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Aliases for TMEM176A Gene

Aliases for TMEM176A Gene

  • Transmembrane Protein 176A 2 3 5
  • Hepatocellular Carcinoma-Associated Antigen 112 3 4
  • HCA112 3 4
  • Likley Ortholog Of Mouse GS188 3
  • GS188 3
  • MS4B1 3

External Ids for TMEM176A Gene

Previous GeneCards Identifiers for TMEM176A Gene

  • GC07P150128
  • GC07P150497
  • GC07P144309

Summaries for TMEM176A Gene

GeneCards Summary for TMEM176A Gene

TMEM176A (Transmembrane Protein 176A) is a Protein Coding gene. An important paralog of this gene is TMEM176B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM176A Gene

Genomics for TMEM176A Gene

Regulatory Elements for TMEM176A Gene

Promoters for TMEM176A Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around TMEM176A on UCSC Golden Path with GeneCards custom track

Genomic Location for TMEM176A Gene

Chromosome:
7
Start:
150,800,403 bp from pter
End:
150,805,120 bp from pter
Size:
4,718 bases
Orientation:
Plus strand

Genomic View for TMEM176A Gene

Genes around TMEM176A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM176A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM176A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM176A Gene

Proteins for TMEM176A Gene

  • Protein details for TMEM176A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96HP8-T176A_HUMAN
    Recommended name:
    Transmembrane protein 176A
    Protein Accession:
    Q96HP8
    Secondary Accessions:
    • D3DX00
    • Q9NYC7

    Protein attributes for TMEM176A Gene

    Size:
    235 amino acids
    Molecular mass:
    26116 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TMEM176A Gene

Proteomics data for TMEM176A Gene at MOPED

Post-translational modifications for TMEM176A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TMEM176A Gene

Antibody Products

  • Santa Cruz Biotechnology (SCBT) Antibodies for TMEM176A

No data available for DME Specific Peptides for TMEM176A Gene

Domains & Families for TMEM176A Gene

Gene Families for TMEM176A Gene

Protein Domains for TMEM176A Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TMEM176A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96HP8

UniProtKB/Swiss-Prot:

T176A_HUMAN :
  • Belongs to the TMEM176 family.
Family:
  • Belongs to the TMEM176 family.
genes like me logo Genes that share domains with TMEM176A: view

Function for TMEM176A Gene

genes like me logo Genes that share phenotypes with TMEM176A: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM176A Gene

Localization for TMEM176A Gene

Subcellular locations from UniProtKB/Swiss-Prot for TMEM176A Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TMEM176A Gene COMPARTMENTS Subcellular localization image for TMEM176A gene
Compartment Confidence
plasma membrane 3
extracellular 2
mitochondrion 2
peroxisome 1

No data available for Gene Ontology (GO) - Cellular Components for TMEM176A Gene

Pathways & Interactions for TMEM176A Gene

SuperPathways for TMEM176A Gene

No Data Available

Interacting Proteins for TMEM176A Gene

STRING Interaction Network Preview (showing 4 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000004103%0d%0a9606.ENSP00000254878%0d%0a9606.ENSP00000378426%0d%0a9606.ENSP00000368698%0d%0a9606.ENSP00000355330%0d%0a
Selected Interacting proteins: ENSP00000004103 for TMEM176A Gene via STRING

Gene Ontology (GO) - Biological Process for TMEM176A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM176A Gene

Drugs & Compounds for TMEM176A Gene

No Compound Related Data Available

Transcripts for TMEM176A Gene

Unigene Clusters for TMEM176A Gene

Transmembrane protein 176A:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM176A Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b · 8c ^ 9 ^ 10a · 10b · 10c · 10d
SP1: - - - - - -
SP2: - - - - - - - -
SP3: - - -
SP4: - - - - - -
SP5: - -
SP6: -
SP7: -
SP8: - -
SP9: - - - -

Relevant External Links for TMEM176A Gene

GeneLoc Exon Structure for
TMEM176A
ECgene alternative splicing isoforms for
TMEM176A

Expression for TMEM176A Gene

mRNA expression in normal human tissues for TMEM176A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TMEM176A Gene

This gene is overexpressed in Liver (x18.6) and Kidney - Cortex (x4.8).

Protein differential expression in normal tissues from HIPED for TMEM176A Gene

This gene is overexpressed in Urine (40.4), Ovary (10.4), and Liver (6.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for TMEM176A Gene



SOURCE GeneReport for Unigene cluster for TMEM176A Gene Hs.647116

genes like me logo Genes that share expression patterns with TMEM176A: view

Protein tissue co-expression partners for TMEM176A Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for TMEM176A Gene

Orthologs for TMEM176A Gene

This gene was present in the common ancestor of mammals.

Orthologs for TMEM176A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TMEM176A 35
  • 98.58 (n)
  • 97.87 (a)
TMEM176A 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TMEM176A 36
  • 55 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TMEM176A 36
  • 57 (a)
OneToOne
TMEM176A 35
  • 74.36 (n)
  • 61.11 (a)
mouse
(Mus musculus)
Mammalia Tmem176a 35
  • 66.67 (n)
  • 56.17 (a)
Tmem176a 36
  • 52 (a)
OneToOne
Tmem176a 16
oppossum
(Monodelphis domestica)
Mammalia TMEM176A 36
  • 32 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 27 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Tmem176a 35
  • 68.28 (n)
  • 58.15 (a)
Species with no ortholog for TMEM176A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TMEM176A Gene

ENSEMBL:
Gene Tree for TMEM176A (if available)
TreeFam:
Gene Tree for TMEM176A (if available)

Paralogs for TMEM176A Gene

Paralogs for TMEM176A Gene

(1) SIMAP similar genes for TMEM176A Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with TMEM176A: view

Variants for TMEM176A Gene

Sequence variations from dbSNP and Humsavar for TMEM176A Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs741064 - 150,803,641(-) CAGCG(C/T)TAGCA downstream-variant-500B, reference, missense
rs10378 - 150,804,367(-) CTGAA(A/C)AAGGC intron-variant, reference, missense
rs9088 - 150,804,428(+) CTCTG(A/G)CCCCT intron-variant, reference, missense
rs7785283 -- 150,805,520(+) AAACT(C/G)CTTGA downstream-variant-500B
rs17173611 -- 150,805,361(+) AATGC(C/T)TGGCA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for TMEM176A Gene

Variant ID Type Subtype PubMed ID
nsv831187 CNV Loss 17160897

Variation tolerance for TMEM176A Gene

Residual Variation Intolerance Score: 80.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.06; 60.69% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TMEM176A Gene

HapMap Linkage Disequilibrium report
TMEM176A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TMEM176A Gene

Disorders for TMEM176A Gene

Relevant External Links for TMEM176A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMEM176A

No disorders were found for TMEM176A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM176A Gene

Publications for TMEM176A Gene

  1. Large scale identification of human hepatocellular carcinoma- associated antigens by autoantibodies. (PMID: 12097419) Wang Y. … Chen W.-F. (J. Immunol. 2002) 2 3 4 67
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 2 3
  3. Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. (PMID: 23563607) Berndt S.I. … Ingelsson E. (Nat. Genet. 2013) 3
  4. Discovery and refinement of loci associated with lipid levels. (PMID: 24097068) . … Abecasis G.R. (Nat. Genet. 2013) 3
  5. Abnormal accumulation of human transmembrane (TMEM)-176A and 176B proteins is associated with cancer pathology. (PMID: 22244448) Cuajungco M.P. … Taylor K. (Acta Histochem. 2012) 3

Products for TMEM176A Gene

Sources for TMEM176A Gene

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