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Aliases for TMEM5-AS1 Gene

Subcategory (RNA class) for TMEM5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TMEM5-AS1 Gene

  • TMEM5 Antisense RNA 1 2 3 5

External Ids for TMEM5-AS1 Gene

Previous GeneCards Identifiers for TMEM5-AS1 Gene

  • GC12M064203
  • GC00U935938

Summaries for TMEM5-AS1 Gene

GeneCards Summary for TMEM5-AS1 Gene

TMEM5-AS1 (TMEM5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM5-AS1 Gene

Genomics for TMEM5-AS1 Gene

Regulatory Elements for TMEM5-AS1 Gene

Enhancers for TMEM5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F063821 0.4 ENCODE 0.8 -0.4 -368 1.9 ZNF202 CTCF HLF MAFG TEAD3 ZNF316 POLR2A NFE2 MAFK EMSY TBK1 RPS11P6 LOC100420899 XPOT RNU6-1009P PABPC1P4 TMEM5-AS1 GC12M063829
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TMEM5-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TMEM5-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000431906 255 1000 ZNF202 POLR2A HLF

Genomic Location for TMEM5-AS1 Gene

Chromosome:
12
Start:
63,808,845 bp from pter
End:
63,822,156 bp from pter
Size:
13,312 bases
Orientation:
Minus strand

Genomic View for TMEM5-AS1 Gene

Genes around TMEM5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM5-AS1 Gene

Proteins for TMEM5-AS1 Gene

Post-translational modifications for TMEM5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM5-AS1 Gene

Domains & Families for TMEM5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMEM5-AS1 Gene

Function for TMEM5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM5-AS1 Gene

Localization for TMEM5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TMEM5-AS1 Gene

Pathways & Interactions for TMEM5-AS1 Gene

SuperPathways for TMEM5-AS1 Gene

No Data Available

Interacting Proteins for TMEM5-AS1 Gene

Gene Ontology (GO) - Biological Process for TMEM5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM5-AS1 Gene

Transcripts for TMEM5-AS1 Gene

mRNA/cDNA for TMEM5-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM5-AS1 Gene

No ASD Table

Relevant External Links for TMEM5-AS1 Gene

GeneLoc Exon Structure for
TMEM5-AS1
ECgene alternative splicing isoforms for
TMEM5-AS1

Expression for TMEM5-AS1 Gene

mRNA expression in normal human tissues for TMEM5-AS1 Gene

genes like me logo Genes that share expression patterns with TMEM5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TMEM5-AS1 Gene

Orthologs for TMEM5-AS1 Gene

Evolution for TMEM5-AS1 Gene

ENSEMBL:
Gene Tree for TMEM5-AS1 (if available)
TreeFam:
Gene Tree for TMEM5-AS1 (if available)

No data available for Orthologs for TMEM5-AS1 Gene

Paralogs for TMEM5-AS1 Gene

No data available for Paralogs for TMEM5-AS1 Gene

Variants for TMEM5-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM5-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs150736997 Pathogenic 63,808,776(+) ATGCT(A/G)TCGAA nc-transcript-variant, downstream-variant-500B, reference, missense
rs397514695 Pathogenic 63,808,778(+) GCTAT(A/C/T)GAATC nc-transcript-variant, downstream-variant-500B, reference, synonymous-codon, stop-gained
rs138552613 Benign 63,809,111(+) CTAAC(-/AT)GTGAT intron-variant, nc-transcript-variant, utr-variant-3-prime
rs141536395 Benign 63,808,986(+) AATTG(A/G)AAGAA intron-variant, nc-transcript-variant, reference, missense
rs1876465 Benign 63,809,110(+) GCTAA(C/G)ATGTG intron-variant, nc-transcript-variant, utr-variant-3-prime

Relevant External Links for TMEM5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TMEM5-AS1 Gene

Disorders for TMEM5-AS1 Gene

Relevant External Links for TMEM5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMEM5-AS1

No disorders were found for TMEM5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM5-AS1 Gene

Publications for TMEM5-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for TMEM5-AS1 Gene

Sources for TMEM5-AS1 Gene

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