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Aliases for TMEM72-AS1 Gene

Subcategory (RNA class) for TMEM72-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TMEM72-AS1 Gene

  • TMEM72 Antisense RNA 1 2 3 5
  • TMEM72 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TMEM72-AS1 Gene

Previous GeneCards Identifiers for TMEM72-AS1 Gene

  • GC10M045308

Summaries for TMEM72-AS1 Gene

GeneCards Summary for TMEM72-AS1 Gene

TMEM72-AS1 (TMEM72 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM72-AS1 Gene

Genomics for TMEM72-AS1 Gene

Regulatory Elements for TMEM72-AS1 Gene

Enhancers for TMEM72-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F044932 0.9 Ensembl ENCODE 27.8 +24.6 24589 5.4 PKNOX1 MLX ZFP64 ARID4B DMAP1 ZNF48 GLIS2 GATA2 ZNF143 ZNF263 TMEM72-AS1 AGAP10P AGAP4 RASSF4 ZNF22 C10orf25 TMEM72 ENSG00000223462 ENSG00000234504
GH10F044971 1.4 FANTOM5 Ensembl ENCODE 18.6 -20.2 -20154 16.9 MLX CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC AGAP4 C10orf25 ZNF22 TMEM72-AS1 RASSF4 FAM21FP ENSG00000223462 ENSG00000234504 TMEM72 CEP164P1
GH10F044955 0.5 ENCODE 17 +3.6 3602 0.9 SMARCA4 ATF3 HNF4G IRF1 SETDB1 TMEM72-AS1 RASSF4 ENSG00000223462
GH10F044957 1 FANTOM5 ENCODE 16.3 -4.1 -4128 12.3 HDGF PKNOX1 MLX CREB3L1 ARID4B SIN3A DMAP1 YBX1 ZNF2 YY1 ZNF22 TMEM72-AS1 AGAP4 C10orf25 ENSG00000223462 ENSG00000234504 TMEM72 RASSF4 CEP164P1 ALOX5
GH10F044952 1 Ensembl ENCODE 12.9 +6.6 6597 1.6 SOX13 SAP130 TEAD4 ZNF644 RARA TEAD3 NR2F6 CREM HOMEZ ZNF652 TMEM72-AS1 RASSF4 AGAP4 ENSG00000223462
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TMEM72-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TMEM72-AS1 Gene

Chromosome:
10
Start:
44,811,024 bp from pter
End:
44,959,689 bp from pter
Size:
148,666 bases
Orientation:
Minus strand

Genomic View for TMEM72-AS1 Gene

Genes around TMEM72-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM72-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM72-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM72-AS1 Gene

Proteins for TMEM72-AS1 Gene

Post-translational modifications for TMEM72-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM72-AS1 Gene

Domains & Families for TMEM72-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMEM72-AS1 Gene

Function for TMEM72-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM72-AS1 Gene

Localization for TMEM72-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TMEM72-AS1 Gene

Pathways & Interactions for TMEM72-AS1 Gene

SuperPathways for TMEM72-AS1 Gene

No Data Available

Interacting Proteins for TMEM72-AS1 Gene

Gene Ontology (GO) - Biological Process for TMEM72-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM72-AS1 Gene

Transcripts for TMEM72-AS1 Gene

mRNA/cDNA for TMEM72-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMEM72-AS1 Gene

TMEM72 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM72-AS1 Gene

No ASD Table

Relevant External Links for TMEM72-AS1 Gene

GeneLoc Exon Structure for
TMEM72-AS1
ECgene alternative splicing isoforms for
TMEM72-AS1

Expression for TMEM72-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TMEM72-AS1 Gene

SOURCE GeneReport for Unigene cluster for TMEM72-AS1 Gene:

Hs.568801
genes like me logo Genes that share expression patterns with TMEM72-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TMEM72-AS1 Gene

Orthologs for TMEM72-AS1 Gene

Evolution for TMEM72-AS1 Gene

ENSEMBL:
Gene Tree for TMEM72-AS1 (if available)
TreeFam:
Gene Tree for TMEM72-AS1 (if available)

No data available for Orthologs for TMEM72-AS1 Gene

Paralogs for TMEM72-AS1 Gene

No data available for Paralogs for TMEM72-AS1 Gene

Variants for TMEM72-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM72-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs587777896 untested 44,934,719(+) GAAAG(A/C)TGCCC intron-variant, reference, missense
rs1002321 -- 44,876,329(+) GTGTT(A/C)CTAGA intron-variant
rs1018702 -- 44,875,970(-) CTGTA(A/G)TTGGA intron-variant
rs1034161 -- 44,876,601(-) GCTGA(C/T)ATGGG intron-variant
rs10450472 -- 44,871,388(+) tGAAT(A/G)CACTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM72-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1104n54 CNV gain 21841781
dgv1105n54 CNV gain 21841781
dgv210e212 CNV gain 25503493
dgv21e55 CNV gain 17911159
dgv438n106 CNV deletion 24896259
dgv729n100 CNV gain 25217958
dgv80n27 CNV gain 19166990
esv2666500 CNV deletion 23128226
esv2678805 CNV deletion 23128226
esv27175 CNV loss 19812545
esv2736072 CNV deletion 23290073
esv2736083 CNV deletion 23290073
esv2736094 CNV deletion 23290073
esv2736105 CNV deletion 23290073
esv2760155 CNV gain 21179565
esv2762860 CNV loss 21179565
esv32821 CNV gain+loss 17666407
esv3546235 CNV deletion 23714750
esv3576560 CNV gain 25503493
esv3623068 CNV gain 21293372
esv3623072 CNV gain 21293372
esv3623073 CNV loss 21293372
esv3623074 CNV loss 21293372
esv3623075 CNV loss 21293372
esv3623076 CNV gain 21293372
nsv1035235 CNV loss 25217958
nsv1068307 CNV deletion 25765185
nsv1110671 CNV insertion 24896259
nsv1120219 CNV tandem duplication 24896259
nsv1153452 CNV deletion 26484159
nsv24641 CNV insertion 16902084
nsv466909 CNV gain 19166990
nsv470933 CNV gain 18288195
nsv474623 CNV novel sequence insertion 20440878
nsv517161 CNV gain+loss 19592680
nsv550714 CNV gain 21841781
nsv6521 CNV insertion 18451855
nsv818757 CNV loss 17921354
nsv831844 CNV gain 17160897
nsv831845 CNV gain 17160897
nsv831846 CNV loss 17160897

Relevant External Links for TMEM72-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM72-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMEM72-AS1 Gene

Disorders for TMEM72-AS1 Gene

Relevant External Links for TMEM72-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMEM72-AS1

No disorders were found for TMEM72-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM72-AS1 Gene

Publications for TMEM72-AS1 Gene

  1. Genome-wide association study identifies BICD1 as a susceptibility gene for emphysema. (PMID: 20709820) Kong X. … Pillai S.G. (Am. J. Respir. Crit. Care Med. 2011) 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for TMEM72-AS1 Gene

Sources for TMEM72-AS1 Gene

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