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Aliases for TMEM161B-AS1 Gene

Subcategory (RNA class) for TMEM161B-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for TMEM161B-AS1 Gene

  • TMEM161B Antisense RNA 1 2 3
  • TMEM161B Antisense RNA 1 (Non-Protein Coding) 2 3
  • Linc-POLR3G-8 3
  • CTC-358I24.1 3

External Ids for TMEM161B-AS1 Gene

Summaries for TMEM161B-AS1 Gene

GeneCards Summary for TMEM161B-AS1 Gene

TMEM161B-AS1 (TMEM161B Antisense RNA 1) is an RNA Gene, and belongs to the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TMEM161B-AS1 Gene

Genomics for TMEM161B-AS1 Gene

Genomic Location for TMEM161B-AS1 Gene

Start:
88,268,882 bp from pter
End:
88,436,685 bp from pter
Size:
167,804 bases
Orientation:
Plus strand

Genomic View for TMEM161B-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TMEM161B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TMEM161B-AS1 Gene

No data available for Regulatory Elements for TMEM161B-AS1 Gene

Proteins for TMEM161B-AS1 Gene

Post-translational modifications for TMEM161B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TMEM161B-AS1 Gene

Domains for TMEM161B-AS1 Gene

Gene Families for TMEM161B-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TMEM161B-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TMEM161B-AS1 Gene

Function for TMEM161B-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TMEM161B-AS1 Gene

Localization for TMEM161B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TMEM161B-AS1 Gene

Pathways for TMEM161B-AS1 Gene

SuperPathways for TMEM161B-AS1 Gene

No Data Available

Interacting Proteins for TMEM161B-AS1 Gene

Gene Ontology (GO) - Biological Process for TMEM161B-AS1 Gene

None

No data available for Pathways by source for TMEM161B-AS1 Gene

Transcripts for TMEM161B-AS1 Gene

mRNA/cDNA for TMEM161B-AS1 Gene

(5) Additional mRNA sequences :
(16) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TMEM161B-AS1 Gene

TMEM161B antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TMEM161B-AS1 Gene

No ASD Table

Relevant External Links for TMEM161B-AS1 Gene

GeneLoc Exon Structure for
TMEM161B-AS1
ECgene alternative splicing isoforms for
TMEM161B-AS1

Expression for TMEM161B-AS1 Gene

mRNA expression in normal human tissues for TMEM161B-AS1 Gene

SOURCE GeneReport for Unigene cluster for TMEM161B-AS1 Gene Hs.559426

genes like me logo Genes that share expressions with TMEM161B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for TMEM161B-AS1 Gene

Orthologs for TMEM161B-AS1 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for TMEM161B-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Gm17750 16
Species with no ortholog for TMEM161B-AS1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TMEM161B-AS1 Gene

ENSEMBL:
Gene Tree for TMEM161B-AS1 (if available)
TreeFam:
Gene Tree for TMEM161B-AS1 (if available)

Paralogs for TMEM161B-AS1 Gene

No data available for Paralogs for TMEM161B-AS1 Gene

Variants for TMEM161B-AS1 Gene

Sequence variations from dbSNP and Humsavar for TMEM161B-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs33703 -- 88,270,914(-) TTTAG(A/G)ACAGA intron-variant
rs33715 -- 88,319,482(-) CAGGC(A/G)TGCTA intron-variant
rs193705 -- 88,291,028(-) AATGG(C/T)TTGCT intron-variant
rs193706 -- 88,338,472(+) ctcct(A/G)tcaga intron-variant
rs247909 -- 88,296,207(-) caggc(A/G)taagc intron-variant

Relevant External Links for TMEM161B-AS1 Gene

HapMap Linkage Disequilibrium report
TMEM161B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for TMEM161B-AS1 Gene

Disorders for TMEM161B-AS1 Gene

No disorders were found for TMEM161B-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for TMEM161B-AS1 Gene

Publications for TMEM161B-AS1 Gene

  1. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. (PMID: 21890647) Cabili M.N. … Rinn J.L. (Genes Dev. 2011) 2 3
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for TMEM161B-AS1 Gene

Sources for TMEM161B-AS1 Gene

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