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Aliases for TMEM220-AS1 Gene

Subcategory (RNA class) for TMEM220-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TMEM220-AS1 Gene

  • TMEM220 Antisense RNA 1 2 3 5
  • CTC-297N7.5 3

External Ids for TMEM220-AS1 Gene

Previous GeneCards Identifiers for TMEM220-AS1 Gene

  • GC00U934062

Summaries for TMEM220-AS1 Gene

GeneCards Summary for TMEM220-AS1 Gene

TMEM220-AS1 (TMEM220 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM220-AS1 Gene

Genomics for TMEM220-AS1 Gene

Regulatory Elements for TMEM220-AS1 Gene

Enhancers for TMEM220-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F010793 0.8 Ensembl ENCODE 10.4 +69.4 69356 11.7 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 FOS SP3 ADPRM SCO1 PIRT MYH3 TMEM220-AS1 ENSG00000263508 LINC00675 ENSG00000266114
GH17F010775 0.7 ENCODE 6.9 +47.2 47229 3.0 SOX5 SOX13 ZNF548 ZNF7 ADPRM ENSG00000261433 MAGOH2P TMEM220-AS1 GC17M010779 GC17M010769
GH17F010784 0.9 ENCODE 6.6 +56.4 56446 3.4 HLF MAFG MAFF ZNF316 SCRT2 FOS KDM1A MAFK EMSY ADPRM RNU6-1065P RPL15P21 MYH3 SCO1 TMEM220 TMEM220-AS1 ENSG00000266114 GC17M010779
GH17F010754 1.4 FANTOM5 Ensembl ENCODE 6.4 +26.9 26938 3.9 SOX13 ARID4B RAD21 RARA YY1 E2F1 GATA3 CTBP1 POLR2A ZNF366 ADPRM TMEM220-AS1 ENSG00000264016 TMEM220 PIRT SHISA6 GC17M010753 ENSG00000240813
GH17F010736 0.9 Ensembl ENCODE 5.7 +8.6 8582 3.7 ELF3 CTCF TFAP4 ZNF211 KLF17 THRB RAD21 RARA YY1 ZFHX2 TMEM220 RNU6-1065P RPL15P21 SCO1 ADPRM MYH3 TMEM220-AS1 ENSG00000264016 ENSG00000240813
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TMEM220-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TMEM220-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001340910 424 2400 ARID4B SIN3A DMAP1 ZNF48 RARA YY1 GLIS2 EGR1 MIXL1 EGR2

Genomic Location for TMEM220-AS1 Gene

Chromosome:
17
Start:
10,729,777 bp from pter
End:
10,815,164 bp from pter
Size:
85,388 bases
Orientation:
Plus strand

Genomic View for TMEM220-AS1 Gene

Genes around TMEM220-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM220-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM220-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM220-AS1 Gene

Proteins for TMEM220-AS1 Gene

Post-translational modifications for TMEM220-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM220-AS1 Gene

Domains & Families for TMEM220-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMEM220-AS1 Gene

Function for TMEM220-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM220-AS1 Gene

Localization for TMEM220-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TMEM220-AS1 Gene

Pathways & Interactions for TMEM220-AS1 Gene

SuperPathways for TMEM220-AS1 Gene

No Data Available

Interacting Proteins for TMEM220-AS1 Gene

Gene Ontology (GO) - Biological Process for TMEM220-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM220-AS1 Gene

Transcripts for TMEM220-AS1 Gene

mRNA/cDNA for TMEM220-AS1 Gene

(5) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMEM220-AS1 Gene

TMEM220 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM220-AS1 Gene

No ASD Table

Relevant External Links for TMEM220-AS1 Gene

GeneLoc Exon Structure for
TMEM220-AS1
ECgene alternative splicing isoforms for
TMEM220-AS1

Expression for TMEM220-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TMEM220-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TMEM220-AS1 Gene

This gene is overexpressed in Liver (x9.9).

SOURCE GeneReport for Unigene cluster for TMEM220-AS1 Gene:

Hs.569782
genes like me logo Genes that share expression patterns with TMEM220-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TMEM220-AS1 Gene

Orthologs for TMEM220-AS1 Gene

Evolution for TMEM220-AS1 Gene

ENSEMBL:
Gene Tree for TMEM220-AS1 (if available)
TreeFam:
Gene Tree for TMEM220-AS1 (if available)

No data available for Orthologs for TMEM220-AS1 Gene

Paralogs for TMEM220-AS1 Gene

No data available for Paralogs for TMEM220-AS1 Gene

Variants for TMEM220-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM220-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1008977 -- 10,806,357(-) GTCCA(C/T)GCCTG intron-variant
rs1008978 -- 10,803,885(+) GACCG(C/T)GTCCA intron-variant, nc-transcript-variant
rs10521170 -- 10,733,813(+) TTTTA(A/G)TAGTC intron-variant
rs10521171 -- 10,737,644(+) TAGGC(A/G)TACTC intron-variant
rs10527049 -- 10,777,131(+) CTCAA(-/AATAATAATAAT/AATAATAATAATAAT)AATAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM220-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1506826 CNV insertion 17803354
esv1720636 CNV insertion 17803354
esv2675560 CNV deletion 23128226
esv2715637 CNV deletion 23290073
esv2715638 CNV deletion 23290073
esv2715639 CNV deletion 23290073
esv3639941 CNV loss 21293372
nsv1058835 CNV loss 25217958
nsv1065819 CNV gain 25217958
nsv1070808 CNV deletion 25765185
nsv1077671 CNV insertion 25765185
nsv1125632 CNV tandem duplication 24896259
nsv1129186 CNV insertion 24896259
nsv1141778 CNV insertion 24896259
nsv1144789 CNV deletion 24896259
nsv1148512 CNV insertion 26484159
nsv523093 CNV loss 19592680
nsv574351 CNV loss 21841781
nsv833367 CNV loss 17160897

Relevant External Links for TMEM220-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM220-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMEM220-AS1 Gene

Disorders for TMEM220-AS1 Gene

Relevant External Links for TMEM220-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMEM220-AS1

No disorders were found for TMEM220-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM220-AS1 Gene

Publications for TMEM220-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for TMEM220-AS1 Gene

Sources for TMEM220-AS1 Gene

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