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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

TMEM163 Gene

protein-coding   GIFtS: 43
GCID: GC02M135213

transmembrane protein 163
  Search for TMEM163
in
MalaCards
our new
 Human Malady Compendium 
Biological research products
for TMEM163    

Aliases
for TMEM163 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
Transmembrane Protein 1631 2
SV311 2
DKFZP566N0341
DC292

External Ids:    HGNC: 253801   Entrez Gene: 816152   Ensembl: ENSG000001521287   UniProtKB: Q8TC263   

Export aliases for TMEM163 gene to outside databases

Previous GC identifers: GC02M134930 GC02M127206


Summaries
for TMEM163 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
UniProtKB/Swiss-Prot: TM163_HUMAN, Q8TC26
Function: May bind zinc and other divalent cations and recruit them to vesicular organelles (By similarity)




Genomic Views
for TMEM163 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000002.11  NC_018913.1  NT_022135.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the TMEM163 gene promoter:
         Egr-3   AML1a   Pbx1a   Pax-5   HNF-1A   C/EBPalpha   Egr-4   IRF-2   Pax-4a   LyF-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: TMEM163 promoter sequence
   Search SABiosciences Chromatin IP Primers for TMEM163

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TMEM163


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2q21.3   Ensembl cytogenetic band:  2q21.3   HGNC cytogenetic band: 2q21.3

TMEM163 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TMEM163 gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02M135213:  view genomic region     (about GC identifiers)

Start:
 135,213,330 bp from pter      End:
 135,476,571 bp from pter
Size:
 263,242 bases      Orientation:
 minus strand

Proteins
for TMEM163 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: TM163_HUMAN, Q8TC26 (See protein sequence)
Recommended Name: Transmembrane protein 163  
Size: 289 amino acids; 31469 Da
Subcellular location: Cytoplasmic vesicle, secretory vesicle, synaptic vesicle membrane; Multi-pass membrane protein
(By similarity). Early endosome membrane (By similarity). Note=Glutamatergic synaptic vesicles (By similarity)
Sequence caution: Sequence=CAH10592.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;
Secondary accessions: Q53QM3 Q53SV7 Q69YH3 Q9UFG3
Alternative splicing: 3 isoforms:  Q8TC26-1   Q8TC26-2   Q8TC26-3   (No experimental confirmation available. Dubious isoform that could be a cloning artifact)

Explore the universe of human proteins at neXtProt for TMEM163: NX_Q8TC26

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q8TC26

    • TMEM163 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_112185.1  
    ENSEMBL proteins: 
     ENSP00000281924  

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    Uscn Proteins for TMEM163

    Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0030054cell junction IEA--
    GO:0030285integral to synaptic vesicle membrane ISS--
    GO:0031901early endosome membrane ISS--


    TMEM163 for ontologies           About GeneDecksing



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    Protein Domains /
    Families
    for TMEM163 gene

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    TMEM163 for domains           About GeneDecksing

    1 InterPro domain/family:
     IPR026765 Tmem163

    Graphical View of Domain Structure for InterPro Entry Q8TC26

    ProtoNet protein and cluster: Q8TC26

    UniProtKB/Swiss-Prot: TM163_HUMAN, Q8TC26
    Similarity: Belongs to the TMEM163 family


    Function
    for TMEM163 gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section
    Function Summary:

         UniProtKB/Swiss-Prot: TM163_HUMAN, Q8TC26
    Function: May bind zinc and other divalent cations and recruit them to vesicular organelles (By similarity)

    miRNA
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    8/14 QIAGEN miScript miRNA Assays for microRNAs that regulate TMEM163 (see all 14):
    hsa-miR-520d-5p hsa-miR-29a hsa-miR-29c hsa-miR-1271 hsa-miR-218 hsa-miR-373* hsa-miR-593* hsa-miR-518a-5p
    SwitchGear 3'UTR luciferase reporter plasmid: TMEM163 3' UTR sequence
    Inhib. RNA
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    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for TMEM163 (see all 7)
    OriGene shRNA RFP: TMEM163
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    Gene Editing
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    Clone
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    Cell Line
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    Search LifeMap BioReagents cell lines for TMEM163

