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TMEM208 Gene

protein-coding   GIFtS: 45
GCID: GC16P067261

Transmembrane Protein 208

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
Transmembrane Protein 2081 2

External Ids:    HGNC: 250151   Entrez Gene: 291002   Ensembl: ENSG000001687017   UniProtKB: Q9BTX33   
ORGUL members:         

Export aliases for TMEM208 gene to outside databases

Previous GC identifers: GC16P065819 GC16P053134


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for TMEM208 Gene:
TMEM208 (transmembrane protein 208) is a protein-coding gene.

UniProtKB/Swiss-Prot: TM208_HUMAN, Q9BTX3
Function: May function as a negative regulator of endoplasmic reticulum-stress induced autophagy




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000016.9  NT_010498.16  NC_018927.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the TMEM208 gene promoter:
         AhR   Bach1   Egr-3   AP-4   NF-kappaB   RORalpha2   Sox9   Meis-1a   NF-kappaB1   Meis-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTMEM208 promoter sequence
   Search Chromatin IP Primers for TMEM208

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat TMEM208


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 16q22.1   Ensembl cytogenetic band:  16q22.1   HGNC cytogenetic band: 16q22.1

TMEM208 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TMEM208 gene location

GeneLoc information about chromosome 16         GeneLoc Exon Structure

GeneLoc location for GC16P067261:  view genomic region     (about GC identifiers)

Start:
67,261,006 bp from pter      End:
67,263,182 bp from pter
Size:
2,177 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: TM208_HUMAN, Q9BTX3 (See protein sequence)
Recommended Name: Transmembrane protein 208  
Size: 173 amino acids; 19642 Da
Sequence caution: Sequence=AAF29134.1; Type=Frameshift; Positions=88, 96, 114;
Secondary accessions: Q05CT0 Q96D25 Q9NZZ7
Alternative splicing: 2 isoforms:  Q9BTX3-1   Q9BTX3-2   

Explore the universe of human proteins at neXtProt for TMEM208: NX_Q9BTX3

Explore proteomics data for TMEM208 at MOPED


See TMEM208 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_054906.2  
ENSEMBL proteins: 
 ENSP00000305892   ENSP00000462217   ENSP00000457502   ENSP00000454579   ENSP00000464439  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro protein domain:
 IPR008506 DUF788_TMEM208

Graphical View of Domain Structure for InterPro Entry Q9BTX3

ProtoNet protein and cluster: Q9BTX3

UniProtKB/Swiss-Prot: TM208_HUMAN, Q9BTX3
Similarity: Belongs to the TMEM208 family


Find genes that share domains with TMEM208           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: TM208_HUMAN, Q9BTX3
Function: May function as a negative regulator of endoplasmic reticulum-stress induced autophagy

Phenotypes:
     1 GenomeRNAi human phenotype for TMEM208:

 Synthetic lethal with c-Myc af 

Animal Models:
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miRNA
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miRTarBase miRNAs that target TMEM208:
hsa-mir-26b-5p (MIRT029156)

Block miRNA regulation of human, mouse, rat TMEM208 using miScript Target Protectors
2 qRT-PCR Assays for microRNAs that regulate TMEM208:
hsa-miR-3140-3p hsa-miR-4272
SwitchGear 3'UTR luciferase reporter plasmidTMEM208 3' UTR sequence
Inhib. RNA
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Predesigned siRNA for gene silencing in human, mouse, rat TMEM208

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Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TMEM208

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
TM208_HUMAN, Q9BTX3: Endoplasmic reticulum membrane; Multi-pass membrane protein
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
plasma membrane3
cytosol2
endoplasmic reticulum1
extracellular1
golgi apparatus1
mitochondrion1

Gene Ontology (GO): 2 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005789endoplasmic reticulum membrane IEA--
GO:0016021integral component of membrane IEA--

Find genes that share ontologies with TMEM208           About GenesLikeMe


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for TMEM208
Interactions:

