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TMEM232 Gene

protein-coding   GIFtS: 36
GCID: GC05M109624

Transmembrane Protein 232

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
Transmembrane Protein 2321 2

External Ids:    HGNC: 372701   Entrez Gene: 6429872   Ensembl: ENSG000001869527   UniProtKB: C9JQI73   
ORGUL members:         

Export aliases for TMEM232 gene to outside databases

Previous GC identifers: GC05M109755 GC05M104934


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for TMEM232 Gene:
TMEM232 (transmembrane protein 232) is a protein-coding gene. Diseases associated with TMEM232 include allergic rhinitis, and rhinitis.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Search for regulatory transcription factor binding sites for TMEM232
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for TMEM232

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat TMEM232


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5q22.1   Ensembl cytogenetic band:  5q22.1   HGNC cytogenetic band: 5q22.1

TMEM232 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TMEM232 gene location

GeneLoc information about chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05M109624:  view genomic region     (about GC identifiers)

Start:
109,624,934 bp from pter      End:
110,074,657 bp from pter
Size:
449,724 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: TM232_HUMAN, C9JQI7 (See protein sequence)
Recommended Name: Transmembrane protein 232  
Size: 657 amino acids; 76453 Da
Secondary accessions: B4DKF4
Alternative splicing: 2 isoforms:  C9JQI7-1   C9JQI7-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for TMEM232: NX_C9JQI7

Explore proteomics data for TMEM232 at MOPED


See TMEM232 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_001034852.3  
ENSEMBL proteins: 
 ENSP00000401477   ENSP00000427785   ENSP00000423904   ENSP00000421614   ENSP00000424807  
 ENSP00000394680  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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ProtoNet protein and cluster: C9JQI7


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Animal Models:
   inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for TMEM232
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
TM232_HUMAN, C9JQI7: Membrane; Multi-pass membrane protein (Potential)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
plasma membrane3
peroxisome2

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0016021integral component of membrane IEA--

TMEM232 for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for TMEM232
Interactions:

    Search GeneGlobe Interaction Network for TMEM232

STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

1 Interacting protein for TMEM232 (ENSP000003946804) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
KNCNENSP000003796074STRING: ENSP00000379607
About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for TMEM232 (TM232)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for TMEM232 gene: 
NM_001039763.3  

14 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000507188(uc003kov.1) ENST00000508571(uc003kow.1) ENST00000515518(uc003kox.3)
ENST00000455884 ENST00000512003 ENST00000515363 ENST00000511883 ENST00000515278
ENST00000512886 ENST00000502857 ENST00000503527 ENST00000512577 ENST00000506890
ENST00000429839(uc011cvh.2 uc003koy.4)
miRNA
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hsa-miR-526b hsa-miR-32*
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Inhib. RNA
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GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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TMEM232 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: ATTGTACAGC
TMEM232 Expression
About this image

TMEM232 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

TMEM232 Protein Expression
    Custom PCR Arrays for TMEM232
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In Situ
Assay Products:
 

 
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for TMEM232 gene from Selected species (see all 11)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Tmem2321 , 5 transmembrane protein 2321, 5 75.31(n)1
67.66(a)1
  17 (34.90 cM)5
3811071  NM_001008973.21  NP_001008973.21 
 652560055 
lizard
(Anolis carolinensis)
Reptilia TMEM2326
transmembrane protein 232
38(a)
1 ↔ 1
GL343193.1(5979504-6150305)
tropical clawed frog
(Xenopus tropicalis)
Amphibia tmem2321 transmembrane protein 232 55.25(n)
41.25(a)
  100492950  XM_002935476.2  XP_002935522.2 
zebrafish
(Danio rerio)
Actinopterygii tmem2321 transmembrane protein 232 48.42(n)
34.75(a)
  793774  NM_001100053.1  NP_001093523.1 


