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Aliases for TMEM176A Gene

Aliases for TMEM176A Gene

  • Transmembrane Protein 176A 2 3 5
  • Hepatocellular Carcinoma-Associated Antigen 112 3 4
  • HCA112 3 4
  • Likley Ortholog Of Mouse GS188 3
  • GS188 3
  • MS4B1 3

External Ids for TMEM176A Gene

Previous GeneCards Identifiers for TMEM176A Gene

  • GC07P150128
  • GC07P150497
  • GC07P144309

Summaries for TMEM176A Gene

GeneCards Summary for TMEM176A Gene

TMEM176A (Transmembrane Protein 176A) is a Protein Coding gene. An important paralog of this gene is TMEM176B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM176A Gene

Genomics for TMEM176A Gene

Regulatory Elements for TMEM176A Gene

Enhancers for TMEM176A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F150783 1.2 FANTOM5 Ensembl ENCODE 34.7 -13.2 -13163 7.0 PKNOX1 ATF1 ARNT YY1 ELK1 GATA2 NCOA1 REST ZNF518A SMARCA4 TMEM176A TMEM176B AOC1 ZNF862 GIMAP1 GIMAP2 AGAP3 GIMAP8 SMARCD3 SLC4A2
GH07F150845 1.1 Ensembl 20.3 +45.3 45298 1.0 REST AOC1 TMEM176A TMEM176B LOC105375567
GH07F150778 1 Ensembl ENCODE 19.5 -21.2 -21203 1.6 WRNIP1 RAD21 RARA RFX5 YY1 ZNF366 ZNF143 ZNF654 ZBTB11 REST TMEM176B TMEM176A LOC105375566 BET1P1
GH07F150765 0.2 Ensembl 18.9 -34.5 -34503 0.2 SOX13 TAL1 ZNF384 YY1 HOMEZ MIXL1 SOX5 SMARCE1 GATAD2A NFIA TMEM176B TMEM176A GIMAP1 AOC1 BET1P1 LOC105375566
GH07F150798 0.8 ENCODE 18.8 +0.0 28 3.7 SMARCA4 SUZ12 RNF2 ZNF512 CBX2 REST YY1 EZH2 TMEM176A TMEM176B AOC1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TMEM176A on UCSC Golden Path with GeneCards custom track

Promoters for TMEM176A Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000159434 97 2201 RNF2 SUZ12 CBX2 REST EZH2

Genomic Location for TMEM176A Gene

Chromosome:
7
Start:
150,800,403 bp from pter
End:
150,805,120 bp from pter
Size:
4,718 bases
Orientation:
Plus strand

Genomic View for TMEM176A Gene

Genes around TMEM176A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM176A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM176A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM176A Gene

Proteins for TMEM176A Gene

  • Protein details for TMEM176A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96HP8-T176A_HUMAN
    Recommended name:
    Transmembrane protein 176A
    Protein Accession:
    Q96HP8
    Secondary Accessions:
    • D3DX00
    • Q9NYC7

    Protein attributes for TMEM176A Gene

    Size:
    235 amino acids
    Molecular mass:
    26116 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TMEM176A Gene

Post-translational modifications for TMEM176A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for TMEM176A Gene

Domains & Families for TMEM176A Gene

Gene Families for TMEM176A Gene

Protein Domains for TMEM176A Gene

Suggested Antigen Peptide Sequences for TMEM176A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96HP8

UniProtKB/Swiss-Prot:

T176A_HUMAN :
  • Belongs to the TMEM176 family.
Family:
  • Belongs to the TMEM176 family.
genes like me logo Genes that share domains with TMEM176A: view

Function for TMEM176A Gene

genes like me logo Genes that share phenotypes with TMEM176A: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM176A Gene

Localization for TMEM176A Gene

Subcellular locations from UniProtKB/Swiss-Prot for TMEM176A Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TMEM176A Gene COMPARTMENTS Subcellular localization image for TMEM176A gene
Compartment Confidence
plasma membrane 3
extracellular 2
mitochondrion 2
peroxisome 1

Gene Ontology (GO) - Cellular Components for TMEM176A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TMEM176A: view

