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Aliases for TMEM45A Gene

Aliases for TMEM45A Gene

  • Transmembrane Protein 45A 2 3 5
  • DNA Polymerase-Transactivated Protein 4 3 4
  • DNAPTP4 3 4
  • DERP7 3 4
  • Dermal Papilla Derived Protein 7 3
  • Dermal Papilla-Derived Protein 7 4

External Ids for TMEM45A Gene

Previous GeneCards Identifiers for TMEM45A Gene

  • GC03P101695
  • GC03P100211
  • GC03P097579

Summaries for TMEM45A Gene

GeneCards Summary for TMEM45A Gene

TMEM45A (Transmembrane Protein 45A) is a Protein Coding gene. An important paralog of this gene is TMEM45B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM45A Gene

Genomics for TMEM45A Gene

Regulatory Elements for TMEM45A Gene

Enhancers for TMEM45A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F100491 0.2 ENCODE 18.8 -0.1 -57 2.0 PKNOX1 ATF1 CREB3L1 WRNIP1 ARID4B FEZF1 DMAP1 ZNF48 YY1 SLC30A9 TMEM45A GC03P100474
GH03F100525 1.3 FANTOM5 Ensembl ENCODE 18.5 +33.4 33398 2.0 SCRT1 PKNOX1 DPF2 FEZF1 ZIC2 OSR2 JUND POLR2A SCRT2 GLIS1 TMEM45A GC03P100533
GH03F100496 0.9 Ensembl ENCODE 16.9 +4.3 4268 1.2 PKNOX1 MTA2 JUN TBX21 JUND CBX5 POLR3A IKZF1 TCF7L2 SPI1 TMEM45A GC03P100533
GH03F100560 1 Ensembl ENCODE 12.1 +69.5 69454 2.2 GATA3 SMARCA4 ATF3 FOS TCF7L2 YY1 TMEM45A GC03P100561 GC03P100580
GH03F100556 0.7 Ensembl ENCODE 11.3 +64.3 64341 1.0 JUND CEBPB RCOR1 EP300 TMEM45A LNP1 TOMM70 GC03P100561 GC03P100533
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TMEM45A on UCSC Golden Path with GeneCards custom track

Promoters for TMEM45A Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001369409 281 2200 PKNOX1 ATF1 CREB3L1 WRNIP1 ARID4B FEZF1 DMAP1 ZNF48 YY1 SLC30A9

Genomic Location for TMEM45A Gene

Chromosome:
3
Start:
100,492,619 bp from pter
End:
100,577,453 bp from pter
Size:
84,835 bases
Orientation:
Plus strand

Genomic View for TMEM45A Gene

Genes around TMEM45A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM45A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM45A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM45A Gene

Proteins for TMEM45A Gene

  • Protein details for TMEM45A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NWC5-TM45A_HUMAN
    Recommended name:
    Transmembrane protein 45A
    Protein Accession:
    Q9NWC5
    Secondary Accessions:
    • Q53YW5

    Protein attributes for TMEM45A Gene

    Size:
    275 amino acids
    Molecular mass:
    31680 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TMEM45A Gene

Post-translational modifications for TMEM45A Gene

  • Ubiquitination at Lys 43 and Lys 263
  • Modification sites at PhosphoSitePlus

Other Protein References for TMEM45A Gene

No data available for DME Specific Peptides for TMEM45A Gene

Domains & Families for TMEM45A Gene

Protein Domains for TMEM45A Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TMEM45A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9NWC5

UniProtKB/Swiss-Prot:

TM45A_HUMAN :
  • Belongs to the TMEM45 family.
Family:
  • Belongs to the TMEM45 family.
genes like me logo Genes that share domains with TMEM45A: view

No data available for Gene Families for TMEM45A Gene

Function for TMEM45A Gene

genes like me logo Genes that share phenotypes with TMEM45A: view

Animal Model Products

miRNA for TMEM45A Gene

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TMEM45A Gene

Localization for TMEM45A Gene

Subcellular locations from UniProtKB/Swiss-Prot for TMEM45A Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TMEM45A Gene COMPARTMENTS Subcellular localization image for TMEM45A gene
Compartment Confidence
plasma membrane 3
cytoskeleton 2
golgi apparatus 1
lysosome 1

