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Aliases for TMEM178B Gene

Aliases for TMEM178B Gene

  • Transmembrane Protein 178B 2 3

External Ids for TMEM178B Gene

Previous GeneCards Identifiers for TMEM178B Gene

  • GC07P140775

Summaries for TMEM178B Gene

GeneCards Summary for TMEM178B Gene

TMEM178B (Transmembrane Protein 178B) is a Protein Coding gene. An important paralog of this gene is TMEM178A.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM178B Gene

Genomics for TMEM178B Gene

Genomic Location for TMEM178B Gene

Start:
141,074,232 bp from pter
End:
141,480,380 bp from pter
Size:
406,149 bases
Orientation:
Plus strand

Genomic View for TMEM178B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TMEM178B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM178B Gene

No data available for Regulatory Elements for TMEM178B Gene

Proteins for TMEM178B Gene

  • Protein details for TMEM178B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    H3BS89-T178B_HUMAN
    Recommended name:
    Transmembrane protein 178B
    Protein Accession:
    H3BS89
    Secondary Accessions:

    Protein attributes for TMEM178B Gene

    Size:
    294 amino acids
    Molecular mass:
    33409 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TMEM178B Gene

Proteomics data for TMEM178B Gene at MOPED

Post-translational modifications for TMEM178B Gene

  • Glycosylation at Asn148 and Asn152
  • Modification sites at PhosphoSitePlus

Other Protein References for TMEM178B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TMEM178B Gene

Domains for TMEM178B Gene

Protein Domains for TMEM178B Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

H3BS89

UniProtKB/Swiss-Prot:

T178B_HUMAN :
  • H3BS89
Family:
  • Belongs to the TMEM178 family.
genes like me logo Genes that share domains with TMEM178B: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for TMEM178B Gene

Function for TMEM178B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TMEM178B Gene

Localization for TMEM178B Gene

Subcellular locations from UniProtKB/Swiss-Prot for TMEM178B Gene

Membrane; Multi-pass membrane protein.

Gene Ontology (GO) - Cellular Components for TMEM178B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TMEM178B: view

No data available for Subcellular locations from COMPARTMENTS for TMEM178B Gene

Pathways for TMEM178B Gene

SuperPathways for TMEM178B Gene

No Data Available

Interacting Proteins for TMEM178B Gene

Gene Ontology (GO) - Biological Process for TMEM178B Gene

None

No data available for Pathways by source for TMEM178B Gene

Transcripts for TMEM178B Gene

mRNA/cDNA for TMEM178B Gene

(3) Additional mRNA sequences :
(2) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMEM178B Gene

Transmembrane protein 178B:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TMEM178B

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM178B Gene

No ASD Table

Relevant External Links for TMEM178B Gene

GeneLoc Exon Structure for
TMEM178B
ECgene alternative splicing isoforms for
TMEM178B

Expression for TMEM178B Gene

mRNA expression in normal human tissues for TMEM178B Gene

mRNA differential expression in normal tissues according to GTEx for TMEM178B Gene

This gene is overexpressed in Heart - Left Ventricle (5.5), Brain - Frontal Cortex (BA9) (4.8), Brain - Cortex (4.6), and Heart - Atrial Appendage (4.1).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for TMEM178B Gene

SOURCE GeneReport for Unigene cluster for TMEM178B Gene Hs.283851

genes like me logo Genes that share expressions with TMEM178B: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for TMEM178B Gene

Orthologs for TMEM178B Gene

This gene was present in the common ancestor of chordates.

Orthologs for TMEM178B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TMEM178B 35
  • 100 (n)
  • 100 (a)
cow
(Bos Taurus)
Mammalia -- 36
  • 98 (a)
ManyToMany
TMEM178B 35
  • 94.56 (n)
  • 99.32 (a)
dog
(Canis familiaris)
Mammalia -- 36
  • 93 (a)
ManyToMany
-- 36
  • 98 (a)
ManyToMany
TMEM178B 35
  • 96.15 (n)
  • 99.32 (a)
mouse
(Mus musculus)
Mammalia Tmem178b 35
  • 94.32 (n)
  • 98.45 (a)
Tmem178b 16
Tmem178b 36
  • 93 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 84 (a)
ManyToMany
rat
(Rattus norvegicus)
Mammalia Tmem178b 35
  • 94.44 (n)
  • 99.66 (a)
chicken
(Gallus gallus)
Aves TMEM178B 35
  • 83.9 (n)
  • 92.18 (a)
TMEM178B 36
  • 92 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TMEM178B 36
  • 85 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii AL929252.1 36
  • 69 (a)
ManyToMany
si:ch211-87j1.4 36
  • 65 (a)
ManyToMany
tmem178b 35
  • 78.34 (n)
  • 85.71 (a)
tmem178b 36
  • 86 (a)
ManyToMany
zgc:194665 36
  • 75 (a)
ManyToMany
Species with no ortholog for TMEM178B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TMEM178B Gene

ENSEMBL:
Gene Tree for TMEM178B (if available)
TreeFam:
Gene Tree for TMEM178B (if available)

Paralogs for TMEM178B Gene

Paralogs for TMEM178B Gene

Selected SIMAP similar genes for TMEM178B Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with TMEM178B: view

Variants for TMEM178B Gene

Sequence variations from dbSNP and Humsavar for TMEM178B Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs725 -- 141,197,129(-) CTATT(A/G)TTATA intron-variant
rs2334 -- 141,412,006(+) GAAAC(G/T)GTGAC intron-variant
rs118940 -- 141,293,217(+) TCATA(C/T)TGGGG intron-variant
rs216994 -- 141,260,207(+) TTGCA(A/G)TATAC intron-variant
rs216995 -- 141,261,035(+) AACCC(A/C)AGATC intron-variant

Relevant External Links for TMEM178B Gene

HapMap Linkage Disequilibrium report
TMEM178B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for TMEM178B Gene

Disorders for TMEM178B Gene

No disorders were found for TMEM178B Gene.

No data available for UniProtKB/Swiss-Prot for TMEM178B Gene

Publications for TMEM178B Gene

  1. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 3
  2. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3
  5. Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries. (PMID: 24556642) Zeng Z. … Shaffer J.R. (Caries Res. 2014) 3

Products for TMEM178B Gene

Sources for TMEM178B Gene

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