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Aliases for TMEM161B-AS1 Gene

Subcategory (RNA class) for TMEM161B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TMEM161B-AS1 Gene

  • TMEM161B Antisense RNA 1 2 3 5
  • TMEM161B Antisense RNA 1 (Non-Protein Coding) 2 3
  • Linc-POLR3G-8 3
  • CTC-358I24.1 3

External Ids for TMEM161B-AS1 Gene

Previous GeneCards Identifiers for TMEM161B-AS1 Gene

  • GC05P087566

Summaries for TMEM161B-AS1 Gene

GeneCards Summary for TMEM161B-AS1 Gene

TMEM161B-AS1 (TMEM161B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM161B-AS1 Gene

Genomics for TMEM161B-AS1 Gene

Regulatory Elements for TMEM161B-AS1 Gene

Promoters for TMEM161B-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around TMEM161B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TMEM161B-AS1 Gene

Chromosome:
5
Start:
88,268,882 bp from pter
End:
88,436,685 bp from pter
Size:
167,804 bases
Orientation:
Plus strand

Genomic View for TMEM161B-AS1 Gene

Genes around TMEM161B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TMEM161B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TMEM161B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM161B-AS1 Gene

Proteins for TMEM161B-AS1 Gene

Post-translational modifications for TMEM161B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM161B-AS1 Gene

Domains & Families for TMEM161B-AS1 Gene

Gene Families for TMEM161B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TMEM161B-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMEM161B-AS1 Gene

Function for TMEM161B-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TMEM161B-AS1 Gene

Localization for TMEM161B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TMEM161B-AS1 Gene

Pathways & Interactions for TMEM161B-AS1 Gene

SuperPathways for TMEM161B-AS1 Gene

No Data Available

Interacting Proteins for TMEM161B-AS1 Gene

Gene Ontology (GO) - Biological Process for TMEM161B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TMEM161B-AS1 Gene

Drugs & Compounds for TMEM161B-AS1 Gene

No Compound Related Data Available

Transcripts for TMEM161B-AS1 Gene

mRNA/cDNA for TMEM161B-AS1 Gene

(5) Additional mRNA sequences :
(13) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMEM161B-AS1 Gene

TMEM161B antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM161B-AS1 Gene

No ASD Table

Relevant External Links for TMEM161B-AS1 Gene

GeneLoc Exon Structure for
TMEM161B-AS1
ECgene alternative splicing isoforms for
TMEM161B-AS1

Expression for TMEM161B-AS1 Gene

mRNA expression in normal human tissues for TMEM161B-AS1 Gene

SOURCE GeneReport for Unigene cluster for TMEM161B-AS1 Gene Hs.559426

genes like me logo Genes that share expression patterns with TMEM161B-AS1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for TMEM161B-AS1 Gene

Orthologs for TMEM161B-AS1 Gene

Evolution for TMEM161B-AS1 Gene

ENSEMBL:
Gene Tree for TMEM161B-AS1 (if available)
TreeFam:
Gene Tree for TMEM161B-AS1 (if available)

No data available for Orthologs for TMEM161B-AS1 Gene

Paralogs for TMEM161B-AS1 Gene

No data available for Paralogs for TMEM161B-AS1 Gene

Variants for TMEM161B-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM161B-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs33703 -- 88,270,914(-) TTTAG(A/G)ACAGA intron-variant
rs33715 -- 88,319,482(-) CAGGC(A/G)TGCTA intron-variant
rs193705 -- 88,291,028(-) AATGG(C/T)TTGCT intron-variant
rs193706 -- 88,338,472(+) ctcct(A/G)tcaga intron-variant
rs247909 -- 88,296,207(-) caggc(A/G)taagc intron-variant

Relevant External Links for TMEM161B-AS1 Gene

HapMap Linkage Disequilibrium report
TMEM161B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TMEM161B-AS1 Gene

Disorders for TMEM161B-AS1 Gene

Relevant External Links for TMEM161B-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TMEM161B-AS1

No disorders were found for TMEM161B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TMEM161B-AS1 Gene

Publications for TMEM161B-AS1 Gene

  1. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. (PMID: 21890647) Cabili M.N. … Rinn J.L. (Genes Dev. 2011) 2 3 67
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3

Products for TMEM161B-AS1 Gene

Sources for TMEM161B-AS1 Gene

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