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Aliases for TMEM196 Gene

Aliases for TMEM196 Gene

  • Transmembrane Protein 196 2 3

External Ids for TMEM196 Gene

Previous GeneCards Identifiers for TMEM196 Gene

  • GC07M019726

Summaries for TMEM196 Gene

GeneCards Summary for TMEM196 Gene

TMEM196 (Transmembrane Protein 196) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM196 Gene

Genomics for TMEM196 Gene

Regulatory Elements for TMEM196 Gene

Genomic Location for TMEM196 Gene

Start:
19,719,310 bp from pter
End:
19,773,598 bp from pter
Size:
54,289 bases
Orientation:
Minus strand

Genomic View for TMEM196 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TMEM196 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM196 Gene

Proteins for TMEM196 Gene

  • Protein details for TMEM196 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5HYL7-TM196_HUMAN
    Recommended name:
    Transmembrane protein 196
    Protein Accession:
    Q5HYL7
    Secondary Accessions:
    • Q8N6I6

    Protein attributes for TMEM196 Gene

    Size:
    178 amino acids
    Molecular mass:
    19025 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BX648384; Type=Frameshift; Positions=72; Evidence={ECO:0000305};

    Alternative splice isoforms for TMEM196 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TMEM196 Gene

Proteomics data for TMEM196 Gene at MOPED

Post-translational modifications for TMEM196 Gene

No Post-translational modifications

Other Protein References for TMEM196 Gene

No data available for DME Specific Peptides for TMEM196 Gene

Domains for TMEM196 Gene

Protein Domains for TMEM196 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for TMEM196 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TMEM196: view

No data available for Gene Families and UniProtKB/Swiss-Prot for TMEM196 Gene

Function for TMEM196 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TMEM196 Gene

Localization for TMEM196 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TMEM196 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TMEM196 Gene COMPARTMENTS Subcellular localization image for TMEM196 gene
Compartment Confidence
plasma membrane 3
golgi apparatus 1
nucleus 1

Gene Ontology (GO) - Cellular Components for TMEM196 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TMEM196: view

Pathways for TMEM196 Gene

SuperPathways for TMEM196 Gene

No Data Available

Interacting Proteins for TMEM196 Gene

Gene Ontology (GO) - Biological Process for TMEM196 Gene

None

No data available for Pathways by source for TMEM196 Gene

Transcripts for TMEM196 Gene

Unigene Clusters for TMEM196 Gene

Transmembrane protein 196:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM196 Gene

ExUns: 1 ^ 2 ^ 3a · 3b
SP1:
SP2:
SP3: -

Relevant External Links for TMEM196 Gene

GeneLoc Exon Structure for
TMEM196
ECgene alternative splicing isoforms for
TMEM196

Expression for TMEM196 Gene

mRNA expression in normal human tissues for TMEM196 Gene

mRNA differential expression in normal tissues according to GTEx for TMEM196 Gene

This gene is overexpressed in Brain - Hypothalamus (7.9), Brain - Anterior cingulate cortex (BA24) (6.7), Brain - Frontal Cortex (BA9) (5.6), Brain - Cortex (5.4), Brain - Caudate (basal ganglia) (4.4), Brain - Putamen (basal ganglia) (4.4), and Pituitary (4.3).

SOURCE GeneReport for Unigene cluster for TMEM196 Gene Hs.487670

genes like me logo Genes that share expressions with TMEM196: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for TMEM196 Gene

Orthologs for TMEM196 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TMEM196 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TMEM196 35
  • 98.45 (n)
  • 99.42 (a)
TMEM196 36
  • 88 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TMEM196 35
  • 94.19 (n)
  • 98.26 (a)
TMEM196 36
  • 84 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TMEM196 35
  • 93.22 (n)
  • 99.42 (a)
TMEM196 36
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tmem196 35
  • 91.28 (n)
  • 97.09 (a)
Tmem196 16
Tmem196 36
  • 95 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TMEM196 36
  • 94 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TMEM196 36
  • 84 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tmem196 35
  • 91.28 (n)
  • 97.67 (a)
chicken
(Gallus gallus)
Aves TMEM196 35
  • 83.53 (n)
  • 92.44 (a)
TMEM196 36
  • 84 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TMEM196 36
  • 90 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tmem196 35
  • 76.02 (n)
  • 80.7 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC798466 35
  • 68.42 (n)
  • 70.76 (a)
TMEM196 (1 of 2) 36
  • 65 (a)
OneToMany
tmem196b 36
  • 57 (a)
OneToMany
Species with no ortholog for TMEM196:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TMEM196 Gene

ENSEMBL:
Gene Tree for TMEM196 (if available)
TreeFam:
Gene Tree for TMEM196 (if available)

Paralogs for TMEM196 Gene

Pseudogenes.org Pseudogenes for TMEM196 Gene

genes like me logo Genes that share paralogs with TMEM196: view

No data available for Paralogs for TMEM196 Gene

Variants for TMEM196 Gene

Sequence variations from dbSNP and Humsavar for TMEM196 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs12452 -- 19,719,472(-) ATTGG(G/T)CTCGC utr-variant-3-prime
rs207980 -- 19,720,256(+) CACCA(A/C)ACAAG utr-variant-3-prime
rs207981 -- 19,720,357(+) AAGAC(C/T)TTCAA utr-variant-3-prime
rs207982 -- 19,732,350(+) tgggc(A/G)gatca intron-variant
rs207983 -- 19,732,416(+) aaaaa(C/T)acaaa intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM196 Gene

Variant ID Type Subtype PubMed ID
nsv524807 CNV Gain 19592680
nsv830918 CNV Loss 17160897
esv2734097 CNV Deletion 23290073

Relevant External Links for TMEM196 Gene

HapMap Linkage Disequilibrium report
TMEM196

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TMEM196 Gene

Disorders for TMEM196 Gene

Relevant External Links for TMEM196

Genetic Association Database (GAD)
TMEM196
genes like me logo Genes that share disorders with TMEM196: view

No data available for UniProtKB/Swiss-Prot for TMEM196 Gene

Publications for TMEM196 Gene

  1. A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study. (PMID: 17903292) Hwang S.J. … Fox C.S. (BMC Med. Genet. 2007) 3 48
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  3. Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study. (PMID: 17903295) Lunetta K.L. … Murabito J.M. (BMC Med. Genet. 2007) 48
  4. Framingham Heart Study genome-wide association: results for pulmonary function measures. (PMID: 17903307) Wilk J.B. … O'Connor G.T. (BMC Med. Genet. 2007) 48
  5. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 4

Products for TMEM196 Gene

Sources for TMEM196 Gene

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