF143 TMEM98 MYO1D GC17P032879 LOC102724715
GH17F032893 0.9 ENCODE 28 -33.3 -33250 2.0 HDAC1 PKNOX1 CBX3 ATF1 ARNT TBL1XR1 GATA2 ETV6 CREM ZBTB2 TMEM98 MYO1D ENSG00000236377 GC17P032879
GH17F032896 1.3 FANTOM5 ENCODE 17.4 -29.5 -29495 3.4 HDGF PKNOX1 ATF1 ARNT CREB3L1 ELK1 GATA2 NCOA1 REST CREB3 TMEM98 ENSG00000236377 GC17P032879
GH17F032927 1 ENCODE 21.5 +0.6 576 3.0 HDGF ARNT MLX ZFP64 ARID4B DMAP1 ZNF121 ZNF143 ZNF202 NFYC SUZ12 TMEM98 PIR43668
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TMEM98 on UCSC Golden Path with GeneCards custom track

Promoters for TMEM98 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001344420 690 2001 HDGF ARNT NFRKB ZNF76 DMAP1 ZBTB40 ZSCAN9 ZNF143 EGR2 SMARCA5

Genomic Location for TMEM98 Gene

Chromosome:
17
Start:
32,927,910 bp from pter
End:
32,945,106 bp from pter
Size:
17,197 bases
Orientation:
Plus strand

Genomic View for TMEM98 Gene

Genes around TMEM98 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM98 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM98 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM98 Gene

Proteins for TMEM98 Gene

  • Protein details for TMEM98 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y2Y6-TMM98_HUMAN
    Recommended name:
    Transmembrane protein 98
    Protein Accession:
    Q9Y2Y6
    Secondary Accessions:
    • E1P631
    • Q9UFK2

    Protein attributes for TMEM98 Gene

    Size:
    226 amino acids
    Molecular mass:
    24611 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TMEM98 Gene

Post-translational modifications for TMEM98 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for TMEM98 Gene

Domains & Families for TMEM98 Gene

Protein Domains for TMEM98 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TMEM98 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9Y2Y6

UniProtKB/Swiss-Prot:

TMM98_HUMAN :
  • Belongs to the TMEM98 family.
Family:
  • Belongs to the TMEM98 family.
genes like me logo Genes that share domains with TMEM98: view

No data available for Gene Families for TMEM98 Gene

Function for TMEM98 Gene

genes like me logo Genes that share phenotypes with TMEM98: view

Human Phenotype Ontology for TMEM98 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for TMEM98 Gene

MGI Knock Outs for TMEM98:

Animal Model Products

  • Taconic Biosciences Mouse Models for TMEM98

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Transcription Factor Targets and HOMER Transcription for TMEM98 Gene

Localization for TMEM98 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TMEM98 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TMEM98 gene
Compartment Confidence
endoplasmic reticulum 5
extracellular 3
nucleus 3
cytosol 2
plasma membrane 1

Gene Ontology (GO) - Cellular Components for TMEM98 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005783 endoplasmic reticulum IDA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TMEM98: view

Pathways & Interactions for TMEM98 Gene

SuperPathways for TMEM98 Gene

No Data Available

Interacting Proteins for TMEM98 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000378138%0d%0a9606.ENSP00000344818%0d%0a9606.ENSP00000362639%0d%0a
Selected Interacting proteins: Q9Y2Y6-TMM98_HUMAN ENSP00000378138 for TMEM98 Gene via IID STRING MINT

Gene Ontology (GO) - Biological Process for TMEM98 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM98 Gene

Transcripts for TMEM98 Gene

Unigene Clusters for TMEM98 Gene

Transmembrane protein 98:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM98 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b
SP1: - -
SP2: - -
SP3: - - -
SP4: -
SP5: - -
SP6:

Relevant External Links for TMEM98 Gene

GeneLoc Exon Structure for
TMEM98
ECgene alternative splicing isoforms for
TMEM98

Expression for TMEM98 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TMEM98 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for TMEM98 Gene

This gene is overexpressed in Testis (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for TMEM98 Gene



Protein tissue co-expression partners for TMEM98 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TMEM98 Gene:

TMEM98

SOURCE GeneReport for Unigene cluster for TMEM98 Gene:

Hs.3447

mRNA Expression by UniProt/SwissProt for TMEM98 Gene:

Q9Y2Y6-TMM98_HUMAN
Tissue specificity: Expressed in the eye, particularly in corneal endothelium, iris, ciliary body, sclera, optic nerve, optic nerve head, and retina.
genes like me logo Genes that share expression patterns with TMEM98: view

Primer Products

No data available for mRNA differential expression in normal tissues for TMEM98 Gene

Orthologs for TMEM98 Gene

This gene was present in the common ancestor of animals.