ENSEMBL Gene Tree for TMEM232 (if available)
TreeFam Gene Tree for TMEM232 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for TMEM232 (see all 6716)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 5 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1927571711,2
--109754724(+) TGGATA/GGAAGG 1 -- ds50010--------
rs1853709051,2
--109754734(+) GATGGC/GAGAAA 1 -- ds50010--------
rs1906669141,2
--109754737(+) GGGAGA/GAAATT 1 -- ds50010--------
rs112852561,2
C--109754869(+) ATAGA-/TTTTTT 1 -- ds50012Minor allele frequency- T:0.25NA 4
rs1118304271,2
C--109754927(+) GGAAAG/AGTATA 1 -- ds50012Minor allele frequency- A:0.04CSA WA 120
rs3116971,2
C,F,H--109755056(-) GTTGCC/ATGTAG 1 -- ds500121Minor allele frequency- A:0.45NS EA NA WA CSA 2344
rs558398601,2
C,F--109755073(+) CTGCCG/ATATGT 1 -- ds50011Minor allele frequency- A:0.50WA 2
rs1816866411,2
--109755238(+) CCCATA/TTAAAA 1 -- ut310--------
rs1470562231,2
C--109755270(+) TTTTAA/CAATAC 1 -- ut310--------
rs3116961,2
C,F,O,A,H--109755300(-) TCACTC/TGGTTA 1 -- ut3126Minor allele frequency- T:0.40MN EA NA NS WA CSA 2747

HapMap Linkage Disequilibrium report for TMEM232 (109624934 - 109874934 bp, first 250kb of TMEM232)

Structural Variations
     Database of Genomic Variants (DGV) Selected variations for TMEM232 (see all 18):    About this table    
Variant IDTypeSubtypePubMed ID
esv2667285CNV Deletion23128226
esv269057CNV Insertion20981092
nsv823172CNV Loss20364138
nsv882705CNV Loss21882294
nsv818375CNV Loss17921354
nsv4957CNV Loss18451855
nsv882700CNV Loss21882294
esv34732CNV Loss17911159
dgv6292n71CNV Loss21882294
nsv525752CNV Loss19592680

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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4 diseases for TMEM232:    
About MalaCards
allergic rhinitis    rhinitis    atopic dermatitis    dermatitis

1 disease from the University of Copenhagen DISEASES database for TMEM232:
Atopic dermatitis

TMEM232 for disorders           About GeneDecksing

Genetic Association Database (GAD): TMEM232
Human Genome Epidemiology (HuGE) Navigator: TMEM232 (4 documents)

Export disorders for TMEM232 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for TMEM232 gene integrated from 10 sources:
(articles sorted by number of sources associating them with TMEM232)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1, 4 Rose J.E....Uhl G.R. (Mol. Med. 2010)
  2. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PubMed id 20628086)1, 4 Bailey S.D....Anand S. (Diabetes Care 2010)
  3. Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data. (PubMed id 19584346)1, 4 Vasan R.S....Blankenberg S. (JAMA 2009)
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
  5. A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order. (PubMed id 22036096)1 Ramasamy A....Jarvis D.L. (J. Allergy Clin. Immunol. 2011)
  6. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PubMed id 19913121)1 Talmud P.J.... . (Am. J. Hum. Genet. 2009)
  7. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PubMed id 17903294)1 Yang Q....O'Donnell C.J. (BMC Med. Genet. 2007)
  8. The DNA sequence and comparative analysis of human chromosome 5. (PubMed id 15372022)2 Schmutz J.... Rubin E.M. (Nature 2004)
  9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  10. Normalization and subtraction: two approaches to facilitate gene discovery. (PubMed id 8889548)1 Bonaldo M.F.... Soares M.B. (Genome Res. 1996)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 642987 HGNC: 37270 Ensembl:ENSG00000186952 euGenes: HUgn642987 ECgene: TMEM232
H-InvDB: TMEM232

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for TMEM232 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for TMEM232 gene:
Search GeneIP for patents involving TMEM232

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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 Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat TMEM232
 inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for TMEM232
 inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for TMEM232
 LSBio Antibodies in human, mouse, rat for TMEM232
Customized transgenic rodents for:
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 Off-target effect monitoring
 Translational medicine
 Tissue-specific gene expresssion
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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