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Aliases for TMEM44-AS1 Gene

Subcategory (RNA class) for TMEM44-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TMEM44-AS1 Gene

  • TMEM44 Antisense RNA 1 2 3 5
  • TMEM44 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TMEM44-AS1 Gene

Previous GeneCards Identifiers for TMEM44-AS1 Gene

  • GC03P194306

Summaries for TMEM44-AS1 Gene

GeneCards Summary for TMEM44-AS1 Gene

TMEM44-AS1 (TMEM44 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TMEM44-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM44-AS1 Gene

Genomics for TMEM44-AS1 Gene

Regulatory Elements for TMEM44-AS1 Gene

Enhancers for TMEM44-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H194561 1.8 FANTOM5 Ensembl ENCODE dbSUPER 23 -22.3 -22263 1.4 PKNOX1 ATF1 ARNT BRCA1 TCF12 GATA2 ELK1 ATF7 FOS MEF2D TMEM44-AS1 ATP13A3 RNU6-1101P ENSG00000244675 LINC00884 GP5 HES1 RPL23AP93
GH03H194556 1.2 Ensembl dbSUPER 22.2 -27.4 -27411 0.8 HDGF ARNT NFRKB ZBTB40 TCF12 EGR1 RUNX3 EGR2 THAP11 ZBTB2 TMEM44-AS1 RNU6-1101P ATP13A3 ENSG00000244675 LINC00884 GP5 CPN2 RPL23AP93
GH03H194571 2 FANTOM5 Ensembl ENCODE dbSUPER 12.6 -10.2 -10180 5.3 PKNOX1 MLX ARNT ARID4B FEZF1 ZNF2 SLC30A9 ZNF766 ZNF143 FOS ATP13A3 TMEM44-AS1 LSG1 ENSG00000244675 LINC00884 RNU6-1101P GP5 RNU6ATAC24P CPN2 ACAP2
GH03H194583 1.3 ENCODE dbSUPER 19.1 +0.4 367 2.3 HDGF ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZHX2 MXD4 LSG1 RNU6ATAC24P TMEM44-AS1 OPA1-AS1 LOC105374291
GH03H194520 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.3 -62.2 -62174 3.2 TBP FOXA2 PKNOX1 ATF1 ARID4B BATF BRCA1 RAD21 YY1 EGR1 ATP13A3 ENSG00000244675 LINC00884 TMEM44-AS1 RNU6-1101P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TMEM44-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TMEM44-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000164132 89 1401 HDGF FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZHX2

Genomic Locations for TMEM44-AS1 Gene

Genomic Locations for TMEM44-AS1 Gene
chr3:194,584,011-194,590,832
(GRCh38/hg38)
Size:
6,822 bases
Orientation:
Plus strand
chr3:194,304,740-194,311,268
(GRCh37/hg19)

Genomic View for TMEM44-AS1 Gene

Genes around TMEM44-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM44-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM44-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM44-AS1 Gene

Proteins for TMEM44-AS1 Gene

Post-translational modifications for TMEM44-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM44-AS1 Gene

Domains & Families for TMEM44-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMEM44-AS1 Gene

Function for TMEM44-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM44-AS1 Gene

Localization for TMEM44-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMEM44-AS1 Gene

Pathways & Interactions for TMEM44-AS1 Gene

SuperPathways for TMEM44-AS1 Gene

No Data Available

Interacting Proteins for TMEM44-AS1 Gene

Gene Ontology (GO) - Biological Process for TMEM44-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM44-AS1 Gene

Drugs & Compounds for TMEM44-AS1 Gene

No Compound Related Data Available

Transcripts for TMEM44-AS1 Gene

mRNA/cDNA for TMEM44-AS1 Gene

(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMEM44-AS1 Gene

TMEM44 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM44-AS1 Gene

No ASD Table

Relevant External Links for TMEM44-AS1 Gene

GeneLoc Exon Structure for
TMEM44-AS1
ECgene alternative splicing isoforms for
TMEM44-AS1

Expression for TMEM44-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMEM44-AS1 Gene

SOURCE GeneReport for Unigene cluster for TMEM44-AS1 Gene:

Hs.586059
genes like me logo Genes that share expression patterns with TMEM44-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMEM44-AS1 Gene

Orthologs for TMEM44-AS1 Gene

Evolution for TMEM44-AS1 Gene

ENSEMBL:
Gene Tree for TMEM44-AS1 (if available)
TreeFam:
Gene Tree for TMEM44-AS1 (if available)

No data available for Orthologs for TMEM44-AS1 Gene

Paralogs for TMEM44-AS1 Gene

No data available for Paralogs for TMEM44-AS1 Gene

Variants for TMEM44-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM44-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000385070 -- 194,583,216(+) GCCCG(C/T)CTCAC upstream-variant-2KB
rs1000742236 -- 194,585,542(+) GAAAC(C/T)CCATC intron-variant
rs1000813178 -- 194,584,372(+) AGGCT(C/T)TTGAA nc-transcript-variant
rs1001172123 -- 194,583,426(+) AAAGA(A/G)AAGAA upstream-variant-2KB
rs1001173978 -- 194,588,978(+) ATTCC(C/T)GGAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM44-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3599207 CNV loss 21293372

Relevant External Links for TMEM44-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM44-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMEM44-AS1 Gene

Disorders for TMEM44-AS1 Gene

Relevant External Links for TMEM44-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMEM44-AS1

No disorders were found for TMEM44-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM44-AS1 Gene

Publications for TMEM44-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60
  3. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 60
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 60

Products for TMEM44-AS1 Gene

Sources for TMEM44-AS1 Gene

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