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Aliases for TMEM189 Gene

Aliases for TMEM189 Gene

  • Transmembrane Protein 189 2 3 5
  • KUA 3 4

External Ids for TMEM189 Gene

Previous GeneCards Identifiers for TMEM189 Gene

  • GC20M048134
  • GC20M048740
  • GC20M045488
  • GC20M048699

Summaries for TMEM189 Gene

Entrez Gene Summary for TMEM189 Gene

  • Co-transcription of this gene and the neighboring downstream gene (ubiquitin-conjugating enzyme E2 variant 1) generates a rare read-through transcript, which encodes a fusion protein comprised of sequence sharing identity with each individual gene product. The protein encoded by this individual gene lacks a UEV1 domain but includes three transmembrane regions. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jun 2009]

GeneCards Summary for TMEM189 Gene

TMEM189 (Transmembrane Protein 189) is a Protein Coding gene. Diseases associated with TMEM189 include Timothy Grass Allergy and Fish Allergy. GO annotations related to this gene include ubiquitin protein ligase binding and ubiquitin-like protein transferase activity. An important paralog of this gene is TMEM189-UBE2V1.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM189 Gene

Genomics for TMEM189 Gene

Regulatory Elements for TMEM189 Gene

Enhancers for TMEM189 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F050258 0.9 FANTOM5 Ensembl ENCODE 8.3 -106.7 -106677 4.3 HDGF PKNOX1 ARNT YBX1 ZNF48 ZNF207 FOS ZNF263 REST SMARCB1 CEBPB ENSG00000232043 SNAI1 LINC01273 DPM1 MIR645 SNORD12B PSMD10P1 TMEM189 SLC9A8
GH20F050140 1.4 FANTOM5 Ensembl ENCODE 7.4 +6.1 6079 14.1 HDGF PKNOX1 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 YBX1 YY1 SNAI1 SLC9A8 LINC01273 B4GALT5 PTPN1 CEBPB DPM1 PSMD10P1 TMEM189 RNF114
GH20F050218 1.4 FANTOM5 Ensembl ENCODE 6.2 -69.4 -69403 10.0 HDGF PKNOX1 ZFP64 SIN3A YBX1 YY1 ZNF143 ZNF207 FOS TBX21 SLC9A8 CEBPB SNAI1 LINC01273 PSMD10P1 PTPN1 DPM1 RNF114 ENSG00000232043 MIR645
GH20F050455 1.4 FANTOM5 Ensembl ENCODE 6.2 -303.1 -303092 3.0 ATF1 MLX ZFP64 ARID4B DMAP1 ZNF48 SLC30A9 ZNF207 SP5 MXD4 SNAI1 CEBPB PSMD10P1 PTPN1 ENSG00000232043 TMEM189 COX6CP2 RN7SL636P
GH20F050265 1.2 FANTOM5 Ensembl ENCODE 5.8 -123.1 -123081 22.6 HDGF PKNOX1 ARNT MLX CREB3L1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 CEBPB SLC9A8 PTPN1 SNAI1 LINC01270 DPM1 ENSG00000232043 PSMD10P1 LINC01272 ENSG00000199490
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TMEM189 on UCSC Golden Path with GeneCards custom track

Promoters for TMEM189 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000402528 398 2001 HDGF PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 YBX1 ZNF143 ZNF207

Genomic Location for TMEM189 Gene

Chromosome:
20
Start:
50,118,254 bp from pter
End:
50,153,798 bp from pter
Size:
35,545 bases
Orientation:
Minus strand

Genomic View for TMEM189 Gene

Genes around TMEM189 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM189 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM189 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM189 Gene

Proteins for TMEM189 Gene

  • Protein details for TMEM189 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A5PLL7-TM189_HUMAN
    Recommended name:
    Transmembrane protein 189
    Protein Accession:
    A5PLL7

    Protein attributes for TMEM189 Gene

    Size:
    270 amino acids
    Molecular mass:
    31135 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • TMEM189/KUA and UBE2V1/UEV1 are adjacent genes which can produce independent proteins and can also be fused to form a TMEM189-UBE2V1 hybrid protein.

    Alternative splice isoforms for TMEM189 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TMEM189 Gene

Post-translational modifications for TMEM189 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TMEM189 Gene

No data available for DME Specific Peptides for TMEM189 Gene

Domains & Families for TMEM189 Gene

Protein Domains for TMEM189 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TMEM189: view

No data available for Gene Families and UniProtKB/Swiss-Prot for TMEM189 Gene

Function for TMEM189 Gene

Gene Ontology (GO) - Molecular Function for TMEM189 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0031625 ubiquitin protein ligase binding IBA --
GO:0061630 ubiquitin protein ligase activity IBA --
genes like me logo Genes that share ontologies with TMEM189: view
genes like me logo Genes that share phenotypes with TMEM189: view

Animal Models for TMEM189 Gene

MGI Knock Outs for TMEM189:

Animal Model Products

miRNA for TMEM189 Gene

miRTarBase miRNAs that target TMEM189

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for TMEM189 Gene

Localization for TMEM189 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TMEM189 Gene

Endoplasmic reticulum membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TMEM189 Gene COMPARTMENTS Subcellular localization image for TMEM189 gene
Compartment Confidence
endoplasmic reticulum 3
endosome 1
nucleus 1