    Search GeneGlobe Interaction Network for TMEM208

STRING Interaction Network Preview (showing 5 interactants - click image to see 6)

Selected Interacting proteins for TMEM208 (ENSP000003058924) via UniProtKB, MINT, STRING, and/or I2D (see all 6)
InteractantInteraction Details
GeneCardExternal ID(s)
ATG9AENSP000003551734STRING: ENSP00000355173
SLC35B2ENSP000003774014STRING: ENSP00000377401
SEC61BENSP000002236414STRING: ENSP00000223641
WRBENSP000003277164STRING: ENSP00000327716
YIF1AENSP000003660984STRING: ENSP00000366098
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Gene Ontology (GO): 1 biological process term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006914autophagy IEA--

Find genes that share ontologies with TMEM208           About GenesLikeMe



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for TMEM208 (TM208)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for TMEM208 gene: 
NM_014187.3  

Unigene Cluster for TMEM208:

Transmembrane protein 208
Hs.433203  [show with all ESTs]
Unigene Representative Sequence: BF204699
12 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000567193 ENST00000563168 ENST00000304800(uc002esi.2 uc002esj.2)
ENST00000566486 ENST00000563953 ENST00000561586 ENST00000562235 ENST00000565201
ENST00000564087 ENST00000563426 ENST00000563271 ENST00000564649
miRNA
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2 qRT-PCR Assays for microRNAs that regulate TMEM208:
hsa-miR-3140-3p hsa-miR-4272
SwitchGear 3'UTR luciferase reporter plasmidTMEM208 3' UTR sequence
Inhib. RNA
Products:
     
OriGene RNAi products in human, mouse, rat for TMEM208
Predesigned siRNA for gene silencing in human, mouse, rat TMEM208
Clone
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GenScript: all cDNA clones in your preferred vector: TMEM208 (NM_014187)
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Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TMEM208
Primer
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OriGene qPCR primer pairs and template standards for TMEM208
OriGene qSTAR qPCR primer pairs in human, mouse for TMEM208
Pre-validated RT2 qPCR Primer Assay in human, mouse, rat TMEM208
  QuantiTect SYBR Green Assays in human, mouse, rat TMEM208
  QuantiFast Probe-based Assays in human, mouse, rat TMEM208

Additional mRNA sequence: 

AF161519.1 BC003080.2 BC013412.2 

12 DOTS entries:

DT.95167565  DT.443510  DT.100787833  DT.100039252  DT.120726286  DT.97760072  DT.75103285  DT.92432211 
DT.120726243  DT.120726264  DT.429201  DT.95167567 

Selected AceView cDNA sequences (see all 200):

BI833541 BC021109 BU949228 CA843448 CR606454 BM985073 BM985098 BF311864 
BX463357 BC003080 CD106901 BU072313 BM788116 CA430745 AI569774 BE312753 
BG519812 BM782371 AI355465 CA308552 BM686765 CA310294 BU783045 AI870987 

GeneLoc Exon Structure

Selected Alternative Splicing Database (ASD) splice patterns (SP) for TMEM208 (see all 9)    About this scheme

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b · 2c · 2d · 2e ^ 3a · 3b ^ 4a · 4b · 4c · 4d ^ 5a · 5b ^ 6a · 6b · 6c · 6d · 6e
SP1:                          -     -                 -                                   -                                             
SP2:                          -                       -                                   -                                             
SP3:                          -     -                 -                                                                                 
SP4:                          -     -                 -                                   -                                             
SP5:                          -     -                 -                                                                                 


ECgene alternative splicing isoforms for TMEM208

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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TMEM208 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: CCTGGAGCAA
TMEM208 Expression
About this image


TMEM208 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 4) fully expand
 
 Brain (Nervous System)    fully expand to see all 3 entries
         Cerebral Cortex
 
 Trophoblast (Extraembryonic Tissues)
         Trophoblast Cells Trophoblast
 
 Testis (Reproductive System)
         Leydig Cells Testis Interstitium
 
 Liver (Hepatobiliary System)
         Hepatocytes Liver Lobule
TMEM208 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

TMEM208 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.433203
    Custom PCR Arrays for TMEM208
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QuantiFast Probe-based Assays in human, mouse, rat TMEM208
In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TMEM208

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals.

