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Aliases for TMEM187 Gene

Aliases for TMEM187 Gene

  • Transmembrane Protein 187 2 3
  • DXS9878E 3 4 6
  • CXorf12 3 4 6
  • ITBA1 3 4
  • Chromosome X Open Reading Frame 12 2
  • Protein ITBA1 4
  • ITBA1 Gene 6

External Ids for TMEM187 Gene

Previous Symbols for TMEM187 Gene

  • CXorf12

Summaries for TMEM187 Gene

Entrez Gene Summary for TMEM187 Gene

  • This gene consists of two exons and encodes a multi-pass membrane protein. An alternatively spliced transcript variant encoding the same protein has been found, but its biological validity is not determined. [provided by RefSeq, May 2010]

GeneCards Summary for TMEM187 Gene

TMEM187 (Transmembrane Protein 187) is a Protein Coding gene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM187 Gene

Genomics for TMEM187 Gene

Genomic Location for TMEM187 Gene

Start:
153,972,327 bp from pter
End:
153,983,195 bp from pter
Size:
10,869 bases
Orientation:
Plus strand

Genomic View for TMEM187 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TMEM187 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM187 Gene

Regulatory Elements for TMEM187 Gene

Transcription factor binding sites by QIAGEN in the TMEM187 gene promoter:

Proteins for TMEM187 Gene

  • Protein details for TMEM187 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q14656-TM187_HUMAN
    Recommended name:
    Transmembrane protein 187
    Protein Accession:
    Q14656
    Secondary Accessions:
    • B2RC47
    • Q6IAV7

    Protein attributes for TMEM187 Gene

    Size:
    261 amino acids
    Molecular mass:
    29148 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TMEM187 Gene

Proteomics data for TMEM187 Gene at MOPED

Post-translational modifications for TMEM187 Gene

No Post-translational modifications

Other Protein References for TMEM187 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TMEM187 Gene

Domains for TMEM187 Gene

Protein Domains for TMEM187 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with TMEM187: view

No data available for Gene Families and UniProtKB/Swiss-Prot for TMEM187 Gene

Function for TMEM187 Gene

Gene Ontology (GO) - Molecular Function for TMEM187 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with TMEM187: view

miRNA for TMEM187 Gene

miRTarBase miRNAs that target TMEM187

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for TMEM187 Gene

Localization for TMEM187 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TMEM187 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TMEM187 Gene COMPARTMENTS Subcellular localization image for TMEM187 gene
Compartment Confidence
plasma membrane 3
endoplasmic reticulum 1
golgi apparatus 1
nucleus 1

Gene Ontology (GO) - Cellular Components for TMEM187 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
GO:0030133 transport vesicle IDA --
genes like me logo Genes that share ontologies with TMEM187: view

Pathways for TMEM187 Gene

SuperPathways for TMEM187 Gene

No Data Available

Interacting Proteins for TMEM187 Gene

Selected Interacting proteins: Q14656-TM187_HUMAN for TMEM187 Gene via I2D

Symbol External ID(s) Details
PLSCR1

Gene Ontology (GO) - Biological Process for TMEM187 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with TMEM187: view

No data available for Pathways by source for TMEM187 Gene

Transcripts for TMEM187 Gene

mRNA/cDNA for TMEM187 Gene

Unigene Clusters for TMEM187 Gene

Transmembrane protein 187:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM187 Gene

No ASD Table

Relevant External Links for TMEM187 Gene

GeneLoc Exon Structure for
TMEM187
ECgene alternative splicing isoforms for
TMEM187

Expression for TMEM187 Gene

mRNA expression in normal human tissues for TMEM187 Gene

SOURCE GeneReport for Unigene cluster for TMEM187 Gene Hs.23119

mRNA Expression by UniProt/SwissProt for TMEM187 Gene

Q14656-TM187_HUMAN
Tissue specificity: Ubiquitous
genes like me logo Genes that share expressions with TMEM187: view

Orthologs for TMEM187 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TMEM187 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TMEM187 36
  • 98.72 (n)
  • 98.85 (a)
TMEM187 37
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TMEM187 36
  • 76.97 (n)
  • 73.49 (a)
TMEM187 37
  • 71 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TMEM187 36
  • 76.65 (n)
  • 74.32 (a)
TMEM187 37
  • 72 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TMEM187 37
  • 56 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TMEM187 37
  • 58 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tmem187 36
  • 57.87 (n)
  • 54 (a)
zebrafish
(Danio rerio)
Actinopterygii tmem187 36
  • 59.08 (n)
  • 54.88 (a)
tmem187 37
  • 52 (a)
OneToOne
Species with no ortholog for TMEM187:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TMEM187 Gene

ENSEMBL:
Gene Tree for TMEM187 (if available)
TreeFam:
Gene Tree for TMEM187 (if available)

Paralogs for TMEM187 Gene

No data available for Paralogs for TMEM187 Gene

Variants for TMEM187 Gene

Sequence variations from dbSNP and Humsavar for TMEM187 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs2266887 -- 153,974,136(+) TACAT(G/T)GTCAC intron-variant
rs2266888 -- 153,974,269(+) TCTCC(A/G)CCCTG intron-variant
rs2266889 -- 153,974,704(+) AGTTC(A/G)GGTGC intron-variant
rs4898374 -- 153,975,935(+) ccacc(G/T)cgctg intron-variant
rs5945172 -- 153,977,864(+) GAGGC(A/G)AGATC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM187 Gene

Variant ID Type Subtype PubMed ID
esv33199 CNV Gain+Loss 17666407
nsv469867 CNV Complex 16826518
esv33784 CNV Gain+Loss 17666407
nsv519506 CNV Gain 19592680

Relevant External Links for TMEM187 Gene

HapMap Linkage Disequilibrium report
TMEM187
Human Gene Mutation Database (HGMD)
TMEM187
Locus Specific Mutation Databases (LSDB)
TMEM187

Disorders for TMEM187 Gene

No disorders were found for TMEM187 Gene.

No data available for UniProtKB/Swiss-Prot for TMEM187 Gene

Publications for TMEM187 Gene

  1. The complete sequence of the host cell factor 1 (HCFC1) gene and its promoter: a role for YY1 transcription factor in the regulation of its expression. (PMID: 8661027) ZoppA" M. … Vezzoni P. (Genomics 1996) 2 3
  2. Characterization and fine localization of two new genes in Xq28 using the genomic sequence/EST database screening approach. (PMID: 8786131) Faranda S. … Vezzoni P. (Genomics 1996) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions. (PMID: 17567994) Denoeud F. … Reymond A. (Genome Res. 2007) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4

Products for TMEM187 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate TMEM187
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TMEM187
    • Block miRNA regulation of TMEM187 using miScript Target Protectors

    Sources for TMEM187 Gene

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