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Aliases for TMEM220-AS1 Gene

Subcategory (RNA class) for TMEM220-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TMEM220-AS1 Gene

  • TMEM220 Antisense RNA 1 2 3 5
  • CTC-297N7.5 3

External Ids for TMEM220-AS1 Gene

Previous GeneCards Identifiers for TMEM220-AS1 Gene

  • GC00U934062

Summaries for TMEM220-AS1 Gene

GeneCards Summary for TMEM220-AS1 Gene

TMEM220-AS1 (TMEM220 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM220-AS1 Gene

Genomics for TMEM220-AS1 Gene

Regulatory Elements for TMEM220-AS1 Gene

Promoters for TMEM220-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around TMEM220-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TMEM220-AS1 Gene

Chromosome:
17
Start:
10,729,777 bp from pter
End:
10,815,164 bp from pter
Size:
85,388 bases
Orientation:
Plus strand

Genomic View for TMEM220-AS1 Gene

Genes around TMEM220-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM220-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM220-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM220-AS1 Gene

Proteins for TMEM220-AS1 Gene

Post-translational modifications for TMEM220-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM220-AS1 Gene

Domains & Families for TMEM220-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMEM220-AS1 Gene

Function for TMEM220-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM220-AS1 Gene

Localization for TMEM220-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TMEM220-AS1 Gene

Pathways & Interactions for TMEM220-AS1 Gene

SuperPathways for TMEM220-AS1 Gene

No Data Available

Interacting Proteins for TMEM220-AS1 Gene

Gene Ontology (GO) - Biological Process for TMEM220-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM220-AS1 Gene

Drugs & Compounds for TMEM220-AS1 Gene

No Compound Related Data Available

Transcripts for TMEM220-AS1 Gene

mRNA/cDNA for TMEM220-AS1 Gene

(5) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMEM220-AS1 Gene

TMEM220 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM220-AS1 Gene

No ASD Table

Relevant External Links for TMEM220-AS1 Gene

GeneLoc Exon Structure for
TMEM220-AS1
ECgene alternative splicing isoforms for
TMEM220-AS1

Expression for TMEM220-AS1 Gene

mRNA expression in normal human tissues for TMEM220-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TMEM220-AS1 Gene

This gene is overexpressed in Liver (x9.9).

SOURCE GeneReport for Unigene cluster for TMEM220-AS1 Gene Hs.569782

genes like me logo Genes that share expression patterns with TMEM220-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for TMEM220-AS1 Gene

Orthologs for TMEM220-AS1 Gene

Evolution for TMEM220-AS1 Gene

ENSEMBL:
Gene Tree for TMEM220-AS1 (if available)
TreeFam:
Gene Tree for TMEM220-AS1 (if available)

No data available for Orthologs for TMEM220-AS1 Gene

Paralogs for TMEM220-AS1 Gene

No data available for Paralogs for TMEM220-AS1 Gene

Variants for TMEM220-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM220-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs169341 -- 10,736,054(-) GGCCA(C/G)GTAGG intron-variant
rs202303 -- 10,737,379(-) TCACA(C/G/T)GCTTC intron-variant
rs202304 -- 10,735,091(-) gccac(C/T)gtgcc intron-variant
rs202305 -- 10,735,082(-) cctgg(A/C)taatt intron-variant
rs202306 -- 10,733,965(-) ACCTT(C/G)GGAGC intron-variant

Relevant External Links for TMEM220-AS1 Gene

HapMap Linkage Disequilibrium report
TMEM220-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TMEM220-AS1 Gene

Disorders for TMEM220-AS1 Gene

Relevant External Links for TMEM220-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMEM220-AS1

No disorders were found for TMEM220-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM220-AS1 Gene

Publications for TMEM220-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 67

Products for TMEM220-AS1 Gene

Sources for TMEM220-AS1 Gene

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