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Aliases for TMEM254-AS1 Gene

Subcategory (RNA class) for TMEM254-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for TMEM254-AS1 Gene

  • TMEM254 Antisense RNA 1 2 3

External Ids for TMEM254-AS1 Gene

ORGUL Members for TMEM254-AS1 Gene

Summaries for TMEM254-AS1 Gene

GeneCards Summary for TMEM254-AS1 Gene

TMEM254-AS1 (TMEM254 Antisense RNA 1) is a RNA Gene, and belongs to antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM254-AS1 Gene

Genomics for TMEM254-AS1 Gene

Genomic Location for TMEM254-AS1 Gene

Start:
80,046,233 bp from pter
End:
80,079,193 bp from pter
Size:
32,961 bases
Orientation:
Minus strand

Genomic View for TMEM254-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TMEM254-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM254-AS1 Gene

No data available for Regulatory Elements for TMEM254-AS1 Gene

Proteins for TMEM254-AS1 Gene

Post-translational modifications for TMEM254-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM254-AS1 Gene

Domains for TMEM254-AS1 Gene

Gene Families for TMEM254-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with TMEM254-AS1: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for TMEM254-AS1 Gene

Function for TMEM254-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TMEM254-AS1 Gene

Localization for TMEM254-AS1 Gene

No data available for Gene Ontology (GO) - Cellular Components for TMEM254-AS1 Gene

Pathways for TMEM254-AS1 Gene

SuperPathways for TMEM254-AS1 Gene

No Data Available

Interacting Proteins for TMEM254-AS1 Gene

Gene Ontology (GO) - Biological Process for TMEM254-AS1 Gene

None

No data available for Pathways by source for TMEM254-AS1 Gene

Transcripts for TMEM254-AS1 Gene

mRNA/cDNA for TMEM254-AS1 Gene

(12) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMEM254-AS1 Gene

TMEM254 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM254-AS1 Gene

No ASD Table

Relevant External Links for TMEM254-AS1 Gene

GeneLoc Exon Structure for
TMEM254-AS1
ECgene alternative splicing isoforms for
TMEM254-AS1

Expression for TMEM254-AS1 Gene

mRNA expression in normal human tissues for TMEM254-AS1 Gene

SOURCE GeneReport for Unigene cluster for TMEM254-AS1 Gene Hs.524453

genes like me logo Genes that share expressions with TMEM254-AS1: view

Orthologs for TMEM254-AS1 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for TMEM254-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Cphx1 16
Species with no ortholog for TMEM254-AS1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TMEM254-AS1 Gene

ENSEMBL:
Gene Tree for TMEM254-AS1 (if available)
TreeFam:
Gene Tree for TMEM254-AS1 (if available)

Paralogs for TMEM254-AS1 Gene

No data available for Paralogs for TMEM254-AS1 Gene

Variants for TMEM254-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM254-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs1537835 -- 80,070,396(-) tcatt(C/G)agcca intron-variant
rs1537836 -- 80,070,388(-) ccagc(A/C)gctgt intron-variant
rs1889859 -- 80,064,368(+) taatc(A/G)tttag intron-variant
rs1932572 -- 80,066,617(+) cccat(C/T)tctac intron-variant
rs2152550 -- 80,058,753(+) TGCAA(A/G)CTCCG intron-variant

Relevant External Links for TMEM254-AS1 Gene

HapMap Linkage Disequilibrium report
TMEM254-AS1

No data available for Structural Variations from Database of Genomic Variants (DGV) for TMEM254-AS1 Gene

Disorders for TMEM254-AS1 Gene

No disorders were found for TMEM254-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for TMEM254-AS1 Gene

Publications for TMEM254-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for TMEM254-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TMEM254-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TMEM254-AS1
    • Block miRNA regulation of TMEM254-AS1 using miScript Target Protectors

    Sources for TMEM254-AS1 Gene

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