    In Situ Assay
    Products:       
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    Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008270zinc ion binding ISS--


    TMEM163 for ontologies           About GeneDecksing


    2 GenomeRNAi human phenotypes for TMEM163:
     Decreased p24 protein expressi  Increased cell number in G1, a 


    Pathways & Interactions
    for TMEM163 gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TMEM163

    Drugs & Compounds
    for TMEM163 gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for TMEM163
    Search CenterWatch for drugs/clinical trials and news about TMEM163 / TM163 

    Transcripts
    for TMEM163 gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section
    REFSEQ mRNAs for TMEM163 gene: 
    NM_030923.4  

    Unigene Cluster for TMEM163:

    Transmembrane protein 163
    Hs.369471  [show with all ESTs]
    Unigene Representative Sequence: AK054738
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000281924(uc002ttx.3 uc002tty.3) ENST00000467316 ENST00000476823


    miRNA
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    8/14 QIAGEN miScript miRNA Assays for microRNAs that regulate TMEM163 (see all 14):
    hsa-miR-520d-5p hsa-miR-29a hsa-miR-29c hsa-miR-1271 hsa-miR-218 hsa-miR-373* hsa-miR-593* hsa-miR-518a-5p
    SwitchGear 3'UTR luciferase reporter plasmid: TMEM163 3' UTR sequence
    Inhib. RNA
    Products:             		Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for TMEM163 (see all 7)
    OriGene shRNA RFP: TMEM163
    OriGene siRNA: TMEM163
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TMEM163
    Clone
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    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TMEM163
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    GenScript: all cDNA clones in your preferred vector: TMEM163 (NM_030923)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for TMEM163
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TMEM163 
    Primer
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TMEM163
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TMEM163

    Additional cDNA sequence: 

    AF255647.1 AK054738.1 BC026170.2 

    7 DOTS entries:

    DT.95160760  DT.108975  DT.92432071  DT.120938126  DT.97842002  DT.92432070  DT.95160756 

    24/81 AceView cDNA sequences (see all 81):

    AA325625 CR594909 T09462 AL833765 BM720522 AI307369 AW274464 BF222711 
    BM713342 CD708547 AW297292 AW131848 AA724080 AW339326 AA887325 AK054738 
    BX389420 AI681890 NM_030923 AI298990 BE465280 AI598112 AW207069 AW291973 

    GeneLoc Exon Structure


    Expression
    for TMEM163 gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    TMEM163 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: TGAAAACTGG

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)
    About this image

    TMEM163 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    Stem Cell Differentiation: 5 LifeMap Cells 
    NameCategory
    PureStem™ endothelial Progenitor 30-SM2-3 (Embryonic Progenitor Cell)Blood, Endothelium
    PureStem™ endothelial progenitor 30-SM2-1 (Embryonic Progenitor Cell)Endothelium
    PureStem™ endothelial progenitor RP1-MV2-18 (Embryonic Progenitor Cell)Endothelium
    PureStem™ endothelial progenitor 30-MV2-14 (Embryonic Progenitor Cell)Endothelium
    Midbrain dopaminergic-like neurons (Generation of midbra...)
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See TMEM163 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for TMEM163

    SOURCE GeneReport for Unigene cluster: Hs.369471
        SABiosciences Custom PCR Arrays for TMEM163
    Primer
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    In Situ
    Assay Products:     
         		Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TMEM163

    Orthologs
    for TMEM163 gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    This gene was present in the common ancestor of chordates.