Orthologs for TMEM208 gene from Selected species (see all 15)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Tmem2081 , 5 transmembrane protein 2081, 5 90.51(n)1
95.57(a)1
  8 (53.04 cM)5
663201  NM_025486.21  NP_079762.11 
 1053263545 
chicken
(Gallus gallus)
Aves TMEM2081 transmembrane protein 208 74.47(n)
79.75(a)
  100857564  NM_001256963.1  NP_001243892.1 
lizard
(Anolis carolinensis)
Reptilia TMEM2086
transmembrane protein 208
74(a)
1 ↔ 1
GL343295.1(346638-354289)
African clawed frog
(Xenopus laevis)
Amphibia Xl.167972 Xenopus laevis transcribed sequence with weak similarity more 77(n)    CF520365.1 
zebrafish
(Danio rerio)
Actinopterygii zgc:770411 zgc:77041 66.67(n)
73.89(a)
  404632  NM_207100.2  NP_996983.1 
fruit fly
(Drosophila melanogaster)
Insecta CG83201 CG8320 53.7(n)
47.92(a)
  36759  NM_137228.3  NP_611072.2 
worm
(Caenorhabditis elegans)
Secernentea R05D11.56
Protein R05D11.5 (R05D11.5) mRNA, complete cds
31(a)
1 ↔ 1
I(8592092-8592926) WBGene00011033


ENSEMBL Gene Tree for TMEM208 (if available)
TreeFam Gene Tree for TMEM208 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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2 SNPs for TMEM208    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 16 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs115538011,2,4
----see VAR_0539332 mis40--------
rs178510381,2,4
----see VAR_0399582 mis40--------

HapMap Linkage Disequilibrium report for TMEM208 (67261006 - 67263182 bp)

Structural Variations
     Database of Genomic Variants (DGV) 10 variations for TMEM208:    About this table    
Variant IDTypeSubtypePubMed ID
dgv2888n71CNV Loss21882294
nsv906803CNV Loss21882294
dgv2886n71CNV Loss21882294
nsv524492CNV Loss19592680
nsv827707CNV Loss20364138
nsv457513CNV Loss19166990
dgv2885n71CNV Loss21882294
nsv524363CNV Loss19592680
nsv471092CNV Gain18288195
nsv522852CNV Gain19592680

Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing TMEM208
DNA2.0 Custom Variant and Variant Library Synthesis for TMEM208

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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Find genes that share disorders with TMEM208           About GenesLikeMe

Genetic Association Database (GAD): TMEM208

Export disorders for TMEM208 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for TMEM208 gene integrated from 10 sources:
(articles sorted by number of sources associating them with TMEM208)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PubMed id 11042152)1, 2, 3 Zhang Q.-H.... Chen Z. (Genome Res. 2000)
  2. Transmembrane protein 208: a novel ER-localized protein that regulates autophagy and ER stress. (PubMed id 23691174)1, 2 Zhao Y.... Chen Y. (PLoS ONE 2013)
  3. N-terminal acetylome analyses and functional insights of the N- terminal acetyltransferase NatB. (PubMed id 22814378)2 Van Damme P....Aldabe R. (Proc. Natl. Acad. Sci. U.S.A. 2012)
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 29100 HGNC: 25015 AceView: HSPC171 Ensembl:ENSG00000168701 euGenes: HUgn29100
ECgene: TMEM208 H-InvDB: TMEM208

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for TMEM208 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for TMEM208 gene:
Search GeneIP for patents involving TMEM208

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014

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