Gene Ontology (GO) - Cellular Components for TMEM45A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TMEM45A: view

Pathways & Interactions for TMEM45A Gene

SuperPathways for TMEM45A Gene

No Data Available

Interacting Proteins for TMEM45A Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000319009%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000319009 Q9NWC5-TM45A_HUMAN for TMEM45A Gene via STRING IID

Gene Ontology (GO) - Biological Process for TMEM45A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM45A Gene

Transcripts for TMEM45A Gene

Unigene Clusters for TMEM45A Gene

Transmembrane protein 45A:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM45A Gene

No ASD Table

Relevant External Links for TMEM45A Gene

GeneLoc Exon Structure for
TMEM45A
ECgene alternative splicing isoforms for
TMEM45A

Expression for TMEM45A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TMEM45A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TMEM45A Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x15.1) and Skin - Not Sun Exposed (Suprapubic) (x12.9).

NURSA nuclear receptor signaling pathways regulating expression of TMEM45A Gene:

TMEM45A

SOURCE GeneReport for Unigene cluster for TMEM45A Gene:

Hs.658956
genes like me logo Genes that share expression patterns with TMEM45A: view

Primer Products

No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TMEM45A Gene

Orthologs for TMEM45A Gene

This gene was present in the common ancestor of chordates.

Orthologs for TMEM45A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TMEM45A 34 35
  • 99.76 (n)
dog
(Canis familiaris)
Mammalia TMEM45A 34 35
  • 83.14 (n)
cow
(Bos Taurus)
Mammalia TMEM45A 34
  • 81.01 (n)
-- 35
  • 74 (a)
OneToMany
-- 35
  • 66 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia LOC100911041 34
  • 74.05 (n)
mouse
(Mus musculus)
Mammalia Tmem45a 34 16 35
  • 73.51 (n)
2310005G13Rik 35
  • 47 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia TMEM45A 35
  • 64 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TMEM45A 35
  • 63 (a)
OneToOne
chicken
(Gallus gallus)
Aves TMEM45A 35
  • 54 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TMEM45A 35
  • 53 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii TMEM45A 35
  • 46 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.8817 35
  • 30 (a)
OneToMany
Species where no ortholog for TMEM45A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TMEM45A Gene

ENSEMBL:
Gene Tree for TMEM45A (if available)
TreeFam:
Gene Tree for TMEM45A (if available)

Paralogs for TMEM45A Gene

Paralogs for TMEM45A Gene

(1) SIMAP similar genes for TMEM45A Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with TMEM45A: view

Variants for TMEM45A Gene

Sequence variations from dbSNP and Humsavar for TMEM45A Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10049153 -- 100,575,423(+) gctgg(A/G)gtgca intron-variant
rs10222528 -- 100,567,240(+) gttat(C/T)tcagc intron-variant
rs10589207 -- 100,523,816(+) TCCTC(-/CTT)CTTCT intron-variant
rs10682230 -- 100,492,756(+) AAATT(-/C/CC)CCTCC utr-variant-5-prime
rs10936217 -- 100,511,371(+) ccaaa(C/T)taagc intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM45A Gene

Variant ID Type Subtype PubMed ID
nsv1115642 CNV duplication 24896259
nsv1150548 CNV duplication 26484159

Variation tolerance for TMEM45A Gene

Residual Variation Intolerance Score: 33.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.43; 9.32% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TMEM45A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM45A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TMEM45A Gene

Disorders for TMEM45A Gene

Relevant External Links for TMEM45A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMEM45A

No disorders were found for TMEM45A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM45A Gene

Publications for TMEM45A Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  4. Inhibition of TMEM45A suppresses proliferation, induces cell cycle arrest and reduces cell invasion in human ovarian cancer cells. (PMID: 25872785) Guo J. … Cheng Z. (Oncol. Rep. 2015) 3 64
  5. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 64

Products for TMEM45A Gene

Sources for TMEM45A Gene

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