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Aliases for TMEM51-AS1 Gene

Subcategory (RNA class) for TMEM51-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TMEM51-AS1 Gene

  • TMEM51 Antisense RNA 1 2 3 5
  • Chromosome 1 Open Reading Frame 126 2
  • C1orf126 3

External Ids for TMEM51-AS1 Gene

Previous HGNC Symbols for TMEM51-AS1 Gene

  • C1orf126

Previous GeneCards Identifiers for TMEM51-AS1 Gene

  • GC01M015439

Summaries for TMEM51-AS1 Gene

GeneCards Summary for TMEM51-AS1 Gene

TMEM51-AS1 (TMEM51 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM51-AS1 Gene

Genomics for TMEM51-AS1 Gene

Regulatory Elements for TMEM51-AS1 Gene

Enhancers for TMEM51-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F015150 0.9 Ensembl ENCODE 19 -2.9 -2939 9.3 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF143 FOS ZNF263 SP3 TMEM51 TMEM51-AS1 ENSG00000237938 SPEN C1orf195
GH01F015175 1.3 Ensembl ENCODE 11.2 -26.2 -26187 6.3 PKNOX1 ATF1 SIN3A GATA2 FOS SP5 REST ZNF623 SMARCA4 PBX2 TMEM51 TMEM51-AS1 C1orf195 LOC100420251
GH01F015171 0.9 Ensembl ENCODE 11.1 -20.9 -20911 3.7 PKNOX1 MLX ZFP64 ARID4B ZNF2 ZNF121 ZNF143 FOS SP5 MXD4 FBLIM1 ENSG00000224621 ENSG00000227959 TMEM51 EPHA2 TMEM51-AS1 C1orf195 LOC100420251
GH01F015167 0.5 Ensembl ENCODE 10.8 -16.3 -16253 3.3 CTCF HLF SMC3 FOS SPI1 RELA TMEM51 TMEM51-AS1 C1orf195
GH01F015196 0.6 Ensembl ENCODE 10.7 -47.9 -47865 8.1 HDGF PKNOX1 ARNT MLX CREB3L1 ARID4B SIN3A DMAP1 FEZF1 ZNF2 ENSG00000237938 TMEM51-AS1 SPEN TMEM51 RPS16P1 GC01M015197 LOC100421184
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TMEM51-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TMEM51-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000531072 -1436 3001 ATF1 MLX ARID4B SIN3A ZNF2 GLIS2 ZNF143 ZNF263 SP3 SP5

Genomic Location for TMEM51-AS1 Gene

Chromosome:
1
Start:
15,111,815 bp from pter
End:
15,152,464 bp from pter
Size:
40,650 bases
Orientation:
Minus strand

Genomic View for TMEM51-AS1 Gene

Genes around TMEM51-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM51-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM51-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM51-AS1 Gene

Proteins for TMEM51-AS1 Gene

Post-translational modifications for TMEM51-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM51-AS1 Gene

Domains & Families for TMEM51-AS1 Gene

Suggested Antigen Peptide Sequences for TMEM51-AS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for TMEM51-AS1 Gene

Function for TMEM51-AS1 Gene

Phenotypes for TMEM51-AS1 Gene

genes like me logo Genes that share phenotypes with TMEM51-AS1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM51-AS1 Gene

Localization for TMEM51-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TMEM51-AS1 Gene

Pathways & Interactions for TMEM51-AS1 Gene

SuperPathways for TMEM51-AS1 Gene

No Data Available

Interacting Proteins for TMEM51-AS1 Gene

Gene Ontology (GO) - Biological Process for TMEM51-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM51-AS1 Gene

Transcripts for TMEM51-AS1 Gene

mRNA/cDNA for TMEM51-AS1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(22) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMEM51-AS1 Gene

TMEM51 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM51-AS1 Gene

No ASD Table

Relevant External Links for TMEM51-AS1 Gene

GeneLoc Exon Structure for
TMEM51-AS1
ECgene alternative splicing isoforms for
TMEM51-AS1

Expression for TMEM51-AS1 Gene

mRNA expression in normal human tissues for TMEM51-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TMEM51-AS1 Gene

This gene is overexpressed in Spleen (x6.5), Brain - Cerebellum (x4.3), and Brain - Cerebellar Hemisphere (x4.2).

SOURCE GeneReport for Unigene cluster for TMEM51-AS1 Gene:

Hs.531424
genes like me logo Genes that share expression patterns with TMEM51-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TMEM51-AS1 Gene

Orthologs for TMEM51-AS1 Gene

Evolution for TMEM51-AS1 Gene

ENSEMBL:
Gene Tree for TMEM51-AS1 (if available)
TreeFam:
Gene Tree for TMEM51-AS1 (if available)

No data available for Orthologs for TMEM51-AS1 Gene

Paralogs for TMEM51-AS1 Gene

No data available for Paralogs for TMEM51-AS1 Gene

Variants for TMEM51-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM51-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1005446 -- 15,124,126(-) TTAGA(A/G)GGGGA intron-variant
rs1005447 -- 15,124,055(-) GGGCC(C/T)GAATC intron-variant
rs1005448 -- 15,123,611(-) ACCGA(A/G)CCAGA intron-variant
rs1008845 -- 15,119,477(-) ttgct(C/T)gagcc intron-variant
rs1055412 -- 15,114,779(-) AAACC(A/G)CAGAG nc-transcript-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for TMEM51-AS1 Gene

Variant ID Type Subtype PubMed ID
esv22618 CNV loss 19812545
nsv508913 CNV insertion 20534489
nsv545591 CNV loss 21841781
nsv833425 CNV gain 17160897

Relevant External Links for TMEM51-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM51-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMEM51-AS1 Gene

Disorders for TMEM51-AS1 Gene

Relevant External Links for TMEM51-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMEM51-AS1

No disorders were found for TMEM51-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM51-AS1 Gene

Publications for TMEM51-AS1 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TMEM51-AS1 Gene

Sources for TMEM51-AS1 Gene

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