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Aliases for TMEM201 Gene

Aliases for TMEM201 Gene

  • Transmembrane Protein 201 2 3 5
  • Spindle-Associated Membrane Protein 1 3 4
  • SAMP1 3 4
  • NET5 3 4
  • Spindle Associated Membrane Protein 1 2
  • RP13-15M17.2 3
  • Ima1 3

External Ids for TMEM201 Gene

Previous GeneCards Identifiers for TMEM201 Gene

  • GC01P009572
  • GC01P008799

Summaries for TMEM201 Gene

GeneCards Summary for TMEM201 Gene

TMEM201 (Transmembrane Protein 201) is a Protein Coding gene. Diseases associated with TMEM201 include Ileitis. GO annotations related to this gene include actin filament binding and lamin binding.

UniProtKB/Swiss-Prot for TMEM201 Gene

  • Isoform 2: May define a distinct membrane domain in the vicinity of the mitotic spindle.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM201 Gene

Genomics for TMEM201 Gene

Regulatory Elements for TMEM201 Gene

Enhancers for TMEM201 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F009555 0.9 ENCODE 11.9 -33.1 -33108 0.9 KLF17 ARID4B PTRF RAD21 RARA YY1 ZNF366 ZNF143 FOS CEBPB TMEM201 SLC25A33 RPL9P11
GH01F009625 1.8 FANTOM5 Ensembl ENCODE 5.8 +40.0 40020 6.3 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 ZNF207 PIK3CD PIK3CD-AS2 SLC25A33 MIR34A TMEM201 LOC105376712
GH01F009537 1.1 ENCODE 6.3 -49.4 -49421 4.5 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 TMEM201 SLC25A33 LOC105376706
GH01F009561 1.1 Ensembl ENCODE 5.3 -27.2 -27204 1.2 HDAC1 INSM2 PTRF FEZF1 ZNF766 ZNF366 KLF7 CEBPB ZEB2 CREB3 GPR157 TMEM201 RPL9P11 SLC25A33
GH01F009592 1 ENCODE 5.3 +5.1 5115 3.7 HDGF PKNOX1 ARID4B YBX1 GLIS2 ZNF207 KLF13 NFYC JUNB MXD4 TMEM201 LOC105376712
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TMEM201 on UCSC Golden Path with GeneCards custom track

Promoters for TMEM201 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000530316 147 1601 SIN3A ELK1 ZNF143 ZNF207 KLF13 SP3 SP5 NFYC CREB3 CTCF

Genomic Location for TMEM201 Gene

Chromosome:
1
Start:
9,588,853 bp from pter
End:
9,614,877 bp from pter
Size:
26,025 bases
Orientation:
Plus strand

Genomic View for TMEM201 Gene

Genes around TMEM201 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM201 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM201 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM201 Gene

Proteins for TMEM201 Gene

  • Protein details for TMEM201 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5SNT2-TM201_HUMAN
    Recommended name:
    Transmembrane protein 201
    Protein Accession:
    Q5SNT2
    Secondary Accessions:
    • B9EH90
    • Q5SNT3

    Protein attributes for TMEM201 Gene

    Size:
    666 amino acids
    Molecular mass:
    72236 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for TMEM201 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TMEM201 Gene

Post-translational modifications for TMEM201 Gene

  • Ubiquitination at Lys 133 and Lys 192
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for TMEM201 Gene

Domains & Families for TMEM201 Gene

Protein Domains for TMEM201 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TMEM201 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TMEM201: view

No data available for Gene Families and UniProtKB/Swiss-Prot for TMEM201 Gene

Function for TMEM201 Gene

Molecular function for TMEM201 Gene

UniProtKB/Swiss-Prot Function:
Isoform 2: May define a distinct membrane domain in the vicinity of the mitotic spindle.

Gene Ontology (GO) - Molecular Function for TMEM201 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005521 lamin binding IBA --
GO:0051015 actin filament binding IEA,IBA --
genes like me logo Genes that share ontologies with TMEM201: view
genes like me logo Genes that share phenotypes with TMEM201: view

Animal Model Products

  • Taconic Biosciences Mouse Models for TMEM201

miRNA for TMEM201 Gene

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TMEM201 Gene

Localization for TMEM201 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TMEM201 Gene

Isoform 2: Nucleus inner membrane; Multi-pass membrane protein. Note=The C-terminal of isoform 2 is located on the nucleoplasmic side. During interphase, isoform 2 is distributed in the inner nuclear membrane and during mitosis, it is found in the ER but it also localizes to the polar regions of the mitotic spindle.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TMEM201 gene
Compartment Confidence
nucleus 4
plasma membrane 3
cytoskeleton 3
extracellular 1

Gene Ontology (GO) - Cellular Components for TMEM201 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005637 nuclear inner membrane IEA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
GO:0031965 nuclear membrane IEA,IBA --
genes like me logo Genes that share ontologies with TMEM201: view

Pathways & Interactions for TMEM201 Gene

SuperPathways for TMEM201 Gene

No Data Available

Interacting Proteins for TMEM201 Gene

STRING Interaction Network Preview (showing 5 interactants - click image to see 10)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000344503%0d%0a9606.ENSP00000344818%0d%0a9606.ENSP00000376076%0d%0a9606.ENSP00000222005%0d%0a9606.ENSP00000222005%0d%0a9606.ENSP00000371278%0d%0a
Selected Interacting proteins: ENSP00000344503 Q5SNT2-TM201_HUMAN for TMEM201 Gene via STRING IID

