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Aliases for TMEM200B Gene

Aliases for TMEM200B Gene

  • Transmembrane Protein 200B 2 3
  • Two Transmembrane Domain-Containing Family Member B 3 4
  • Transmembrane Protein TTMA 3 4
  • TTMB 3 4
  • Two Transmembrane B 3

External Ids for TMEM200B Gene

Summaries for TMEM200B Gene

GeneCards Summary for TMEM200B Gene

TMEM200B (Transmembrane Protein 200B) is a Protein Coding gene. An important paralog of this gene is TMEM200A.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM200B Gene

Genomics for TMEM200B Gene

Genomic Location for TMEM200B Gene

Start:
29,119,425 bp from pter
End:
29,123,935 bp from pter
Size:
4,511 bases
Orientation:
Minus strand

Genomic View for TMEM200B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TMEM200B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM200B Gene

Regulatory Elements for TMEM200B Gene

Proteins for TMEM200B Gene

  • Protein details for TMEM200B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q69YZ2-T200B_HUMAN
    Recommended name:
    Transmembrane protein 200B
    Protein Accession:
    Q69YZ2
    Secondary Accessions:
    • Q6P2G8
    • Q6P2Q5

    Protein attributes for TMEM200B Gene

    Size:
    307 amino acids
    Molecular mass:
    32750 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TMEM200B Gene

Proteomics data for TMEM200B Gene at MOPED

Post-translational modifications for TMEM200B Gene

  • Modification sites at PhosphoSitePlus
  • Glycosylation at Asn88

Other Protein References for TMEM200B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TMEM200B Gene

Domains for TMEM200B Gene

Protein Domains for TMEM200B Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

T200B_HUMAN
Family:
  • Belongs to the TMEM200 family.:
    • Q69YZ2
genes like me logo Genes that share domains with TMEM200B: view

No data available for Gene Families for TMEM200B Gene

Function for TMEM200B Gene

miRNA for TMEM200B Gene

miRTarBase miRNAs that target TMEM200B

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for TMEM200B Gene

Localization for TMEM200B Gene

Subcellular locations from UniProtKB/Swiss-Prot for TMEM200B Gene

Membrane; Multi-pass membrane protein.

Gene Ontology (GO) - Cellular Components for TMEM200B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TMEM200B: view

Pathways for TMEM200B Gene

SuperPathways for TMEM200B Gene

No Data Available

Interacting Proteins for TMEM200B Gene

Gene Ontology (GO) - Biological Process for TMEM200B Gene

None

No data available for Pathways by source for TMEM200B Gene

Transcripts for TMEM200B Gene

Unigene Clusters for TMEM200B Gene

Transmembrane protein 200B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM200B Gene

No ASD Table

Relevant External Links for TMEM200B Gene

GeneLoc Exon Structure for
TMEM200B
ECgene alternative splicing isoforms for
TMEM200B

Expression for TMEM200B Gene

mRNA expression in normal human tissues for TMEM200B Gene

mRNA differential expression in normal tissues according to GTEx for TMEM200B Gene

This gene is overexpressed in Uterus (5.0).

SOURCE GeneReport for Unigene cluster for TMEM200B Gene Hs.712722

genes like me logo Genes that share expressions with TMEM200B: view

Orthologs for TMEM200B Gene

This gene was present in the common ancestor of chordates.

Orthologs for TMEM200B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TMEM200B 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TMEM200B 36
  • 90.88 (n)
  • 93.49 (a)
TMEM200B 37
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TMEM200B 36
  • 92.51 (n)
  • 95.11 (a)
TMEM200B 37
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tmem200b 36
  • 82.16 (n)
  • 88.38 (a)
Tmem200b 16
Tmem200b 37
  • 88 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TMEM200B 37
  • 58 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tmem200b 36
  • 82.86 (n)
  • 89.44 (a)
chicken
(Gallus gallus)
Aves TMEM200B 37
  • 34 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TMEM200B 37
  • 36 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii TMEM200B 37
  • 21 (a)
OneToOne
Species with no ortholog for TMEM200B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TMEM200B Gene

ENSEMBL:
Gene Tree for TMEM200B (if available)
TreeFam:
Gene Tree for TMEM200B (if available)

Paralogs for TMEM200B Gene

Paralogs for TMEM200B Gene

genes like me logo Genes that share paralogs with TMEM200B: view

Variants for TMEM200B Gene

Sequence variations from dbSNP and Humsavar for TMEM200B Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs478102 -- 29,124,099(-) TGGGG(A/G)TGGCA upstream-variant-2KB
rs484000 -- 29,125,625(+) GCTCC(A/G)GCGTC upstream-variant-2KB
rs506807 -- 29,123,287(+) CTGCC(C/T)GACCC intron-variant, upstream-variant-2KB
rs529176 -- 29,123,062(+) CGCTT(C/T)CTAAA intron-variant, upstream-variant-2KB
rs538108 -- 29,122,125(+) TGTTC(C/T)CTGGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM200B Gene

Variant ID Type Subtype PubMed ID
nsv509091 CNV Insertion 20534489

Relevant External Links for TMEM200B Gene

HapMap Linkage Disequilibrium report
TMEM200B

Disorders for TMEM200B Gene

No disorders were found for TMEM200B Gene.

No data available for UniProtKB/Swiss-Prot for TMEM200B Gene

Publications for TMEM200B Gene

  1. Candidate psychiatric illness genes identified in patients with pericentric inversions of chromosome 18. (PMID: 15722956) Pickard B.S. … Muir W.J. (Psychiatr. Genet. 2005) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  3. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for TMEM200B Gene

  • antibodies-online peptides for TMEM200B
  • antibodies-online antibodies for TMEM200B
  • antibodies-online kits for TMEM200B

Sources for TMEM200B Gene

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