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Aliases for TMEM44-AS1 Gene

Subcategory (RNA class) for TMEM44-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TMEM44-AS1 Gene

  • TMEM44 Antisense RNA 1 2 3 5
  • TMEM44 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TMEM44-AS1 Gene

Previous GeneCards Identifiers for TMEM44-AS1 Gene

  • GC03P194306

Summaries for TMEM44-AS1 Gene

GeneCards Summary for TMEM44-AS1 Gene

TMEM44-AS1 (TMEM44 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM44-AS1 Gene

Genomics for TMEM44-AS1 Gene

Regulatory Elements for TMEM44-AS1 Gene

Enhancers for TMEM44-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F194561 1.6 FANTOM5 Ensembl ENCODE 23 -22.3 -22280 1.5 PKNOX1 ATF1 CREB3L1 SIN3A BRCA1 ELK1 GATA2 FOS MEF2D SMARCA4 TMEM44-AS1 ATP13A3 RNU6-1101P ENSG00000244675 LINC00884 GP5 HES1 RPL23AP93
GH03F194570 1.8 FANTOM5 Ensembl ENCODE 12.6 -10.7 -10658 6.5 PKNOX1 ARNT CREB3L1 MLX ARID4B FEZF1 ZNF2 YY1 SLC30A9 FOS ATP13A3 LSG1 TMEM44-AS1 ENSG00000244675 LINC00884 RNU6-1101P GP5 ENSG00000229334 CPN2 ACAP2-IT1
GH03F194583 1.1 ENCODE 19.1 +0.4 367 2.3 HDGF CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 MXD4 LSG1 RNU6ATAC24P TMEM44-AS1 OPA1-AS1 LOC105374291
GH03F194555 0.9 Ensembl 22.2 -27.6 -27610 1.2 HDGF ARNT NFRKB KLF17 ZNF48 YY1 EGR2 THAP11 ZBTB2 CEBPB TMEM44-AS1 RNU6-1101P ENSG00000244675 ATP13A3 LINC00884 GP5 CPN2 RPL23AP93
GH03F194520 1.5 FANTOM5 Ensembl ENCODE 11.3 -62.2 -62174 3.2 HDGF TBP PKNOX1 ARID4B ZNF48 BRCA1 RAD21 YY1 CREM EGR2 ATP13A3 ENSG00000244675 LINC00884 TMEM44-AS1 LOC105374290
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TMEM44-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TMEM44-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001487638 -10 1600 HDGF CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 MXD4

Genomic Location for TMEM44-AS1 Gene

Chromosome:
3
Start:
194,584,011 bp from pter
End:
194,590,832 bp from pter
Size:
6,822 bases
Orientation:
Plus strand

Genomic View for TMEM44-AS1 Gene

Genes around TMEM44-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM44-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM44-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM44-AS1 Gene

Proteins for TMEM44-AS1 Gene

Post-translational modifications for TMEM44-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM44-AS1 Gene

Domains & Families for TMEM44-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMEM44-AS1 Gene

Function for TMEM44-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM44-AS1 Gene

Localization for TMEM44-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TMEM44-AS1 Gene

Pathways & Interactions for TMEM44-AS1 Gene

SuperPathways for TMEM44-AS1 Gene

No Data Available

Interacting Proteins for TMEM44-AS1 Gene

Gene Ontology (GO) - Biological Process for TMEM44-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM44-AS1 Gene

Transcripts for TMEM44-AS1 Gene

mRNA/cDNA for TMEM44-AS1 Gene

(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMEM44-AS1 Gene

TMEM44 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM44-AS1 Gene

No ASD Table

Relevant External Links for TMEM44-AS1 Gene

GeneLoc Exon Structure for
TMEM44-AS1
ECgene alternative splicing isoforms for
TMEM44-AS1

Expression for TMEM44-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TMEM44-AS1 Gene

SOURCE GeneReport for Unigene cluster for TMEM44-AS1 Gene:

Hs.586059
genes like me logo Genes that share expression patterns with TMEM44-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TMEM44-AS1 Gene

Orthologs for TMEM44-AS1 Gene

Evolution for TMEM44-AS1 Gene

ENSEMBL:
Gene Tree for TMEM44-AS1 (if available)
TreeFam:
Gene Tree for TMEM44-AS1 (if available)

No data available for Orthologs for TMEM44-AS1 Gene

Paralogs for TMEM44-AS1 Gene

No data available for Paralogs for TMEM44-AS1 Gene

Variants for TMEM44-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM44-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1055161 -- 194,590,002(+) AAAGG(A/C)TGTGT intron-variant, nc-transcript-variant
rs10672197 -- 194,585,582(+) TCATC(-/ATC)TTAGC intron-variant
rs111306113 -- 194,590,301(+) AAGCC(A/G)TCATG intron-variant, nc-transcript-variant
rs111542921 -- 194,586,945(+) GTACC(C/T)ATGAC intron-variant
rs113095496 -- 194,588,189(+) GAACC(C/T)AGCAG intron-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for TMEM44-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3599207 CNV loss 21293372

Relevant External Links for TMEM44-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM44-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMEM44-AS1 Gene

Disorders for TMEM44-AS1 Gene

Relevant External Links for TMEM44-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMEM44-AS1

No disorders were found for TMEM44-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM44-AS1 Gene

Publications for TMEM44-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  3. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E. … Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 64
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for TMEM44-AS1 Gene

Sources for TMEM44-AS1 Gene

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