TMEM30B Gene
protein-coding GIFtS : 48
GCID: GC14 M061744
transmembrane protein 30B
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Aliasesfor TMEM30B gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Transmembrane Protein 30B 1 2 3 CDC50B1 2 3 5 Cell Cycle Control Protein 50B2
Export aliases for TMEM30B gene to outside databases Previous GC identifers: GC14M059735 GC14M060814 GC14M041907
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Summariesfor TMEM30B gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section --
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Genomic Viewsfor TMEM30B gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000014.8 NC_018925.1 NT_026437.12 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the TMEM30B gene promoter: Pax-5 NRSF form 1 POU3F2 (N-Oct-5a) POU3F2 (N-Oct-5b) NRSF form 2 POU3F2 YY1 C/EBPalpha ATF6 Hlf Other transcription factors Search SABiosciences Chromatin IP Primers for TMEM30B Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat TMEM30B
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 14q23.1 Ensembl cytogenetic band: 14q23.1 HGNC cytogenetic band: 14q23.1 TMEM30B Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 14 GeneLoc Exon Structure
GeneLoc location for GC14M061744: view genomic region
(about GC identifiers )
Start:
61,744,088 bp from pter
End:
61,748,558 bp from pter
Size:
4,471 bases
Orientation:
minus strand
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Proteinsfor TMEM30B gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: CC50B_HUMAN, Q3MIR4 (See
protein sequence )Recommended Name: Cell cycle control protein 50B Size : 351 amino acids; 38941 Da
Subcellular location : Membrane; Multi-pass membrane protein (Potential)
Secondary accessions : B3KR84 Q14D00Explore the universe of human proteins at neXtProt for TMEM30B: NX_Q3MIR4 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q3MIR4 TMEM30B Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_001017970.1 ENSEMBL proteins: ENSP00000450842 ENSP00000347930 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0016021 integral to membrane
IEA --
TMEM30B for ontologies About GeneDecksing TMEM30B Antibody Products: Assay Products for TMEM30B:
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Protein
Domains / Familiesfor TMEM30B gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
TMEM30B for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q3MIR4 ProtoNet protein and cluster: Q3MIR4
1 Blocks protein family : IPB005045 Eukaryotic protein of unknown function DUF284 UniProtKB/Swiss-Prot: CC50B_HUMAN, Q3MIR4 Similarity : Belongs to the CDC50/LEM3 family
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Functionfor TMEM30B gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TMEM30B (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TMEM30BOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: TMEM30B (NM_001017970 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TMEM30B Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TMEM30B
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TMEM30B
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005515 protein binding
IPI --
TMEM30B for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for TMEM30B :
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Pathways & Interactionsfor TMEM30B gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TMEM30B STRING Interaction
Network Preview (showing 5 interactants - click image to see more details)5/40 Interacting proteins for TMEM30B (Q3MIR4 3 ENSP00000347930 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 40 )About this table Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0070863 positive regulation of protein exit from endoplasmic reticulum
IDA --
TMEM30B for ontologies About GeneDecksing
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Drugs & Compoundsfor TMEM30B gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for TMEM30B Search CenterWatch for drugs/clinical trials and news about TMEM30B / CC50B
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Transcriptsfor TMEM30B gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for TMEM30B gene: NM_001017970.2 Unigene Cluster for TMEM30B:
Transmembrane protein 30B Hs.146180 [show with all ESTs ] Unigene Representative Sequence: NM_001017970 4 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000555868 (uc001xfl.3 ) ENST00000557163 ENST00000554497 ENST00000355702 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TMEM30B (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TMEM30BOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: TMEM30B (NM_001017970 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TMEM30B Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TMEM30B
Additional cDNA sequence: AK309281.1 AL080078.1 BC033845.1 BC101726.1 BC113559.1
4 DOTS entries : DT.441292 DT.429626
DT.95268786 DT.95082156 24/112 AceView cDNA sequences (see all 112 ):
AI697010 AW001762 AI343269 AI261370 AA344230 AI568945 CA950865 AI420342 BF590065 BF222257 AI814620 AW271437 AI701446 AA975312 BM818997 BF476194 BF056190 BE669436 AI216049 AL080078 BF195471 AA337255 BE504706 AW264340 GeneLoc Exon Structure
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Expression for TMEM30B gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section TMEM30B expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: --
About this image TMEM30B expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See TMEM30B Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for TMEM30B SOURCE GeneReport for Unigene cluster: Hs.146180 SABiosciences Custom PCR Arrays for TMEM30B Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for TMEM30BBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat TMEM30B QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat TMEM30B QIAGEN QuantiFast Probe-based Assays in human , mouse , rat TMEM30B In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TMEM30B
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Orthologsfor TMEM30B gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for TMEM30B gene from 8/28 species (see all 28 ) About this table
ENSEMBL Gene Tree for TMEM30B (if available)TreeFam Gene Tree for TMEM30B (if available)
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Paralogsfor TMEM30B gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for TMEM30B gene TMEM30A 2 1 SIMAP similar gene for TMEM30B using alignment to 1 protein entry: CC50B_HUMAN :TMEM30A
TMEM30B for paralogs About GeneDecksing
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Genomic Variantsfor TMEM30B gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 14 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for TMEM30B (61744088 - 61748558 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for TMEM30B: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing TMEM30B
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Disorders
/ Diseasesfor TMEM30B gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
TMEM30B for disorders About GeneDecksing
OMIM gene information: 611029
OMIM disorders : --4 diseases for TMEM30B : About MalaCards intrahepatic cholestasis cholestasis meningioma malaria Export disorders for TMEM30B gene to outside databases
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Publicationsfor TMEM30B gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for TMEM30B gene integrated from 9 sources : (articles sorted by number of sources associating them with TMEM30B) Utopia : connect your pdf to the dynamic world of online information
Identification and characterization of CDC50A, CDC50B and CDC50C genes in silico. (PubMed id 15375526) 1 , 2 , 3, 9 Katoh Y. and Katoh M. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Differential expression profiling analyses identifies downregulation of 1p, 6q, and 14q genes and overexpression of 6p histone clust er 1 genes as markers of recurrence in meningiomas. (PubMed id 20685720) 1 PAcrez-MagA!n E....MelAcndez B. (2010) Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560) 1 Kimura K.... Sugano S. (2006) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002)
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External Searches for TMEM30B gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing TMEM30B gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing TMEM30B gene
(According to HUGE )
About This Section --
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Specialized Databases showing TMEM30B gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for TMEM30B Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for TMEM30B gene: Search GeneIP for patents involving TMEM30B GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor TMEM30B gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for TMEM30B OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for TMEM30B OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for TMEM30B OriGene Protein Over-expression Lysate for TMEM30B Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for TMEM30B OriGene 3'-UTR Clone for TMEM30B OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TMEM30B OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TMEM30B Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for TMEM30B OriGene Custom Protein Services for TMEM30B OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat TMEM30B QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing TMEM30B QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat TMEM30B QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat TMEM30B QIAGEN QuantiFast Probe-based Assays in human , mouse , rat TMEM30B QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat TMEM30B
Search Tocris compounds for TMEM30B
TMEM30B Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TMEM30B
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TMEM30B
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Databases for TMEM30B
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Expression for TMEM30B
Function for TMEM30B
Genomic Views for TMEM30B
Intellectual Property for TMEM30B
Orthologs for TMEM30B
Paralogs for TMEM30B
Pathways / Interactions for TMEM30B
Products for TMEM30B
Proteins for TMEM30B
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