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Aliases for TMEM51-AS1 Gene

Subcategory (RNA class) for TMEM51-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TMEM51-AS1 Gene

  • TMEM51 Antisense RNA 1 2 3 5
  • Chromosome 1 Open Reading Frame 126 2
  • C1orf126 3

External Ids for TMEM51-AS1 Gene

Previous HGNC Symbols for TMEM51-AS1 Gene

  • C1orf126

Previous GeneCards Identifiers for TMEM51-AS1 Gene

  • GC01M015439

Summaries for TMEM51-AS1 Gene

GeneCards Summary for TMEM51-AS1 Gene

TMEM51-AS1 (TMEM51 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM51-AS1 Gene

Genomics for TMEM51-AS1 Gene

Regulatory Elements for TMEM51-AS1 Gene

Enhancers for TMEM51-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G015150 1.6 Ensembl ENCODE dbSUPER 18.9 -2.9 -2939 9.3 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF143 ZNF207 FOS TMEM51 TMEM51-AS1 ENSG00000237938 SPEN C1orf195
GH01G015184 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.5 -36.4 -36351 9.2 PKNOX1 ARID4B ZNF48 ZNF121 ZNF766 GATA2 FOS JUNB MIER2 PPARG TMEM51-AS1 TMEM51 LOC100420251 C1orf195
GH01G015196 1.7 Ensembl ENCODE dbSUPER 10.7 -47.9 -47865 8.1 CREB3L1 MLX DMAP1 FEZF1 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 SPEN ENSG00000237938 TMEM51-AS1 TMEM51 ZBTB17 GC01M015197 LOC100421184
GH01G015175 1.5 Ensembl ENCODE dbSUPER 11.2 -26.2 -26187 6.3 FOXA2 PKNOX1 ATF1 SIN3A TCF12 GATA2 FOS SP5 REST ZNF623 TMEM51 TMEM51-AS1 C1orf195 LOC100420251
GH01G015171 1.5 Ensembl ENCODE dbSUPER 11.1 -20.9 -20911 3.7 PKNOX1 MLX ZFP64 ARID4B ZNF2 ZNF121 ZNF143 FOS SP5 MXD4 TMEM51 TMEM51-AS1 C1orf195 LOC100420251
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TMEM51-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TMEM51-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000001830 -1236 2601 FOXA2 MLX ARID4B SIN3A ZNF2 ZNF143 ZNF207 ZNF263 SP3 SP5

Genomic Location for TMEM51-AS1 Gene

Chromosome:
1
Start:
15,111,815 bp from pter
End:
15,152,464 bp from pter
Size:
40,650 bases
Orientation:
Minus strand

Genomic View for TMEM51-AS1 Gene

Genes around TMEM51-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM51-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM51-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM51-AS1 Gene

Proteins for TMEM51-AS1 Gene

Post-translational modifications for TMEM51-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM51-AS1 Gene

Domains & Families for TMEM51-AS1 Gene

Suggested Antigen Peptide Sequences for TMEM51-AS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for TMEM51-AS1 Gene

Function for TMEM51-AS1 Gene

Phenotypes for TMEM51-AS1 Gene

genes like me logo Genes that share phenotypes with TMEM51-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM51-AS1 Gene

Localization for TMEM51-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TMEM51-AS1 Gene

Pathways & Interactions for TMEM51-AS1 Gene

SuperPathways for TMEM51-AS1 Gene

No Data Available

Interacting Proteins for TMEM51-AS1 Gene

Gene Ontology (GO) - Biological Process for TMEM51-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM51-AS1 Gene

Drugs & Compounds for TMEM51-AS1 Gene

No Compound Related Data Available

Transcripts for TMEM51-AS1 Gene

mRNA/cDNA for TMEM51-AS1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(22) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMEM51-AS1 Gene

TMEM51 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM51-AS1 Gene

No ASD Table

Relevant External Links for TMEM51-AS1 Gene

GeneLoc Exon Structure for
TMEM51-AS1
ECgene alternative splicing isoforms for
TMEM51-AS1

Expression for TMEM51-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMEM51-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TMEM51-AS1 Gene

This gene is overexpressed in Spleen (x6.5), Brain - Cerebellum (x4.3), and Brain - Cerebellar Hemisphere (x4.2).

SOURCE GeneReport for Unigene cluster for TMEM51-AS1 Gene:

Hs.531424
genes like me logo Genes that share expression patterns with TMEM51-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMEM51-AS1 Gene

Orthologs for TMEM51-AS1 Gene

Evolution for TMEM51-AS1 Gene

ENSEMBL:
Gene Tree for TMEM51-AS1 (if available)
TreeFam:
Gene Tree for TMEM51-AS1 (if available)

No data available for Orthologs for TMEM51-AS1 Gene

Paralogs for TMEM51-AS1 Gene

No data available for Paralogs for TMEM51-AS1 Gene

Variants for TMEM51-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM51-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000014348 -- 15,134,755(+) AGCTA(A/G)GATTA intron-variant
rs1000015178 -- 15,131,365(+) AATAG(C/T)AATAG intron-variant
rs1000123349 -- 15,129,562(+) GATGA(C/G)TGCTG intron-variant
rs1000168199 -- 15,126,498(+) AACTC(C/T)GGTTC intron-variant
rs1000183493 -- 15,149,763(+) TTCTC(A/G)GTGAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM51-AS1 Gene

Variant ID Type Subtype PubMed ID
esv22618 CNV loss 19812545
nsv508913 CNV insertion 20534489
nsv545591 CNV loss 21841781
nsv833425 CNV gain 17160897

Relevant External Links for TMEM51-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM51-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMEM51-AS1 Gene

Disorders for TMEM51-AS1 Gene

Relevant External Links for TMEM51-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMEM51-AS1

No disorders were found for TMEM51-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM51-AS1 Gene

Publications for TMEM51-AS1 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TMEM51-AS1 Gene

Sources for TMEM51-AS1 Gene

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