Gene Ontology (GO) - Cellular Components for TMEM189 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IBA --
GO:0005783 endoplasmic reticulum IEA --
GO:0005789 endoplasmic reticulum membrane IEA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TMEM189: view

Pathways & Interactions for TMEM189 Gene

SuperPathways for TMEM189 Gene

No Data Available

Interacting Proteins for TMEM189 Gene

Selected Interacting proteins: A5PLL7-TM189_HUMAN for TMEM189 Gene via IID

Gene Ontology (GO) - Biological Process for TMEM189 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016567 protein ubiquitination IEA --
genes like me logo Genes that share ontologies with TMEM189: view

No data available for Pathways by source and SIGNOR curated interactions for TMEM189 Gene

Transcripts for TMEM189 Gene

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM189 Gene

No ASD Table

Relevant External Links for TMEM189 Gene

GeneLoc Exon Structure for
TMEM189
ECgene alternative splicing isoforms for
TMEM189

Expression for TMEM189 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TMEM189 Gene

Protein differential expression in normal tissues from HIPED for TMEM189 Gene

This gene is overexpressed in Bone (44.6) and Placenta (17.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for TMEM189 Gene



Protein tissue co-expression partners for TMEM189 Gene

NURSA nuclear receptor signaling pathways regulating expression of TMEM189 Gene:

TMEM189
genes like me logo Genes that share expression patterns with TMEM189: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TMEM189 Gene

Orthologs for TMEM189 Gene

This gene was present in the common ancestor of animals.

Orthologs for TMEM189 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TMEM189 34 35
  • 99.63 (n)
dog
(Canis familiaris)
Mammalia TMEM189 34
  • 92.59 (n)
-- 35
  • 83 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm20431 35
  • 92 (a)
OneToMany
Tmem189 34 16
  • 88.52 (n)
cow
(Bos Taurus)
Mammalia TMEM189 34 35
  • 90.74 (n)
rat
(Rattus norvegicus)
Mammalia Tmem189 34
  • 89.51 (n)
oppossum
(Monodelphis domestica)
Mammalia TMEM189 35
  • 66 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia TMEM189 35
  • 63 (a)
OneToMany
chicken
(Gallus gallus)
Aves TMEM189 34 35
  • 72.4 (n)
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 51 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia tmem189 34
  • 70.16 (n)
zebrafish
(Danio rerio)
Actinopterygii tmem189 34 35
  • 69.42 (n)
fruit fly
(Drosophila melanogaster)
Insecta Kua 35
  • 43 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea Y53C10A.5 35
  • 37 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 47 (a)
OneToMany
Species where no ortholog for TMEM189 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TMEM189 Gene

ENSEMBL:
Gene Tree for TMEM189 (if available)
TreeFam:
Gene Tree for TMEM189 (if available)

Paralogs for TMEM189 Gene

Paralogs for TMEM189 Gene

(2) SIMAP similar genes for TMEM189 Gene using alignment to 6 proteins:

genes like me logo Genes that share paralogs with TMEM189: view

Variants for TMEM189 Gene

Sequence variations from dbSNP and Humsavar for TMEM189 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs10268 -- 50,124,580(+) GGCTG(A/G)GGCTG intron-variant, nc-transcript-variant, utr-variant-3-prime
rs10574784 -- 50,143,702(+) TTTTC(-/TT)TTTTT intron-variant
rs111227301 -- 50,138,477(+) CCACG(A/G)CACAG intron-variant
rs111297255 -- 50,149,360(+) AGGAC(C/G/T)GTGAG intron-variant
rs111312738 -- 50,153,045(+) TAGGG(-/CA)CAGAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM189 Gene

Variant ID Type Subtype PubMed ID
esv34129 CNV loss 18971310
nsv1061982 CNV loss 25217958
nsv1072546 CNV deletion 25765185
nsv474090 CNV novel sequence insertion 20440878
nsv834000 CNV gain+loss 17160897

Variation tolerance for TMEM189 Gene

Residual Variation Intolerance Score: 48.4% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TMEM189 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM189

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TMEM189 Gene

Disorders for TMEM189 Gene

MalaCards: The human disease database

(2) MalaCards diseases for TMEM189 Gene - From: DISEASES

Disorder Aliases PubMed IDs
timothy grass allergy
fish allergy
  • allergy to fish
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for TMEM189

Human Genome Epidemiology (HuGE) Navigator
TMEM189
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMEM189
genes like me logo Genes that share disorders with TMEM189: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TMEM189 Gene

Publications for TMEM189 Gene

  1. Fusion of the human gene for the polyubiquitination coeffector UEV1 with Kua, a newly identified gene. (PMID: 11076860) Thomson T.M. … Guigo R. (Genome Res. 2000) 2 3 4 22 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. Molecular basis of T cell-mediated recognition of pancreatic cancer cells. (PMID: 11280764) Ito M. … Itoh K. (Cancer Res. 2001) 3 4 64
  4. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 64
  5. A census of human soluble protein complexes. (PMID: 22939629) Havugimana P.C. … Emili A. (Cell 2012) 3 64

Products for TMEM189 Gene

Sources for TMEM189 Gene

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