Orthologs for TMEM98 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TMEM98 34 35
  • 99.85 (n)
oppossum
(Monodelphis domestica)
Mammalia TMEM98 35
  • 96 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TMEM98 35
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TMEM98 34 35
  • 90.56 (n)
cow
(Bos Taurus)
Mammalia TMEM98 34 35
  • 90.41 (n)
rat
(Rattus norvegicus)
Mammalia Tmem98 34
  • 89.23 (n)
mouse
(Mus musculus)
Mammalia Tmem98 34 16 35
  • 88.5 (n)
lizard
(Anolis carolinensis)
Reptilia TMEM98 35
  • 85 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tmem98 34
  • 74.48 (n)
zebrafish
(Danio rerio)
Actinopterygii tmem98 34 35
  • 74.5 (n)
worm
(Caenorhabditis elegans)
Secernentea K10C3.4 35
  • 15 (a)
OneToOne
Species where no ortholog for TMEM98 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TMEM98 Gene

ENSEMBL:
Gene Tree for TMEM98 (if available)
TreeFam:
Gene Tree for TMEM98 (if available)

Paralogs for TMEM98 Gene

Pseudogenes.org Pseudogenes for TMEM98 Gene

genes like me logo Genes that share paralogs with TMEM98: view

No data available for Paralogs for TMEM98 Gene

Variants for TMEM98 Gene

Sequence variations from dbSNP and Humsavar for TMEM98 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs587777690 Nanophthalmos 4 (NNO4) [MIM:615972], Pathogenic 32,940,889(+) CGGCT(C/G)CTGAG reference, missense
rs869312733 Pathogenic 32,940,899(+) GGAGC(A/C)TTTGG reference, missense
rs869312734 Pathogenic 32,933,278(+) TCTGG(CTAGGACCACTTC/GATCGTGGAA)CCATG intron-variant
rs1042910 -- 32,940,855(+) ACGGG(A/G)GGCCT reference, synonymous-codon
rs10600747 -- 32,930,731(+) TACTA(-/AT)ATGTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM98 Gene

Variant ID Type Subtype PubMed ID
esv24161 CNV loss 19812545
esv2667652 CNV deletion 23128226
nsv510705 CNV deletion 20534489
nsv833417 CNV gain 17160897

Variation tolerance for TMEM98 Gene

Residual Variation Intolerance Score: 40.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.82; 34.17% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TMEM98 Gene

Human Gene Mutation Database (HGMD)
TMEM98
SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM98

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TMEM98 Gene

Disorders for TMEM98 Gene

MalaCards: The human disease database

(2) MalaCards diseases for TMEM98 Gene - From: OMIM, ClinVar, Orphanet, Swiss-Prot, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
nanophthalmos 4
  • nanophthalmia 4
microphthalmia
  • microphthalmos
- elite association - COSMIC cancer census association via MalaCards

UniProtKB/Swiss-Prot

TMM98_HUMAN
  • Nanophthalmos 4 (NNO4) [MIM:615972]: A rare disorder of eye development characterized by extreme hyperopia (farsightedness) and small functional eyes. The cornea and lens are normal in size and shape. Hyperopia occurs because insufficient growth along the visual axis places these lensing components too close to the retina. Nanophthalmic eyes show considerable thickening of both the choroidal vascular bed and scleral coat, which provide nutritive and structural support for the retina. {ECO:0000269 PubMed:24852644}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for TMEM98

Genetic Association Database (GAD)
TMEM98
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMEM98
genes like me logo Genes that share disorders with TMEM98: view

No data available for Genatlas for TMEM98 Gene

Publications for TMEM98 Gene

  1. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 2 3 4 64
  2. Mutation in TMEM98 in a large white kindred with autosomal dominant nanophthalmos linked to 17p12-q12. (PMID: 24852644) Awadalla M.S. … Craig J.E. (JAMA Ophthalmol. 2014) 3 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4 64
  5. Novel TMEM98 mutations in pedigrees with autosomal dominant nanophthalmos. (PMID: 26392740) Khorram D. … Fingert J.H. (Mol. Vis. 2015) 3 64

Products for TMEM98 Gene

Sources for TMEM98 Gene

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