Pathways & Interactions for TMEM176A Gene

SuperPathways for TMEM176A Gene

No Data Available

Gene Ontology (GO) - Biological Process for TMEM176A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:2001199 negative regulation of dendritic cell differentiation IEA --
genes like me logo Genes that share ontologies with TMEM176A: view

No data available for Pathways by source and SIGNOR curated interactions for TMEM176A Gene

Transcripts for TMEM176A Gene

Unigene Clusters for TMEM176A Gene

Transmembrane protein 176A:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM176A Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b · 8c ^ 9 ^ 10a · 10b · 10c · 10d
SP1: - - - - - -
SP2: - - - - - - - -
SP3: - - -
SP4: - - - - - -
SP5: - -
SP6: -
SP7: -
SP8: - -
SP9: - - - -

Relevant External Links for TMEM176A Gene

GeneLoc Exon Structure for
TMEM176A
ECgene alternative splicing isoforms for
TMEM176A

Expression for TMEM176A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TMEM176A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TMEM176A Gene

This gene is overexpressed in Liver (x18.6) and Kidney - Cortex (x4.8).

Protein differential expression in normal tissues from HIPED for TMEM176A Gene

This gene is overexpressed in Urine (40.4), Ovary (10.4), and Liver (6.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for TMEM176A Gene



Protein tissue co-expression partners for TMEM176A Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TMEM176A Gene:

TMEM176A

SOURCE GeneReport for Unigene cluster for TMEM176A Gene:

Hs.647116
genes like me logo Genes that share expression patterns with TMEM176A: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for TMEM176A Gene

Orthologs for TMEM176A Gene

This gene was present in the common ancestor of mammals.

Orthologs for TMEM176A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TMEM176A 34 35
  • 98.58 (n)
dog
(Canis familiaris)
Mammalia TMEM176A 34 35
  • 74.36 (n)
rat
(Rattus norvegicus)
Mammalia Tmem176a 34
  • 68.28 (n)
mouse
(Mus musculus)
Mammalia Tmem176a 34 16 35
  • 66.67 (n)
cow
(Bos Taurus)
Mammalia TMEM176A 35
  • 55 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TMEM176A 35
  • 32 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 27 (a)
OneToMany
Species where no ortholog for TMEM176A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TMEM176A Gene

ENSEMBL:
Gene Tree for TMEM176A (if available)
TreeFam:
Gene Tree for TMEM176A (if available)

Paralogs for TMEM176A Gene

Paralogs for TMEM176A Gene

(1) SIMAP similar genes for TMEM176A Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with TMEM176A: view

Variants for TMEM176A Gene

Sequence variations from dbSNP and Humsavar for TMEM176A Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10227304 -- 150,798,758(+) atgtt(A/C)agggc intron-variant, upstream-variant-2KB
rs10230520 -- 150,799,007(+) GACTT(C/G)CCCGT intron-variant, upstream-variant-2KB
rs10230657 -- 150,799,123(+) ACCTT(C/G)GCCGT intron-variant, upstream-variant-2KB
rs10230736 -- 150,799,016(+) GTTTC(A/G)AGATT intron-variant, upstream-variant-2KB
rs10239302 -- 150,801,488(+) ATCTG(A/C)GAAAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TMEM176A Gene

Variant ID Type Subtype PubMed ID
dgv3695n106 OTHER inversion 24896259
nsv1030109 CNV gain 25217958
nsv1067934 OTHER inversion 25765185
nsv1151906 OTHER inversion 26484159
nsv608990 CNV gain 21841781
nsv831187 CNV loss 17160897

Variation tolerance for TMEM176A Gene

Residual Variation Intolerance Score: 80.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.06; 60.69% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TMEM176A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM176A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TMEM176A Gene

Disorders for TMEM176A Gene

Relevant External Links for TMEM176A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMEM176A

No disorders were found for TMEM176A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM176A Gene

Publications for TMEM176A Gene

  1. Large scale identification of human hepatocellular carcinoma- associated antigens by autoantibodies. (PMID: 12097419) Wang Y. … Chen W.-F. (J. Immunol. 2002) 2 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 3 4 64
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 2 3 64
  5. Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. (PMID: 23563607) Berndt S.I. … Ingelsson E. (Nat. Genet. 2013) 3 64

Products for TMEM176A Gene

Sources for TMEM176A Gene

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