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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

TMEM204 Gene

protein-coding   GIFtS: 44
GCID: GC16P001579

transmembrane protein 204

(Previous name: chromosome 16 open reading frame 30 )
(Previous symbol: C16orf30)
 Explore 2 diseases affiliated with
TMEM204 via
MalaCards
our new
 Human Malady Compendium 
Biological research products
for TMEM204    

Aliases
for TMEM204 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
Transmembrane Protein 2041 2
C16orf301 2 3 5
CLP242 3 5
Claudin-Like Protein 242 3
FLJ208981
Chromosome 16 Open Reading Frame 301

External Ids:    HGNC: 141581   Entrez Gene: 796522   Ensembl: ENSG000001316347   OMIM: 6110025   UniProtKB: Q9BSN73   

Export aliases for TMEM204 gene to outside databases

Previous GC identifers: GC16P001524 GC16P001583 GC16P001509


Summaries
for TMEM204 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
Entrez Gene summary for TMEM204:
C16ORF30 plays a role in cell adhesion and cellular permeability at adherens junctions (Kearsey et al., 2004 (PubMed
15206924)).(supplied by OMIM, Mar 2008)

UniProtKB/Swiss-Prot: TM204_HUMAN, Q9BSN7
Function: Can influence paracellular permeability. Appears to be involved in cell-cell interactions through adherens




Genomic Views
for TMEM204 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000016.9  NC_018927.1  NT_010393.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the TMEM204 gene promoter:
         Bach1   Max1   Elk-1   Pax-2   E47   C/EBPalpha   CHOP-10   AREB6   c-Myc   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: TMEM204 promoter sequence
   Search SABiosciences Chromatin IP Primers for TMEM204

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TMEM204


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 16p13.3   Ensembl cytogenetic band:  16p13.3   HGNC cytogenetic band: 16p13.3

TMEM204 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TMEM204 gene location

GeneLoc information about chromosome 16         GeneLoc Exon Structure

GeneLoc location for GC16P001579:  view genomic region     (about GC identifiers)

Start:
 1,578,689 bp from pter      End:
 1,605,581 bp from pter
Size:
 26,893 bases      Orientation:
 plus strand

Proteins
for TMEM204 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: TM204_HUMAN, Q9BSN7 (See protein sequence)
Recommended Name: Transmembrane protein 204  
Size: 226 amino acids; 24540 Da
Subcellular location: Cell junction, adherens junction. Cell membrane; Multi-pass membrane protein. Note=Co-localizes
with the beta-catenin adherins
Sequence caution: Sequence=BAB14926.1; Type=Frameshift; Positions=161;
Secondary accessions: D3DU76 Q3KRC1 Q9H7G5

Explore the universe of human proteins at neXtProt for TMEM204: NX_Q9BSN7

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9BSN7

    • TMEM204 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (2 alternative transcripts): 
    NP_001243470.1  NP_078876.2  

    ENSEMBL proteins: 
     ENSP00000253934   ENSP00000454945  

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    Uscn Proteins for TMEM204

    Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886plasma membrane IEA--
    GO:0005912adherens junction IEA--
    GO:0016021integral to membrane IEA--


    TMEM204 for ontologies           About GeneDecksing



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    Protein Domains /
    Families
    for TMEM204 gene

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ProtoNet protein and cluster: Q9BSN7


    Function
    for TMEM204 gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section
    Function Summary:

         UniProtKB/Swiss-Prot: TM204_HUMAN, Q9BSN7
    Function: Can influence paracellular permeability. Appears to be involved in cell-cell interactions through adherens
    Induction: By hypoxia

    miRNA
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    Inhib. RNA
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    Gene Editing
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    Clone
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    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TMEM204 (see all 3)
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    Search LifeMap BioReagents cell lines for TMEM204

    In Situ Assay
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    Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding ----


    TMEM204 for ontologies           About GeneDecksing


    3 GenomeRNAi human phenotypes for TMEM204:
     Decreased NANOG protein expres  Decreased OCT4 protein express  Decreased POU5F1-GFP protein e 

    Animal Models:
         Mouse knock-outs for TMEM204: Tmem204tm1Lex Tmem204tm1.1Ali
         2 MGI mutant phenotypes (inferred from 3 alleles) (MGI details for Tmem204):
     immune system  muscle 

    TMEM204 for phenotypes           About GeneDecksing


    Pathways & Interactions
    for TMEM204 gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TMEM204

    Gene Ontology (GO): 4 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001945lymph vessel development IEA--
    GO:0006950response to stress IEA--
    GO:0030947regulation of vascular endothelial growth factor receptor signaling pathway IEA--
    GO:0051145smooth muscle cell differentiation IEA--


    TMEM204 for ontologies           About GeneDecksing



    Drugs & Compounds
    for TMEM204 gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for TMEM204
    Search CenterWatch for drugs/clinical trials and news about TMEM204 / TM204 

    Transcripts
    for TMEM204 gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section
    REFSEQ mRNAs for TMEM204 gene (2 alternative transcripts): 
    NM_001256541.1  NM_024600.5  

    Unigene Cluster for TMEM204:

    Transmembrane protein 204
    Hs.459652  [show with all ESTs]
    Unigene Representative Sequence: AY676494
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000253934(uc002cmc.2 uc010brr.1) ENST00000566264(uc002cmd.2)


    miRNA
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    Inhib. RNA
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    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for TMEM204 (see all 4)
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    OriGene siRNA: TMEM204
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TMEM204
    Clone
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    GenScript: all cDNA clones in your preferred vector: TMEM204 (NM_024600)
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    Primer
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      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TMEM204

