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Aliases for TMEM78 Gene

Aliases for TMEM78 Gene

  • Transmembrane Protein 78 2 3 5

External Ids for TMEM78 Gene

Previous GeneCards Identifiers for TMEM78 Gene

  • GC00U921679
  • GC01P227452
  • GC01U902162
  • GC01P229385

Summaries for TMEM78 Gene

GeneCards Summary for TMEM78 Gene

TMEM78 (Transmembrane Protein 78) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM78 Gene

Genomics for TMEM78 Gene

Regulatory Elements for TMEM78 Gene

Enhancers for TMEM78 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F229201 1.6 FANTOM5 Ensembl ENCODE 11 -45.6 -45564 4.3 HDGF PKNOX1 ATF1 CREB3L1 ARID4B SIN3A GLI4 ZNF2 ZNF121 FOS LOC105373158 NUP133 HIST3H3 URB2 ENSG00000233920 TMEM78 ACTA1 ENSG00000269890
GH01F229091 1.6 FANTOM5 Ensembl ENCODE 10.6 -156.2 -156245 3.9 PKNOX1 ARNT FEZF1 ZNF2 YY1 ZNF143 FOS ZNF263 SP3 JUNB NUP133 ENSG00000269890 C1orf35 HIST3H3 HMGN2P19 TMEM78 URB2 RHOU ISCA1P2 GC01M229181
GH01F228781 1.7 FANTOM5 Ensembl ENCODE 9.9 -466.6 -466574 3.7 ARID4B FEZF1 ZNF2 ZNF302 ZNF416 FOS ZNF263 REST KAT8 MIER3 NUP133 CICP26 C1orf35 ENSG00000269890 PRSS38 TAF5L ABCB10 LOC100421842 ENSG00000233920 HMGB1P26
GH01F229022 1.6 FANTOM5 Ensembl ENCODE 10.4 -223.0 -223036 7.6 ATF1 ARID4B DMAP1 ZNF48 YY1 SLC30A9 FOS ZNF263 SP5 JUNB ENSG00000233920 LOC100421842 HMGB1P26 LINC01682 URB2 HIST3H3 HMGN2P19 TMEM78 ENSG00000271399 ENSG00000269890
GH01F229153 1.5 FANTOM5 Ensembl ENCODE 10.5 -92.4 -92420 7.2 ELF3 ARID4B ZSCAN9 RAD21 SCRT2 FOS MIXL1 EGR2 PAF1 CEBPB ENSG00000233920 TMEM78 LOC105373158 CCSAP RHOU GC01M229181 ISCA1P2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TMEM78 on UCSC Golden Path with GeneCards custom track

Genomic Location for TMEM78 Gene

Chromosome:
1
Start:
229,249,636 bp from pter
End:
229,251,810 bp from pter
Size:
2,175 bases
Orientation:
Plus strand

Genomic View for TMEM78 Gene

Genes around TMEM78 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM78 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM78 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TMEM78 Gene

Proteins for TMEM78 Gene

  • Protein details for TMEM78 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T7P6-TMM78_HUMAN
    Recommended name:
    Transmembrane protein 78
    Protein Accession:
    Q5T7P6
    Secondary Accessions:
    • Q8N802

    Protein attributes for TMEM78 Gene

    Size:
    136 amino acids
    Molecular mass:
    15193 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TMEM78 Gene

Post-translational modifications for TMEM78 Gene

No Post-translational modifications

Other Protein References for TMEM78 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TMEM78 Gene

Domains & Families for TMEM78 Gene

Protein Domains for TMEM78 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for TMEM78 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TMEM78: view

No data available for Gene Families and UniProtKB/Swiss-Prot for TMEM78 Gene

Function for TMEM78 Gene

Phenotypes for TMEM78 Gene

GenomeRNAi human phenotypes for TMEM78:
genes like me logo Genes that share phenotypes with TMEM78: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TMEM78 Gene

Localization for TMEM78 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TMEM78 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TMEM78 gene
Compartment Confidence
extracellular 3
plasma membrane 2

Gene Ontology (GO) - Cellular Components for TMEM78 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TMEM78: view

Pathways & Interactions for TMEM78 Gene

SuperPathways for TMEM78 Gene

No Data Available

Interacting Proteins for TMEM78 Gene

Gene Ontology (GO) - Biological Process for TMEM78 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM78 Gene

Transcripts for TMEM78 Gene

mRNA/cDNA for TMEM78 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMEM78 Gene

Transmembrane protein 78:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM78 Gene

No ASD Table

Relevant External Links for TMEM78 Gene

GeneLoc Exon Structure for
TMEM78
ECgene alternative splicing isoforms for
TMEM78

Expression for TMEM78 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TMEM78 Gene

mRNA differential expression in normal tissues according to GTEx for TMEM78 Gene

This gene is overexpressed in Testis (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of TMEM78 Gene:

TMEM78

SOURCE GeneReport for Unigene cluster for TMEM78 Gene:

Hs.638407
genes like me logo Genes that share expression patterns with TMEM78: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TMEM78 Gene

Orthologs for TMEM78 Gene

Evolution for TMEM78 Gene

ENSEMBL:
Gene Tree for TMEM78 (if available)
TreeFam:
Gene Tree for TMEM78 (if available)

No data available for Orthologs for TMEM78 Gene

Paralogs for TMEM78 Gene

(10) SIMAP similar genes for TMEM78 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with TMEM78: view

No data available for Paralogs for TMEM78 Gene

Variants for TMEM78 Gene

Variation tolerance for TMEM78 Gene

Gene Damage Index Score: 6.68; 78.52% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TMEM78 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM78

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for TMEM78 Gene

Disorders for TMEM78 Gene

Relevant External Links for TMEM78

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMEM78

No disorders were found for TMEM78 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM78 Gene

Publications for TMEM78 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64

Products for TMEM78 Gene

Sources for TMEM78 Gene

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