    Orthologs for TMEM163 gene from 4/12 species (see all 12)    About this table
    Organism Taxonomic
    classification    		 Gene Description Human
    Similarity    		 Orthology
    Type    		 Details
    mouse
    (Mus musculus)    		 Mammalia Tmem1631 , 5 transmembrane protein 1631, 5 86.06(n)1
    91.64(a)1    		   1 (55.77 cM)5
    721601  NM_028135.21  NP_082411.11 
     1274865465 
    chicken
    (Gallus gallus)    		 Aves TMEM1631 transmembrane protein 163 77.4(n)
    86.74(a)    		   424287  XM_422132.3  XP_422132.2 
    lizard
    (Anolis carolinensis)    		 Reptilia TMEM1636
    		 --
    		 86(a)
    		 1 ↔ 1
    		 1(96261092-96313370)
    zebrafish
    (Danio rerio)    		 Actinopterygii LOC1003336731 transmembrane protein 163-like 68.89(n)
    75.56(a)    		   100333673  XM_002666219.2  XP_002666265.2 


    ENSEMBL Gene Tree for TMEM163 (if available)
    TreeFam Gene Tree for TMEM163 (if available) 

    Paralogs
    for TMEM163 gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    		  --

    Genomic Variants
    for TMEM163 gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/4535 NCBI SNPs in TMEM163 are shown (see all 4535)     About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance    		Chr 2 posSequence#AA
    Chg    		TypeMore#Allele
    freq    		PopTotal
    sample    		More
    ----------
    rs1112801821,2
    		--135212836(+) CGCTAC/TCAGTG 1 -- int11Minor allele frequency- T:0.50CSA 2
    rs1864252351,2
    		--135212866(+) TTCCAC/TGATGT 1 -- int10--------
    rs745624621,2
    		C,--135212875(+) GTATAT/CTAGAC 1 -- int14Minor allele frequency- C:0.10WA NA EA 360
    rs1459918941,2
    		C,--135212934(+) CAATC-/TTTTT 
                TTTCT     		1 -- int10--------
    rs2014142311,2
    		--135212951(+) GTTCA-/TGTTGTTG 1 -- int10--------
    rs1907299381,2
    		--135212978(+) CTTGAC/TGTATT 1 -- int10--------
    rs1822069501,2
    		--135213055(+) ACAAAC/GTCCCT 1 -- int10--------
    rs751007171,2
    		F,--135213056(+) CAAACT/CCCCTT 1 -- int12Minor allele frequency- C:0.03NA EA 240
    rs1481697431,2
    		--135213125(+) CCCTCA/GGTGCC 1 -- int10--------
    rs780417581,2
    		F,--135213213(+) CACCCC/TTAGGC 1 -- int11Minor allele frequency- T:0.02WA 118

    HapMap Linkage Disequilibrium report for TMEM163 (135213330 - 135463330 bp, first 250kb of TMEM163)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 5 variations for TMEM163
         4 CNVs: 68182 61832 23584 97995
         1 Indel: 26445

    SABiosciences Cancer Mutation PCR Assays
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    Disorders / Diseases
    for TMEM163 gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    TMEM163 for disorders           About MalaCards

    TMEM163 for disorders           About GeneDecksing

    Human Genome Epidemiology (HuGE) Navigator: TMEM163 (1 document)

    Export disorders for TMEM163 gene to outside databases

    Publications
    for TMEM163 gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for TMEM163 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with TMEM163)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. Identification and characterization of SV31, a novel synaptic vesicle membrane protein and potential transporter. (PubMed id 17623043)1, 3 Burre J....Volknandt W. (2007)
    2. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)1, 2 Hillier L.W....Wilson R.K. (2005)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    4. The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (2004)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    External Searches for TMEM163 gene

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  
      Query String
    		PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    Genome Databases showing TMEM163 gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 81615 HGNC: 25380 AceView: DKFZP566N034 Ensembl:ENSG00000152128 euGenes: HUgn81615
    ECgene: TMEM163 H-InvDB: TMEM163

    Other Databases showing TMEM163 gene

    (According to HUGE)
    About This Section
    		   --

    Specialized Databases showing TMEM163 gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for TMEM163 Pharmacogenomics, SNPs, Pathways

    Intellectual Property
    for TMEM163 gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    		Patent Information for TMEM163 gene:
    Search GeneIP for patents involving TMEM163

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    Products
    for TMEM163 gene

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    Advanced Cell Diagnostics
    About This Section

     
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