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Aliases for TMEM51-AS1 Gene

Subcategory (RNA class) for TMEM51-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TMEM51-AS1 Gene

  • TMEM51 Antisense RNA 1 2 3 5
  • Chromosome 1 Open Reading Frame 126 2
  • C1orf126 3

External Ids for TMEM51-AS1 Gene

Previous HGNC Symbols for TMEM51-AS1 Gene

  • C1orf126

Previous GeneCards Identifiers for TMEM51-AS1 Gene

  • GC01M015439

Summaries for TMEM51-AS1 Gene

GeneCards Summary for TMEM51-AS1 Gene

TMEM51-AS1 (TMEM51 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TMEM51-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM51-AS1 Gene

Genomics for TMEM51-AS1 Gene

GeneHancer (GH) Regulatory Elements for TMEM51-AS1 Gene

Promoters and enhancers for TMEM51-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I015150 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 19 -2.9 -2938 9.3 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF207 ZNF143 FOS TMEM51 TMEM51-AS1 ENSG00000237938 SPEN C1orf195
GH01I015258 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 23.3 -108.2 -108214 3.8 PKNOX1 SMAD1 FOXA2 MLX ARNT ARID4B FOS JUNB REST MEF2D TMEM51-AS1 FHAD1 LOC101927417 PLEKHM2 SPEN ENSG00000237301 TMEM51 EFHD2 CASP9 PIR39012
GH01I016142 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.2 -999.2 -999197 17.5 CLOCK MLX FEZF1 DMAP1 YY1 E2F8 ZNF143 SP3 NFYC MEF2D EPHA2 SPEN CROCC ENSG00000237938 ZBTB17 TMEM51-AS1 FBXO42 RPL22P3 ARHGEF19 FBLIM1
GH01I015196 Enhancer 1.4 Ensembl ENCODE dbSUPER 21.8 -47.9 -47864 8.1 PKNOX1 FOXA2 NEUROD1 FEZF1 ZNF2 YY1 ZNF121 ZNF213 FOS RXRA GC01M015197 TMEM51-AS1 TMEM51 ENSG00000237301 LOC100421184
GH01I015629 Enhancer 0.9 ENCODE dbSUPER 22.3 -477.9 -477853 1.1 ZNF571 NFIB ZNF195 ZNF662 SALL2 ZNF491 MITF NFIC ZNF776 LCORL TMEM51-AS1 SLC25A34 NBPF1 SPEN CROCCP3 RSC1A1 PLEKHM2 RNU7-179P ENSG00000237938 SCARNA21B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TMEM51-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TMEM51-AS1 Gene

Genomic Locations for TMEM51-AS1 Gene
chr1:15,111,815-15,152,464
(GRCh38/hg38)
Size:
40,650 bases
Orientation:
Minus strand
chr1:15,438,311-15,478,960
(GRCh37/hg19)

Genomic View for TMEM51-AS1 Gene

Genes around TMEM51-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM51-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM51-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM51-AS1 Gene

Proteins for TMEM51-AS1 Gene

Post-translational modifications for TMEM51-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM51-AS1 Gene

Domains & Families for TMEM51-AS1 Gene

Suggested Antigen Peptide Sequences for TMEM51-AS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for TMEM51-AS1 Gene

Function for TMEM51-AS1 Gene

Phenotypes for TMEM51-AS1 Gene

genes like me logo Genes that share phenotypes with TMEM51-AS1: view

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM51-AS1 Gene

Localization for TMEM51-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMEM51-AS1 Gene

Pathways & Interactions for TMEM51-AS1 Gene

SuperPathways for TMEM51-AS1 Gene

No Data Available

Interacting Proteins for TMEM51-AS1 Gene

Gene Ontology (GO) - Biological Process for TMEM51-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM51-AS1 Gene

Drugs & Compounds for TMEM51-AS1 Gene

No Compound Related Data Available

Transcripts for TMEM51-AS1 Gene

mRNA/cDNA for TMEM51-AS1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(22) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMEM51-AS1 Gene

TMEM51 antisense RNA 1:
Representative Sequences:

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM51-AS1 Gene

No ASD Table

Relevant External Links for TMEM51-AS1 Gene

GeneLoc Exon Structure for
TMEM51-AS1
ECgene alternative splicing isoforms for
TMEM51-AS1

Expression for TMEM51-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMEM51-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TMEM51-AS1 Gene

This gene is overexpressed in Spleen (x6.5), Brain - Cerebellum (x4.3), and Brain - Cerebellar Hemisphere (x4.2).

SOURCE GeneReport for Unigene cluster for TMEM51-AS1 Gene:

Hs.531424
genes like me logo Genes that share expression patterns with TMEM51-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMEM51-AS1 Gene

Orthologs for TMEM51-AS1 Gene

Evolution for TMEM51-AS1 Gene

ENSEMBL:
Gene Tree for TMEM51-AS1 (if available)
TreeFam:
Gene Tree for TMEM51-AS1 (if available)

No data available for Orthologs for TMEM51-AS1 Gene

Paralogs for TMEM51-AS1 Gene

No data available for Paralogs for TMEM51-AS1 Gene

Variants for TMEM51-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM51-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000014348 -- 15,134,755(-) G/A intron_variant
rs1000015178 -- 15,131,365(-) T/C intron_variant
rs1000123349 -- 15,129,562(-) G/C intron_variant
rs1000168199 -- 15,126,498(-) C/T intron_variant
rs1000183493 -- 15,149,763(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM51-AS1 Gene

Variant ID Type Subtype PubMed ID
esv22618 CNV loss 19812545
nsv508913 CNV insertion 20534489
nsv545591 CNV loss 21841781
nsv833425 CNV gain 17160897

Additional Variant Information for TMEM51-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM51-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMEM51-AS1 Gene

Disorders for TMEM51-AS1 Gene

Additional Disease Information for TMEM51-AS1

No disorders were found for TMEM51-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM51-AS1 Gene

Publications for TMEM51-AS1 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for TMEM51-AS1 Gene

Sources for TMEM51-AS1 Gene

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