    Additional cDNA sequence: 

    AK024551.1 AY358178.1 AY676494.1 BC004932.1 BC020425.2 BC105785.1 

    3 DOTS entries:

    DT.112874  DT.75100852  DT.120681645 

    24/103 AceView cDNA sequences (see all 103):

    AI338433 BM264542 AI802945 AI192951 AI356032 AI867214 BE044256 AY358178 
    BF109787 AI971809 AI240953 AI087924 BP368705 AI356013 AI739194 AI380414 
    BM311297 AI698650 BF515190 AI201822 AI686233 AW244010 BM717010 AI186838 

    GeneLoc Exon Structure


    Expression
    for TMEM204 gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    TMEM204 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: CGTGCGAGAC

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)
    About this image

    TMEM204 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    Extraembryonic MesodermExtraembryonic Capillary PlexusExtraembryonic AngioblastsEndothelium
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization
    Stem Cell Differentiation: 5 LifeMap Cells 
    NameCategory
    Sclerotome cells (Primary Cell)Bone, Cartilage, Somite
    PureStem™ progenitor EN2 (Embryonic Progenitor Cell)
    PureStem™ progenitor W10 (Embryonic Progenitor Cell)
    Fetal cardiomyocytes (20 weeks) (Primary Cell)Heart, Myocardium
    Intervertebral disc (IVD) annulus fibrosus (AF) cells (Differentiation of s...)Cartilage

    See TMEM204 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for TMEM204

    SOURCE GeneReport for Unigene cluster: Hs.459652

    UniProtKB/Swiss-Prot: TM204_HUMAN, Q9BSN7
    Tissue specificity: Highly expressed in lung, heart, kidney and placenta. Lower expression in thymus, spleen, liver,
    testis and ovary. Expressed in endothelial and restricted epithelial cell populations

        SABiosciences Custom PCR Arrays for TMEM204
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    In Situ
    Assay Products:     
         		Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TMEM204

    Orthologs
    for TMEM204 gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    This gene was present in the common ancestor of chordates.

    Orthologs for TMEM204 gene from 4/10 species (see all 10)    About this table
    Organism Taxonomic
    classification    		 Gene Description Human
    Similarity    		 Orthology
    Type    		 Details
    mouse
    (Mus musculus)    		 Mammalia Tmem2041 , 5 transmembrane protein 2041, 5 83.92(n)1
    88.05(a)1    		   17 (12.53 cM)5
    4078311  NM_001001183.11  NP_001001183.11 
     250577025 
    chicken
    (Gallus gallus)    		 Aves TMEM2041 transmembrane protein 204 78.32(n)
    81.42(a)    		   416759  XM_415054.3  XP_415054.1 
    lizard
    (Anolis carolinensis)    		 Reptilia TMEM2046
    		 --
    		 76(a)
    		 1 ↔ 1
    		 GL343649.1(63439-73829)
    zebrafish
    (Danio rerio)    		 Actinopterygii tmem2041 transmembrane protein 204 69.3(n)
    70.23(a)    		   751647  NM_001163897.1  NP_001157369.1 


    ENSEMBL Gene Tree for TMEM204 (if available)
    TreeFam Gene Tree for TMEM204 (if available) 

    Paralogs
    for TMEM204 gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    		  --

    Genomic Variants
    for TMEM204 gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 2 variations for TMEM204
         2 CNVs: 5329 4779
    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TMEM204
    DNA2.0 Custom Variant and Variant Library Synthesis for TMEM204

    Disorders / Diseases
    for TMEM204 gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    TMEM204 for disorders           About GeneDecksing

    OMIM gene information: 611002    OMIM disorders: --

    2 diseases for TMEM204:    About MalaCards
    peritonitis    hypoxia


    Export disorders for TMEM204 gene to outside databases

    Publications
    for TMEM204 gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for TMEM204 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with TMEM204)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. A novel four transmembrane spanning protein, CLP24. (PubMed id 15206924)1, 2, 9 Kearsey J.... Schweighoffer F. (2004)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    4. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2 Clark H.F.... Gray A.M. (2003)
    5. Sequence, structure and pathology of the fully annotated terminal 2 Mb of the short arm of human chromosome 16. (PubMed id 11157797)1, 2 Daniels R.J....Higgs D.R. (2001)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    7. NotI flanking sequences: a tool for gene discovery and verification of the human genome. (PubMed id 12136098)1 Kutsenko A.S....Zabarovsky E.R. (2002)

    External Searches for TMEM204 gene

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  
      Query String
    		PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    Genome Databases showing TMEM204 gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 79652 HGNC: 14158 AceView: C16orf30 Ensembl:ENSG00000131634 euGenes: HUgn79652
    ECgene: TMEM204 H-InvDB: TMEM204

    Other Databases showing TMEM204 gene

    (According to HUGE)
    About This Section
    		   --

    Specialized Databases showing TMEM204 gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for TMEM204 Pharmacogenomics, SNPs, Pathways

    Intellectual Property
    for TMEM204 gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    		Patent Information for TMEM204 gene:
    Search GeneIP for patents involving TMEM204

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    Products
    for TMEM204 gene

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    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     
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