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Aliases for TMEM30CP Gene

Aliases for TMEM30CP Gene

  • Transmembrane Protein 30C, Pseudogene 2 3 5
  • Transmembrane Protein 30C 2
  • TMEM30C 3
  • CDC50C 3

External Ids for TMEM30CP Gene

Previous HGNC Symbols for TMEM30CP Gene

  • TMEM30C

Summaries for TMEM30CP Gene

GeneCards Summary for TMEM30CP Gene

TMEM30CP (Transmembrane Protein 30C, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM30CP Gene

Genomics for TMEM30CP Gene

Regulatory Elements for TMEM30CP Gene

Enhancers for TMEM30CP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G100156 1.5 Ensembl ENCODE dbSUPER 11.4 -26.3 -26339 4.8 CREB3L1 SIN3A FOS JUNB MXD4 REST TBX21 ZNF592 SMARCA4 HMBOX1 FILIP1L TMEM30CP CMSS1 TBC1D23 COL8A1 GC03P100154 LOC105374009
GH03G100149 1.4 Ensembl ENCODE dbSUPER 11.8 -35.1 -35096 2.8 NFIB ZNF195 FEZF1 TCF12 ZNF366 ZNF350 PAF1 ZNF174 ZIK1 CEBPB FILIP1L ENSG00000273374 CMSS1 TMEM30CP TFG GC03P100154 GC03M100139
GH03G100072 1.5 Ensembl ENCODE dbSUPER 10.3 -110.5 -110542 5.9 HNRNPUL1 PKNOX1 FOXA2 MLX ARID4B TCF12 SLC30A9 ZNF766 CBX5 FOS CMSS1 FILIP1L TBC1D23 TMEM30CP GC03M100078 PIR33357
GH03G100103 1.4 Ensembl ENCODE dbSUPER 10.5 -80.4 -80428 3.3 PKNOX1 YY1 TCF12 GATA2 FOS JUNB REST ATF4 SMARCA4 PBX2 TMEM30CP TBC1D23 FILIP1L GC03M100108 GC03M100078
GH03G100068 1.3 Ensembl ENCODE dbSUPER 10.2 -116.7 -116690 0.4 ELF3 ARID4B ZNF2 RAD21 ZNF143 MIXL1 THAP11 ZNF654 USF2 REST TBC1D23 FILIP1L CMSS1 TMEM30CP GC03M100078 PIR33357
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TMEM30CP on UCSC Golden Path with GeneCards custom track

Genomic Location for TMEM30CP Gene

Chromosome:
3
Start:
100,185,687 bp from pter
End:
100,211,766 bp from pter
Size:
26,080 bases
Orientation:
Plus strand

Genomic View for TMEM30CP Gene

Genes around TMEM30CP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM30CP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM30CP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM30CP Gene

Proteins for TMEM30CP Gene

Post-translational modifications for TMEM30CP Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM30CP Gene

Domains & Families for TMEM30CP Gene

Suggested Antigen Peptide Sequences for TMEM30CP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for TMEM30CP Gene

Function for TMEM30CP Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM30CP Gene

Localization for TMEM30CP Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TMEM30CP gene
Compartment Confidence
plasma membrane 3
cytosol 2
extracellular 1
cytoskeleton 1
mitochondrion 1
peroxisome 1
nucleus 1
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for TMEM30CP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TMEM30CP: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for TMEM30CP Gene

Pathways & Interactions for TMEM30CP Gene

SuperPathways for TMEM30CP Gene

No Data Available

Interacting Proteins for TMEM30CP Gene

Gene Ontology (GO) - Biological Process for TMEM30CP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM30CP Gene

Transcripts for TMEM30CP Gene

mRNA/cDNA for TMEM30CP Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM30CP Gene

No ASD Table

Relevant External Links for TMEM30CP Gene

GeneLoc Exon Structure for
TMEM30CP
ECgene alternative splicing isoforms for
TMEM30CP

Expression for TMEM30CP Gene

NURSA nuclear receptor signaling pathways regulating expression of TMEM30CP Gene:

TMEM30CP
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMEM30CP Gene

Orthologs for TMEM30CP Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for TMEM30CP Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TMEM30C 35
  • 64 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TMEM30C 35
  • 20 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tmem30c 35
  • 19 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TMEM30C 35
  • 18 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TMEM30C 35
  • 17 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TMEM30C 35
  • 17 (a)
OneToOne
chicken
(Gallus gallus)
Aves TMEM30C 35
  • 13 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii tmem30c 35
  • 11 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG9947 35
  • 9 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea F20C5.4 35
  • 7 (a)
ManyToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes -- 35
  • 6 (a)
ManyToMany
CDC50 35
  • 6 (a)
ManyToMany
LEM3 35
  • 5 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 9 (a)
OneToMany
Species where no ortholog for TMEM30CP was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for TMEM30CP Gene

ENSEMBL:
Gene Tree for TMEM30CP (if available)
TreeFam:
Gene Tree for TMEM30CP (if available)

Paralogs for TMEM30CP Gene

No data available for Paralogs for TMEM30CP Gene

Variants for TMEM30CP Gene

Sequence variations from dbSNP and Humsavar for TMEM30CP Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000153630 -- 100,188,160(+) TACTC(A/G)AAAAC intron-variant
rs1000318116 -- 100,186,366(+) CCAGG(A/C)TGGTC intron-variant
rs1000416618 -- 100,192,569(+) CTGGA(A/G)AATTT intron-variant
rs1000624754 -- 100,192,845(+) AGGCC(A/G)GGCGC intron-variant
rs1000689741 -- 100,193,517(+) TTTTT(-/TC)TTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM30CP Gene

Variant ID Type Subtype PubMed ID
dgv4829n100 CNV loss 25217958
nsv523836 CNV gain 19592680
nsv591148 CNV loss 21841781

Variation tolerance for TMEM30CP Gene

Gene Damage Index Score: 0.23; 5.25% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TMEM30CP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM30CP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TMEM30CP Gene

Disorders for TMEM30CP Gene

Relevant External Links for TMEM30CP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMEM30CP
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMEM30CP

No disorders were found for TMEM30CP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM30CP Gene

Publications for TMEM30CP Gene

  1. Identification and characterization of CDC50A, CDC50B and CDC50C genes in silico. (PMID: 15375526) Katoh Y. … Katoh M. (Oncol. Rep. 2004) 2 3 64
  2. Aberrant termination of reproduction-related TMEM30C transcripts in the hominoids. (PMID: 17258408) Osada N. … Kusuda J. (Gene 2007) 3 64

Products for TMEM30CP Gene

Sources for TMEM30CP Gene

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