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Aliases for TMEM44-AS1 Gene

Subcategory (RNA class) for TMEM44-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TMEM44-AS1 Gene

  • TMEM44 Antisense RNA 1 2 3 5
  • TMEM44 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TMEM44-AS1 Gene

Previous GeneCards Identifiers for TMEM44-AS1 Gene

  • GC03P194306

Summaries for TMEM44-AS1 Gene

GeneCards Summary for TMEM44-AS1 Gene

TMEM44-AS1 (TMEM44 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM44-AS1 Gene

Genomics for TMEM44-AS1 Gene

Regulatory Elements for TMEM44-AS1 Gene

Enhancers for TMEM44-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G194561 1.9 FANTOM5 Ensembl ENCODE dbSUPER 23 -22.3 -22263 1.4 PKNOX1 ATF1 CREB3L1 ARNT SIN3A BRCA1 TCF12 ELK1 GATA2 FOS TMEM44-AS1 ATP13A3 RNU6-1101P ENSG00000244675 LINC00884 GP5 HES1 RPL23AP93
GH03G194583 1.4 ENCODE dbSUPER 19.1 +0.4 367 2.3 HDGF CREB3L1 ARNT AGO1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 TMEM44-AS1 LSG1 OPA1-AS1 RNU6ATAC24P LOC105374291
GH03G194556 1.2 Ensembl dbSUPER 22.2 -27.4 -27411 0.8 HDGF ARNT ZNF48 YY1 TCF12 ZNF592 KAT8 CREB3 SMARCA4 GLIS1 TMEM44-AS1 RNU6-1101P ENSG00000244675 ATP13A3 LINC00884 GP5 CPN2 RPL23AP93
GH03G194571 2 FANTOM5 Ensembl ENCODE dbSUPER 12.7 -10.2 -10180 5.3 PKNOX1 MLX CREB3L1 ARNT ARID4B FEZF1 ZNF2 YY1 SLC30A9 ZNF766 ATP13A3 LSG1 TMEM44-AS1 ENSG00000244675 LINC00884 RNU6-1101P GP5 ENSG00000229334 CPN2 ACAP2-IT1
GH03G194585 1.3 Ensembl ENCODE dbSUPER 15.4 +3.5 3477 3.5 FEZF1 FOSL1 ARID3A GATA3 GATA2 POLR2A EED ETV6 PRDM10 ZNF600 TMEM44-AS1 ATP13A3 LOC105374291
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TMEM44-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TMEM44-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000164132 89 1401 HDGF FOXA2 CREB3L1 ARNT AGO1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2

Genomic Location for TMEM44-AS1 Gene

Chromosome:
3
Start:
194,584,011 bp from pter
End:
194,590,832 bp from pter
Size:
6,822 bases
Orientation:
Plus strand

Genomic View for TMEM44-AS1 Gene

Genes around TMEM44-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM44-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM44-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM44-AS1 Gene

Proteins for TMEM44-AS1 Gene

Post-translational modifications for TMEM44-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM44-AS1 Gene

Domains & Families for TMEM44-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMEM44-AS1 Gene

Function for TMEM44-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM44-AS1 Gene

Localization for TMEM44-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TMEM44-AS1 Gene

Pathways & Interactions for TMEM44-AS1 Gene

SuperPathways for TMEM44-AS1 Gene

No Data Available

Interacting Proteins for TMEM44-AS1 Gene

Gene Ontology (GO) - Biological Process for TMEM44-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM44-AS1 Gene

Transcripts for TMEM44-AS1 Gene

mRNA/cDNA for TMEM44-AS1 Gene

(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMEM44-AS1 Gene

TMEM44 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM44-AS1 Gene

No ASD Table

Relevant External Links for TMEM44-AS1 Gene

GeneLoc Exon Structure for
TMEM44-AS1
ECgene alternative splicing isoforms for
TMEM44-AS1

Expression for TMEM44-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMEM44-AS1 Gene

SOURCE GeneReport for Unigene cluster for TMEM44-AS1 Gene:

Hs.586059
genes like me logo Genes that share expression patterns with TMEM44-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMEM44-AS1 Gene

Orthologs for TMEM44-AS1 Gene

Evolution for TMEM44-AS1 Gene

ENSEMBL:
Gene Tree for TMEM44-AS1 (if available)
TreeFam:
Gene Tree for TMEM44-AS1 (if available)

No data available for Orthologs for TMEM44-AS1 Gene

Paralogs for TMEM44-AS1 Gene

No data available for Paralogs for TMEM44-AS1 Gene

Variants for TMEM44-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM44-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000385070 -- 194,583,216(+) GCCCG(C/T)CTCAC upstream-variant-2KB
rs1000742236 -- 194,585,542(+) GAAAC(C/T)CCATC intron-variant
rs1000813178 -- 194,584,372(+) AGGCT(C/T)TTGAA nc-transcript-variant
rs1001172123 -- 194,583,426(+) AAAGA(A/G)AAGAA upstream-variant-2KB
rs1001173978 -- 194,588,978(+) ATTCC(C/T)GGAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM44-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3599207 CNV loss 21293372

Relevant External Links for TMEM44-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM44-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMEM44-AS1 Gene

Disorders for TMEM44-AS1 Gene

Relevant External Links for TMEM44-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMEM44-AS1

No disorders were found for TMEM44-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM44-AS1 Gene

Publications for TMEM44-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  3. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E. … Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 64
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for TMEM44-AS1 Gene

Sources for TMEM44-AS1 Gene

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