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TMEM65 Gene

protein-coding   GIFtS: 43
GCID: GC08M125394

Transmembrane Protein 65

  Search for TMEM65
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Transmembrane Protein 651 2

External Ids:    HGNC: 252031   Entrez Gene: 1573782   Ensembl: ENSG000001649837   UniProtKB: Q6PI783   

Export aliases for TMEM65 gene to outside databases

Previous GC identifer: GC08M120650


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for TMEM65 Gene:
TMEM65 (transmembrane protein 65) is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000008.10  NC_018919.2  NT_008046.17  
Regulatory elements:
   Regulatory transcription factor binding sites in the TMEM65 gene promoter:
         ER-alpha   AhR   ISGF-3   FOXF2   Pbx1a   POU3F1   HNF-3beta   NF-AT   Arnt   Ik-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTMEM65 promoter sequence
   Search Chromatin IP Primers for TMEM65

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat TMEM65


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 8q24.13   Ensembl cytogenetic band:  8q24.13   HGNC cytogenetic band: 8q24.13

TMEM65 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TMEM65 gene location

GeneLoc information about chromosome 8         GeneLoc Exon Structure

GeneLoc location for GC08M125394:  view genomic region     (about GC identifiers)

Start:
125,323,159 bp from pter      End:
125,384,940 bp from pter
Size:
61,782 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: TMM65_HUMAN, Q6PI78 (See protein sequence)
Recommended Name: Transmembrane protein 65  
Size: 240 amino acids; 25498 Da
Sequence caution: Sequence=AAH32396.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Secondary accessions: Q8N5G8 Q8WVK5

Explore the universe of human proteins at neXtProt for TMEM65: NX_Q6PI78

Explore proteomics data for TMEM65 at MOPED


See TMEM65 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_919267.2  
ENSEMBL proteins: 
 ENSP00000297632  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro protein domain:
 IPR019537 Transmembrane_protein_65

Graphical View of Domain Structure for InterPro Entry Q6PI78

ProtoNet protein and cluster: Q6PI78


Find genes that share domains with TMEM65           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Animal Models:
   inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for TMEM65
   inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for TMEM65

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miRNA
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hsa-let-7b-5p (MIRT032438), hsa-mir-33a-5p (MIRT028186)

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Selected qRT-PCR Assays for microRNAs that regulate TMEM65 (see all 56):
hsa-miR-323-3p hsa-miR-607 hsa-miR-640 hsa-let-7d hsa-miR-29a hsa-miR-550a* hsa-miR-374c hsa-let-7g
SwitchGear 3'UTR luciferase reporter plasmidTMEM65 3' UTR sequence
Inhib. RNA
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Predesigned siRNA for gene silencing in human, mouse, rat TMEM65

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Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TMEM65

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
TMM65_HUMAN, Q6PI78: Membrane; Multi-pass membrane protein (Potential)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
plasma membrane3
mitochondrion2
nucleus1

Gene Ontology (GO): 2 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005739mitochondrion IEA--
GO:0016021integral component of membrane IEA--

Find genes that share ontologies with TMEM65           About GenesLikeMe


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for TMEM65
Interactions:

    Search GeneGlobe Interaction Network for TMEM65

STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

1 Interacting protein for TMEM65 (ENSP000002976324) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
ELAVL1ENSP000003852694STRING: ENSP00000385269
About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for TMEM65 (TMM65)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for TMEM65 gene: 
NM_194291.2  

Unigene Cluster for TMEM65:

Transmembrane protein 65
Hs.187646  [show with all ESTs]
Unigene Representative Sequence: NM_194291
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000297632(uc010mdl.3)
miRNA
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Selected qRT-PCR Assays for microRNAs that regulate TMEM65 (see all 56):
hsa-miR-323-3p hsa-miR-607 hsa-miR-640 hsa-let-7d hsa-miR-29a hsa-miR-550a* hsa-miR-374c hsa-let-7g
SwitchGear 3'UTR luciferase reporter plasmidTMEM65 3' UTR sequence
Inhib. RNA
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Predesigned siRNA for gene silencing in human, mouse, rat TMEM65
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Primer
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  QuantiTect SYBR Green Assays in human, mouse, rat TMEM65
  QuantiFast Probe-based Assays in human, mouse, rat TMEM65

Additional mRNA sequence: 

BC017881.1 BC032396.1 BC041379.1 

5 DOTS entries:

DT.100685402  DT.121485300  DT.100653494  DT.95368251  DT.433409 

Selected AceView cDNA sequences (see all 62):

AA594779 BM055024 AA318471 CK904892 BE047139 BM679703 CR610944 BQ433192 
BM055302 AI628363 AW300050 AI797245 BF594757 AA485369 BC017881 CA848355 
CK904893 CA848650 BE326786 AI312867 NM_194291 BC032396 AI394240 BX431036 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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TMEM65 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
TMEM65 Expression
About this image

TMEM65 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

TMEM65 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.187646
    Custom PCR Arrays for TMEM65
Primer
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QuantiFast Probe-based Assays in human, mouse, rat TMEM65
In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TMEM65

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals.

