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Aliases for TMEM44-AS1 Gene

Subcategory (RNA class) for TMEM44-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for TMEM44-AS1 Gene

  • TMEM44 Antisense RNA 1 2 3 5
  • TMEM44 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TMEM44-AS1 Gene

Previous GeneCards Identifiers for TMEM44-AS1 Gene

  • GC03P194306

Summaries for TMEM44-AS1 Gene

GeneCards Summary for TMEM44-AS1 Gene

TMEM44-AS1 (TMEM44 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TMEM44-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM44-AS1 Gene

Genomics for TMEM44-AS1 Gene

Regulatory Elements for TMEM44-AS1 Gene

Enhancers for TMEM44-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H194561 1.8 FANTOM5 Ensembl ENCODE dbSUPER 23 -22.3 -22263 1.4 PKNOX1 ATF1 ARNT BRCA1 TCF12 GATA2 ELK1 ATF7 FOS MEF2D TMEM44-AS1 ATP13A3 RNU6-1101P ENSG00000244675 LINC00884 GP5 HES1 RPL23AP93
GH03H194556 1.2 Ensembl dbSUPER 22.2 -27.4 -27411 0.8 HDGF ARNT NFRKB ZBTB40 TCF12 EGR1 RUNX3 EGR2 THAP11 ZBTB2 TMEM44-AS1 RNU6-1101P ATP13A3 ENSG00000244675 LINC00884 GP5 CPN2 RPL23AP93
GH03H194571 2 FANTOM5 Ensembl ENCODE dbSUPER 12.6 -10.2 -10180 5.3 PKNOX1 MLX ARNT ARID4B FEZF1 ZNF2 SLC30A9 ZNF766 ZNF143 FOS ATP13A3 TMEM44-AS1 LSG1 ENSG00000244675 LINC00884 RNU6-1101P GP5 RNU6ATAC24P CPN2 ACAP2
GH03H194583 1.3 ENCODE dbSUPER 19.1 +0.4 367 2.3 HDGF ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZHX2 MXD4 LSG1 RNU6ATAC24P TMEM44-AS1 OPA1-AS1 LOC105374291
GH03H194520 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.3 -62.2 -62174 3.2 TBP FOXA2 PKNOX1 ATF1 ARID4B BATF BRCA1 RAD21 YY1 EGR1 ATP13A3 ENSG00000244675 LINC00884 TMEM44-AS1 RNU6-1101P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TMEM44-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TMEM44-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Locations for TMEM44-AS1 Gene

Genomic Locations for TMEM44-AS1 Gene
6,822 bases
Plus strand

Genomic View for TMEM44-AS1 Gene

Genes around TMEM44-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM44-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM44-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM44-AS1 Gene

Proteins for TMEM44-AS1 Gene

Post-translational modifications for TMEM44-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM44-AS1 Gene

Domains & Families for TMEM44-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMEM44-AS1 Gene

Function for TMEM44-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM44-AS1 Gene

Localization for TMEM44-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TMEM44-AS1 Gene

Pathways & Interactions for TMEM44-AS1 Gene

SuperPathways for TMEM44-AS1 Gene

No Data Available

Interacting Proteins for TMEM44-AS1 Gene

Gene Ontology (GO) - Biological Process for TMEM44-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TMEM44-AS1 Gene

Drugs & Compounds for TMEM44-AS1 Gene

No Compound Related Data Available

Transcripts for TMEM44-AS1 Gene

mRNA/cDNA for TMEM44-AS1 Gene

(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMEM44-AS1 Gene

TMEM44 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM44-AS1 Gene

No ASD Table

Relevant External Links for TMEM44-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TMEM44-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMEM44-AS1 Gene

SOURCE GeneReport for Unigene cluster for TMEM44-AS1 Gene:

genes like me logo Genes that share expression patterns with TMEM44-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMEM44-AS1 Gene

Orthologs for TMEM44-AS1 Gene

Evolution for TMEM44-AS1 Gene

Gene Tree for TMEM44-AS1 (if available)
Gene Tree for TMEM44-AS1 (if available)

No data available for Orthologs for TMEM44-AS1 Gene

Paralogs for TMEM44-AS1 Gene

No data available for Paralogs for TMEM44-AS1 Gene

Variants for TMEM44-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM44-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000385070 -- 194,583,216(+) GCCCG(C/T)CTCAC upstream-variant-2KB
rs1000742236 -- 194,585,542(+) GAAAC(C/T)CCATC intron-variant
rs1000813178 -- 194,584,372(+) AGGCT(C/T)TTGAA nc-transcript-variant
rs1001172123 -- 194,583,426(+) AAAGA(A/G)AAGAA upstream-variant-2KB
rs1001173978 -- 194,588,978(+) ATTCC(C/T)GGAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM44-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3599207 CNV loss 21293372

Relevant External Links for TMEM44-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMEM44-AS1 Gene

Disorders for TMEM44-AS1 Gene

Relevant External Links for TMEM44-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for TMEM44-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM44-AS1 Gene

Publications for TMEM44-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60
  3. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 60
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 60

Products for TMEM44-AS1 Gene

Sources for TMEM44-AS1 Gene

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