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Aliases for TMEM161B-AS1 Gene

Subcategory (RNA class) for TMEM161B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TMEM161B-AS1 Gene

  • TMEM161B Antisense RNA 1 2 3 5
  • TMEM161B Antisense RNA 1 (Non-Protein Coding) 2 3
  • Linc-POLR3G-8 3
  • CTC-358I24.1 3

External Ids for TMEM161B-AS1 Gene

Previous GeneCards Identifiers for TMEM161B-AS1 Gene

  • GC05P087566

Summaries for TMEM161B-AS1 Gene

GeneCards Summary for TMEM161B-AS1 Gene

TMEM161B-AS1 (TMEM161B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM161B-AS1 Gene

Genomics for TMEM161B-AS1 Gene

Regulatory Elements for TMEM161B-AS1 Gene

Enhancers for TMEM161B-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around TMEM161B-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TMEM161B-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around TMEM161B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TMEM161B-AS1 Gene

Chromosome:
5
Start:
88,268,882 bp from pter
End:
88,436,685 bp from pter
Size:
167,804 bases
Orientation:
Plus strand

Genomic View for TMEM161B-AS1 Gene

Genes around TMEM161B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM161B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM161B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM161B-AS1 Gene

Proteins for TMEM161B-AS1 Gene

Post-translational modifications for TMEM161B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM161B-AS1 Gene

Domains & Families for TMEM161B-AS1 Gene

Gene Families for TMEM161B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TMEM161B-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMEM161B-AS1 Gene

Function for TMEM161B-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM161B-AS1 Gene

Localization for TMEM161B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TMEM161B-AS1 Gene

Pathways & Interactions for TMEM161B-AS1 Gene

SuperPathways for TMEM161B-AS1 Gene

No Data Available

Interacting Proteins for TMEM161B-AS1 Gene

Gene Ontology (GO) - Biological Process for TMEM161B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM161B-AS1 Gene

Drugs & Compounds for TMEM161B-AS1 Gene

No Compound Related Data Available

Transcripts for TMEM161B-AS1 Gene

mRNA/cDNA for TMEM161B-AS1 Gene

(5) Additional mRNA sequences :
(13) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMEM161B-AS1 Gene

TMEM161B antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM161B-AS1 Gene

No ASD Table

Relevant External Links for TMEM161B-AS1 Gene

GeneLoc Exon Structure for
TMEM161B-AS1
ECgene alternative splicing isoforms for
TMEM161B-AS1

Expression for TMEM161B-AS1 Gene

mRNA expression in normal human tissues for TMEM161B-AS1 Gene

SOURCE GeneReport for Unigene cluster for TMEM161B-AS1 Gene:

Hs.559426
genes like me logo Genes that share expression patterns with TMEM161B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TMEM161B-AS1 Gene

Orthologs for TMEM161B-AS1 Gene

Evolution for TMEM161B-AS1 Gene

ENSEMBL:
Gene Tree for TMEM161B-AS1 (if available)
TreeFam:
Gene Tree for TMEM161B-AS1 (if available)

No data available for Orthologs for TMEM161B-AS1 Gene

Paralogs for TMEM161B-AS1 Gene

No data available for Paralogs for TMEM161B-AS1 Gene

Variants for TMEM161B-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM161B-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs193705 -- 88,291,028(-) AATGG(C/T)TTGCT intron-variant
rs193706 -- 88,338,472(+) ctcct(A/G)tcaga intron-variant
rs247909 -- 88,296,207(-) caggc(A/G)taagc intron-variant
rs247910 -- 88,334,952(+) agggc(A/G)tccct intron-variant
rs247911 -- 88,337,941(+) ggtac(A/G)gaact intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TMEM161B-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2662134 CNV deletion 23128226
esv2730445 CNV deletion 23290073
esv3413505 CNV duplication 20981092
esv3566251 CNV deletion 23714750
nsv1140555 CNV deletion 24896259
nsv329205 CNV deletion 16902084
nsv950101 CNV duplication 24416366
nsv955851 CNV deletion 24416366
nsv968962 CNV duplication 23825009

Relevant External Links for TMEM161B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TMEM161B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TMEM161B-AS1 Gene

Disorders for TMEM161B-AS1 Gene

Relevant External Links for TMEM161B-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMEM161B-AS1

No disorders were found for TMEM161B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM161B-AS1 Gene

Publications for TMEM161B-AS1 Gene

  1. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. (PMID: 21890647) Cabili M.N. … Rinn J.L. (Genes Dev. 2011) 2 3 65
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 65
  3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 65
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 65
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 65

Products for TMEM161B-AS1 Gene

Sources for TMEM161B-AS1 Gene

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