Orthologs for TMEM65 gene from Selected species (see all 16)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Tmem651 , 5 transmembrane protein 651, 5 89.46(n)1
91.03(a)1
  15 (25.09 cM)5
748681  NM_175212.41  NP_780421.21 
 587822695 
chicken
(Gallus gallus)
Aves TMEM651 transmembrane protein 65 84.66(n)
87.5(a)
  428387  NM_001031507.1  NP_001026678.1 
lizard
(Anolis carolinensis)
Reptilia TMEM656
transmembrane protein 65
72(a)
1 ↔ 1
4(6324371-6350323)
African clawed frog
(Xenopus laevis)
Amphibia Xl.139832 Xenopus laevis transcribed sequence with weak similarity to protein refNP_501284.1 (C.elegans) C33H5.19.p [Caenorhabditis elegans] less 77.68(n)    48051019 
zebrafish
(Danio rerio)
Actinopterygii tmem651 transmembrane protein 65 64.29(n)
67.58(a)
  100005403  NM_001128812.1  NP_001122284.1 
fruit fly
(Drosophila melanogaster)
Insecta CG177156
--
27(a)
1 ↔ 1
2L(22736952-22747273)
worm
(Caenorhabditis elegans)
Secernentea tag-3216
Protein TAG-321 (tag-321) mRNA, complete cds
38(a)
1 ↔ 1
IV(7782598-7783853) WBGene00044325


ENSEMBL Gene Tree for TMEM65 (if available)
TreeFam Gene Tree for TMEM65 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for TMEM65 (see all 1141)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 8 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1426491181,2
C--125322672(+) TGATG-/TCCC  
        
TCCCT
1 -- ds50010--------
rs792687751,2
--125322702(+) GACAGG/TCTTCA 1 -- ds50011Minor allele frequency- T:0.01WA 118
rs1857013551,2
--125322743(+) TATTCA/GTAGTG 1 -- ds50010--------
rs1903676001,2
--125322957(+) GATCCA/TAAGCC 1 -- ds50010--------
rs127079071,2
C,F,A,H--125323011(+) ACCAGT/CTTCTA 1 -- ds500120Minor allele frequency- C:0.09NS EA NA 2074
rs1827792921,2
--125323149(+) ACATAA/GAGATA 1 -- ds50010--------
rs1469948421,2
C--125323260(+) GCTCAC/TACAAA 1 -- ut310--------
rs801866821,2
C,F--125323295(+) CATTAC/TCTTCA 1 -- ut313Minor allele frequency- T:0.06WA NA EA 358
rs1380862961,2
--125323322(+) GAAAAA/GGAATA 1 -- ut310--------
rs1874940091,2
--125323442(+) CATACA/GCTGAT 1 -- ut310--------

HapMap Linkage Disequilibrium report for TMEM65 (125323159 - 125384940 bp)

Structural Variations
     Database of Genomic Variants (DGV) 4 variations for TMEM65:    About this table    
Variant IDTypeSubtypePubMed ID
esv2669472CNV Deletion23128226
nsv521356CNV Loss19592680
nsv527751CNV Loss19592680
nsv516190CNV Loss19592680

Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing TMEM65
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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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Find genes that share disorders with TMEM65           About GenesLikeMe

Genetic Association Database (GAD): TMEM65
Human Genome Epidemiology (HuGE) Navigator: TMEM65 (1 document)

Export disorders for TMEM65 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for TMEM65 gene integrated from 10 sources:
(articles sorted by number of sources associating them with TMEM65)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PubMed id 20877624)1, 4 Hendrickson S.L....O'Brien S.J. (PLoS ONE 2010)
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  4. Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases. (PubMed id 24250222)1 Satoh J....Yamamoto Y. (Gene Regul Syst Bio 2013)
  5. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (Cell 2012)
  6. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (BMC Syst. Biol. 2011)
  7. Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201)1 Abdelmohsen K....Gorospe M. (EMBO J. 2009)
  8. DNA sequence and analysis of human chromosome 8. (PubMed id 16421571)2 Nusbaum C....Lander E.S. (Nature 2006)
  9. Normalization and subtraction: two approaches to facilitate gene discovery. (PubMed id 8889548)1 Bonaldo M.F.... Soares M.B. (Genome Res. 1996)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 157378 HGNC: 25203 AceView: LOC157378 Ensembl:ENSG00000164983 euGenes: HUgn157378
ECgene: TMEM65 H-InvDB: TMEM65

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for TMEM65 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for TMEM65 gene:
Search GeneIP for patents involving TMEM65

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014

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