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Aliases for TMEM198B Gene

Aliases for TMEM198B Gene

  • Transmembrane Protein 198B (Pseudogene) 2 3 5
  • Transmembrane Protein 198, Pseudogene 2

External Ids for TMEM198B Gene

Previous GeneCards Identifiers for TMEM198B Gene

  • GC12P056235

Summaries for TMEM198B Gene

GeneCards Summary for TMEM198B Gene

TMEM198B (Transmembrane Protein 198B (Pseudogene)) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM198B Gene

Genomics for TMEM198B Gene

Regulatory Elements for TMEM198B Gene

Enhancers for TMEM198B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G056718 1.5 ENCODE dbSUPER 64 +893.0 892951 8.9 CREB3L1 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF416 ZNF548 ZNF263 MCM3 NEMP1 SMARCC2 BAZ2A ENSG00000257740 ANKRD52 TMEM198B ENSG00000224713 NAB2 RN7SL809P STAT2
GH12G056156 1.4 ENCODE dbSUPER 24.5 +330.3 330327 6.4 AGO1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 NFYC ZFP41 MEF2D SSRP1 BAZ2A NEMP1 TMEM198B RN7SL809P RNU6-343P CDK2 ZC3H10 STAT2 ORMDL2 CNPY2
GH12G056298 1.4 ENCODE dbSUPER 24.4 +471.2 471203 4.6 CREB3L1 AGO1 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC ZNF610 NEMP1 BAZ2A ZC3H10 CDK2 RN7SL809P ENSG00000257303 TMEM198B RPL41 RNU6-343P RBMS2
GH12G056631 1.4 ENCODE dbSUPER 23.3 +805.3 805312 6.9 MLX AGO1 ZFP64 FEZF1 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 BAZ2A NEMP1 TMEM198B ENSG00000224713 RN7SL809P RNU6-343P SMARCC2 ENSG00000257740 ARHGEF25 CDK2
GH12G055925 2 FANTOM5 Ensembl ENCODE dbSUPER 14.2 +103.7 103731 16.2 CREB3L1 DMAP1 FEZF1 YBX1 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 BAZ2A ENSG00000257740 RN7SL809P SMARCC2 TMEM198B RNU6-343P PHC1P1 CDK2 PYM1 ZC3H10
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TMEM198B on UCSC Golden Path with GeneCards custom track

Promoters for TMEM198B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000052449 492 2601 MLX CREB3L1 AGO1 DMAP1 FEZF1 YY1 ZNF143 ZNF548 SP3 NFYC

Genomic Location for TMEM198B Gene

Chromosome:
12
Start:
55,829,608 bp from pter
End:
55,836,246 bp from pter
Size:
6,639 bases
Orientation:
Plus strand

Genomic View for TMEM198B Gene

Genes around TMEM198B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM198B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM198B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM198B Gene

Proteins for TMEM198B Gene

Post-translational modifications for TMEM198B Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM198B Gene

Domains & Families for TMEM198B Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMEM198B Gene

Function for TMEM198B Gene

Phenotypes for TMEM198B Gene

GenomeRNAi human phenotypes for TMEM198B:
genes like me logo Genes that share phenotypes with TMEM198B: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM198B Gene

Localization for TMEM198B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TMEM198B Gene

Pathways & Interactions for TMEM198B Gene

SuperPathways for TMEM198B Gene

No Data Available

Interacting Proteins for TMEM198B Gene

Gene Ontology (GO) - Biological Process for TMEM198B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM198B Gene

Transcripts for TMEM198B Gene

Unigene Clusters for TMEM198B Gene

Transmembrane protein 198B, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM198B Gene

No ASD Table

Relevant External Links for TMEM198B Gene

GeneLoc Exon Structure for
TMEM198B
ECgene alternative splicing isoforms for
TMEM198B

Expression for TMEM198B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TMEM198B Gene

NURSA nuclear receptor signaling pathways regulating expression of TMEM198B Gene:

TMEM198B

SOURCE GeneReport for Unigene cluster for TMEM198B Gene:

Hs.731828
genes like me logo Genes that share expression patterns with TMEM198B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TMEM198B Gene

Orthologs for TMEM198B Gene

Evolution for TMEM198B Gene

ENSEMBL:
Gene Tree for TMEM198B (if available)
TreeFam:
Gene Tree for TMEM198B (if available)

No data available for Orthologs for TMEM198B Gene

Paralogs for TMEM198B Gene

No data available for Paralogs for TMEM198B Gene

Variants for TMEM198B Gene

Sequence variations from dbSNP and Humsavar for TMEM198B Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000205926 -- 55,833,009(+) CAGGA(A/G)CGCTG intron-variant, nc-transcript-variant
rs1000296454 -- 55,836,413(+) GAGCT(C/G)TTCAG intron-variant, nc-transcript-variant, downstream-variant-500B, utr-variant-3-prime
rs1000584101 -- 55,830,680(+) GGTGA(C/T)CCTCA nc-transcript-variant, upstream-variant-2KB
rs1000872070 -- 55,829,992(+) CTGCC(C/G/T)TGATC nc-transcript-variant, upstream-variant-2KB
rs1001283510 -- 55,829,526(+) CGCCC(A/G)GCCTG upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for TMEM198B Gene

Variant ID Type Subtype PubMed ID
nsv1138137 CNV deletion 24896259
nsv832423 CNV gain 17160897

Relevant External Links for TMEM198B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM198B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMEM198B Gene

Disorders for TMEM198B Gene

Relevant External Links for TMEM198B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMEM198B

No disorders were found for TMEM198B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM198B Gene

Publications for TMEM198B Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TMEM198B Gene

Sources for TMEM198B Gene

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