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Aliases for TMEM254-AS1 Gene

Subcategory (RNA class) for TMEM254-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TMEM254-AS1 Gene

  • TMEM254 Antisense RNA 1 2 3 5

External Ids for TMEM254-AS1 Gene

Previous GeneCards Identifiers for TMEM254-AS1 Gene

  • GC10M081807

Summaries for TMEM254-AS1 Gene

GeneCards Summary for TMEM254-AS1 Gene

TMEM254-AS1 (TMEM254 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM254-AS1 Gene

Genomics for TMEM254-AS1 Gene

Regulatory Elements for TMEM254-AS1 Gene

Enhancers for TMEM254-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F080046 0.6 ENCODE 40.8 +32.1 32134 0.2 ELF3 CTCF ZNF654 TEAD1 TEAD4 TEAD2 REST ZNF2 RAD21 TEAD3 TMEM254-AS1 SFTPA2 ENSG00000282432 C1DP4
GH10F080077 0.2 ENCODE 38.5 +0.3 290 2.6 ATF1 ARID4B SIN3A DMAP1 ZNF48 ZNF2 ETS1 YY1 ZNF121 GLIS2 TMEM254-AS1 PGGT1BP2 NPAP1P2 ZNF519P1 ENSG00000235858 LOC105378386 TMEM254 LINC00857 ANXA11
GH10F080069 0.2 ENCODE 36.1 +9.0 8969 1.2 NFIA REST TMEM254-AS1 MBL1P ANXA11 LINC00857 TMEM254 GC10P080159
GH10F080103 1.5 FANTOM5 Ensembl ENCODE 31.4 -25.9 -25889 3.5 RFX1 RFX3 FOXP2 MAFK NR2F2 TMEM254-AS1 TMEM254 SFTPD PIR41694 ENSG00000279399
GH10F080100 0.2 ENCODE 27.4 -21.8 -21779 1.3 GATA3 PKNOX1 CTBP1 ZHX2 DPF2 TMEM254-AS1 MBL1P TMEM254 ANXA11 LINC00857 SFTPD ENSG00000279399 PIR41694
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TMEM254-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TMEM254-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000005559 193 2001 ATF1 ARID4B SIN3A DMAP1 ZNF48 ZNF2 ETS1 YY1 ZNF121 GLIS2

Genomic Location for TMEM254-AS1 Gene

Chromosome:
10
Start:
80,046,233 bp from pter
End:
80,079,193 bp from pter
Size:
32,961 bases
Orientation:
Minus strand

Genomic View for TMEM254-AS1 Gene

Genes around TMEM254-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM254-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM254-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM254-AS1 Gene

Proteins for TMEM254-AS1 Gene

Post-translational modifications for TMEM254-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM254-AS1 Gene

Domains & Families for TMEM254-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMEM254-AS1 Gene

Function for TMEM254-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM254-AS1 Gene

Localization for TMEM254-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TMEM254-AS1 Gene

Pathways & Interactions for TMEM254-AS1 Gene

SuperPathways for TMEM254-AS1 Gene

No Data Available

Interacting Proteins for TMEM254-AS1 Gene

Gene Ontology (GO) - Biological Process for TMEM254-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM254-AS1 Gene

Transcripts for TMEM254-AS1 Gene

mRNA/cDNA for TMEM254-AS1 Gene

(12) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMEM254-AS1 Gene

TMEM254 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM254-AS1 Gene

No ASD Table

Relevant External Links for TMEM254-AS1 Gene

GeneLoc Exon Structure for
TMEM254-AS1
ECgene alternative splicing isoforms for
TMEM254-AS1

Expression for TMEM254-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TMEM254-AS1 Gene

SOURCE GeneReport for Unigene cluster for TMEM254-AS1 Gene:

Hs.524453
genes like me logo Genes that share expression patterns with TMEM254-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TMEM254-AS1 Gene

Orthologs for TMEM254-AS1 Gene

Evolution for TMEM254-AS1 Gene

ENSEMBL:
Gene Tree for TMEM254-AS1 (if available)
TreeFam:
Gene Tree for TMEM254-AS1 (if available)

No data available for Orthologs for TMEM254-AS1 Gene

Paralogs for TMEM254-AS1 Gene

No data available for Paralogs for TMEM254-AS1 Gene

Variants for TMEM254-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM254-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs10430639 -- 80,080,364(+) AGCTG(A/G)CAGAA intron-variant, upstream-variant-2KB
rs10430708 -- 80,078,315(+) ATTCA(C/T)TCATT intron-variant, upstream-variant-2KB
rs10594809 -- 80,074,230(+) CCACC(-/TCA)TCATA intron-variant
rs10618107 -- 80,061,925(+) CATAT(-/TA)TATAT intron-variant
rs10635135 -- 80,073,738(+) TTAAA(-/AAT)AATAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM254-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv941n100 CNV gain 25217958
esv275122 CNV gain+loss 21479260
esv3578987 CNV loss 25503493
esv3623933 CNV loss 21293372
esv3623934 CNV gain 21293372
esv3623935 CNV loss 21293372
esv3623936 CNV gain 21293372
esv3623938 CNV loss 21293372
esv3623939 CNV loss 21293372
nsv1141879 OTHER inversion 24896259
nsv551635 CNV loss 21841781
nsv831922 CNV loss 17160897

Relevant External Links for TMEM254-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM254-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMEM254-AS1 Gene

Disorders for TMEM254-AS1 Gene

Relevant External Links for TMEM254-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMEM254-AS1

No disorders were found for TMEM254-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM254-AS1 Gene

Publications for TMEM254-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for TMEM254-AS1 Gene

Sources for TMEM254-AS1 Gene

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