Gene Ontology (GO) - Biological Process for TMEM201 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007097 nuclear migration IEA --
GO:0010761 fibroblast migration IEA --
GO:0030473 nuclear migration along microtubule IBA --
genes like me logo Genes that share ontologies with TMEM201: view

No data available for Pathways by source and SIGNOR curated interactions for TMEM201 Gene

Transcripts for TMEM201 Gene

Unigene Clusters for TMEM201 Gene

Transmembrane protein 201:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM201 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b · 5c ^ 6a · 6b · 6c ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12 ^ 13a · 13b ^ 14a · 14b · 14c
SP1: - - - -
SP2:
SP3: -
SP4:
SP5: - -
SP6: - -
SP7:
SP8:
SP9:

Relevant External Links for TMEM201 Gene

GeneLoc Exon Structure for
TMEM201
ECgene alternative splicing isoforms for
TMEM201

Expression for TMEM201 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TMEM201 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TMEM201 Gene

This gene is overexpressed in Muscle - Skeletal (x6.0).

Protein differential expression in normal tissues from HIPED for TMEM201 Gene

This gene is overexpressed in Nasal epithelium (24.5), Serum (12.6), Retina (8.7), and Adrenal (7.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for TMEM201 Gene



Protein tissue co-expression partners for TMEM201 Gene

NURSA nuclear receptor signaling pathways regulating expression of TMEM201 Gene:

TMEM201

SOURCE GeneReport for Unigene cluster for TMEM201 Gene:

Hs.632365
genes like me logo Genes that share expression patterns with TMEM201: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for TMEM201 Gene

Orthologs for TMEM201 Gene

This gene was present in the common ancestor of animals.

Orthologs for TMEM201 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TMEM201 34
  • 95.94 (n)
cow
(Bos Taurus)
Mammalia TMEM201 34 35
  • 88.89 (n)
dog
(Canis familiaris)
Mammalia TMEM201 34 35
  • 84.51 (n)
mouse
(Mus musculus)
Mammalia Tmem201 34 16 35
  • 83.41 (n)
rat
(Rattus norvegicus)
Mammalia Tmem201 34
  • 82.55 (n)
oppossum
(Monodelphis domestica)
Mammalia TMEM201 35
  • 73 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TMEM201 35
  • 73 (a)
OneToOne
chicken
(Gallus gallus)
Aves TMEM201 35
  • 67 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TMEM201 35
  • 62 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii tmem201 34 35
  • 58.53 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG7744 35
  • 17 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea samp-1 35
  • 19 (a)
OneToOne
Species where no ortholog for TMEM201 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for TMEM201 Gene

ENSEMBL:
Gene Tree for TMEM201 (if available)
TreeFam:
Gene Tree for TMEM201 (if available)

Paralogs for TMEM201 Gene

No data available for Paralogs for TMEM201 Gene

Variants for TMEM201 Gene

Sequence variations from dbSNP and Humsavar for TMEM201 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs11121448 -- 9,591,623(+) CGCCC(C/T)GCCTC intron-variant
rs11121450 -- 9,613,643(+) CTCAG(A/C)GCTCC downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime
rs11121451 -- 9,613,785(+) GAATG(C/T)GGAGC upstream-variant-2KB, utr-variant-3-prime
rs11121452 -- 9,614,114(+) CCCTC(C/G)GCTGT upstream-variant-2KB, utr-variant-3-prime
rs111241454 -- 9,598,199(+) CAGAA(C/T)CTTGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM201 Gene

Variant ID Type Subtype PubMed ID
nsv545363 CNV loss 21841781
nsv508847 CNV insertion 20534489
nsv2187 CNV insertion 18451855
nsv1118098 CNV deletion 24896259
nsv1013224 CNV gain 25217958
esv2743619 CNV deletion 23290073

Variation tolerance for TMEM201 Gene

Residual Variation Intolerance Score: 32% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.32; 70.61% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TMEM201 Gene

Human Gene Mutation Database (HGMD)
TMEM201
SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM201

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TMEM201 Gene

Disorders for TMEM201 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TMEM201 Gene - From: DISEASES

Disorder Aliases PubMed IDs
ileitis
  • crohn's ileitis
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for TMEM201

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMEM201
genes like me logo Genes that share disorders with TMEM201: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TMEM201 Gene

Publications for TMEM201 Gene

  1. An integral protein of the inner nuclear membrane localizes to the mitotic spindle in mammalian cells. (PMID: 19494128) Buch C. … Hallberg E. (J. Cell Sci. 2009) 2 3 4 64
  2. A transmembrane inner nuclear membrane protein in the mitotic spindle. (PMID: 21327071) Figueroa R. … Hallberg E. (Nucleus 2010) 2 3 64
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  4. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 64
  5. Probing nuclear pore complex architecture with proximity-dependent biotinylation. (PMID: 24927568) Kim D.I. … Roux K.J. (Proc. Natl. Acad. Sci. U.S.A. 2014) 3 64

Products for TMEM201 Gene

Sources for TMEM201 Gene

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